Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0000899

Physical Location & Seq

Genomic Coordinates Forward (+)

70760310 .. 70760684

Gene Structure 375 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG531800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGTTAAAGTACGCAGATGTGGATTTCATTGGCCAAATTGATAACGCAAACAAGATCTATATGTGGAATGCTCAAGAAGTAGGTAATCCTACACCATTCAATGAGAAGGTTACAGAATTATTAAGTGGATTGTCTACTACAGCCTCTTCTTCTAATCCAAAGCTTTATGCTACTGGCGAGGTGGGGCTCTATAAATCAACCAAGCTATATGGTTTAGTTCAATGCACGAGGGATCTATCTGAACCAGATTGCAAGAAGTGTCTTGATGGAGCAATAAGCGAACTGCCAGACTGTTGTGATGCAAAGCGAGGTGGGCGGGTTGTGGGCGGGAGTTGTAACTTTAGATACGAAATTTACCCTTTCGTTGATTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0030312 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071944 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1204 Stress-antifung

Protein Analysis

124

Amino Acids

13.61

Weight (kDa)

4.9

Isoelectric Point (pI)

34.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stress-antifung	PF01657	28 - 118	1.8e-15	Salt stress response/antifungal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000899)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22060
fragaria_vesca	FvH4_2g10161
malus_domestica	MD05G1056000.v1.1 MD05G1056300.v1.1 MD10G1064400.v1.1
prunus_persica	Prupe.3G109800_v2.0.a1 Prupe.3G110100_v2.0.a1 Prupe.3G110200_v2.0.a1 Prupe.3G110300_v2.0.a1 Prupe.8G086600_v2.0.a1
pyrus_communis	pycom05g04770 pycom05g04780
rosa_chinensis	RchiOBHm_Chr1g0328011 RchiOBHm_Chr1g0328031 RchiOBHm_Chr2g0158681 RchiOBHm_Chr2g0160231 RchiOBHm_Chr2g0160251
rosa_laevigata	RLG00000014015 RLG00000021106 RLG00000021206 RLG00000021207 RLG00000029943 RLG00000029944 RLG00000029946 RLG00000029948
rosa_multiflora	Rmu_co8269469.1_g000001 Rmu_co8408147.1_g000001 Rmu_sc0000403.1_g000003 Rmu_sc0008269.1_g000008 Rmu_sc0020806.1_g000002
rosa_roxburghii	Rroxscaffold_2G00091070 Rroxscaffold_2G00091110 Rroxscaffold_4G00321960 Rroxscaffold_4G00321970 Rroxscaffold_4G00321980 Rroxscaffold_4G00322000 Rroxscaffold_4G00322030 Rroxscaffold_7G00200860 Rroxscaffold_7G00200940
rosa_rugosa	Rorug01G0073200 Rorug01G0073200 Rorug01G0073300 Rorug02G0471400 Rorug02G0472000 Rorug02G0482400 Rorug02G0482400
rosa_samantha	Rh1BG071900 Rh1BG072100 Rh2AG537200 Rh2AG547800 Rh2BG550400 Rh2BG561200 Rh2BG561400 Rh2CG520900 Rh2CG531800 Rh2CG532100 Rh6AG153200 Rh6CG149000
rosa_wichuraiana	Rw0G019500 Rw1G006970 Rw1G006980 Rw1G006990 Rw2G044480 Rw2G045320 Rw6G013180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	134
AciI	CCGC	2 cut(s)	316, 327
AclWI	GGATC	1 cut(s)	240
AcoI	YGGCCR	1 cut(s)	31
AcsI	RAATTY	1 cut(s)	351
AfaI	GTAC	1 cut(s)	11
AgsI	TTSAA	2 cut(s)	100, 221
AluBI	AGCT	2 cut(s)	163, 205
AluI	AGCT	2 cut(s)	163, 205
AlwI	GGATC	1 cut(s)	240
AoxI	GGCC	1 cut(s)	31
ApoI	RAATTY	1 cut(s)	351
BalI	TGGCCA	1 cut(s)	33
BanII	GRGCYC	1 cut(s)	189
BauI	CACGAG	1 cut(s)	226
BccI	CCATC	1 cut(s)	260
BfmI	CTRYAG	1 cut(s)	138
BglII	AGATCT	1 cut(s)	54
BmsI	GCATC	1 cut(s)	289
BpuEI	CTTGAG	1 cut(s)	57
Bse1I	ACTGG	1 cut(s)	178
BseNI	ACTGG	1 cut(s)	178
BshFI	GGCC	1 cut(s)	33
BsmI	GAATGC	1 cut(s)	73
BsnI	GGCC	1 cut(s)	33
Bsp1286I	GDGCHC	1 cut(s)	189
Bsp143I	GATC	2 cut(s)	54, 232
BspACI	CCGC	2 cut(s)	316, 327
BspANI	GGCC	1 cut(s)	33
BspPI	GGATC	1 cut(s)	240
BsrI	ACTGG	1 cut(s)	178
BssMI	GATC	2 cut(s)	54, 232
BssSI	CACGAG	1 cut(s)	226
Bst2BI	CACGAG	1 cut(s)	226
Bst4CI	ACNGT	1 cut(s)	293
Bst6I	CTCTTC	1 cut(s)	151
BstKTI	GATC	2 cut(s)	57, 235
BstMBI	GATC	2 cut(s)	54, 232
BstMWI	GCNNNNNNNGC	1 cut(s)	313
BstSFI	CTRYAG	1 cut(s)	138
BstX2I	RGATCY	2 cut(s)	54, 232
BstYI	RGATCY	2 cut(s)	54, 232
BsuRI	GGCC	1 cut(s)	33
Csp6I	GTAC	1 cut(s)	10
CviJI	RGCY	5 cut(s)	33, 143, 163, 187, 205
CviKI_1	RGCY	5 cut(s)	33, 143, 163, 187, 205
CviQI	GTAC	1 cut(s)	10
DpnI	GATC	2 cut(s)	56, 234
DpnII	GATC	2 cut(s)	54, 232
EaeI	YGGCCR	1 cut(s)	31
Eam1104I	CTCTTC	1 cut(s)	151
EarI	CTCTTC	1 cut(s)	151
Eco24I	GRGCYC	1 cut(s)	189
EcoT38I	GRGCYC	1 cut(s)	189
FaiI	YATR	6 cut(s)	60, 62, 168, 192, 208, 210
FauI	CCCGC	2 cut(s)	309, 320
FblI	GTMKAC	1 cut(s)	134
FriOI	GRGCYC	1 cut(s)	189
HaeIII	GGCC	1 cut(s)	33
HindIII	AAGCTT	1 cut(s)	161
HinfI	GANTC	1 cut(s)	368
Hpy166II	GTNNAC	1 cut(s)	135
Hpy188I	TCNGA	1 cut(s)	241
Hpy188III	TCNNGA	2 cut(s)	74, 263
Hpy8I	GTNNAC	1 cut(s)	135
HpyAV	CCTTC	1 cut(s)	100
HpyCH4III	ACNGT	1 cut(s)	293
HpyCH4V	TGCA	3 cut(s)	225, 252, 302
HpyF10VI	GCNNNNNNNGC	1 cut(s)	313
Kzo9I	GATC	2 cut(s)	54, 232
LmnI	GCTCC	1 cut(s)	269
LpnPI	CCDG	3 cut(s)	159, 258, 300
LweI	GCATC	1 cut(s)	289
MaeIII	GTNAC	2 cut(s)	109, 335
MalI	GATC	2 cut(s)	56, 234
MboI	GATC	2 cut(s)	54, 232
MboII	GAAGA	2 cut(s)	138, 141
MflI	RGATCY	2 cut(s)	54, 232
MhlI	GDGCHC	1 cut(s)	189
MlsI	TGGCCA	1 cut(s)	33
MluCI	AATT	3 cut(s)	36, 116, 351
MluNI	TGGCCA	1 cut(s)	33
MnlI	CCTC	4 cut(s)	154, 172, 222, 302
Mox20I	TGGCCA	1 cut(s)	33
MscI	TGGCCA	1 cut(s)	33
MseI	TTAA	3 cut(s)	5, 122, 373
Msp20I	TGGCCA	1 cut(s)	33
Mva1269I	GAATGC	1 cut(s)	73
MwoI	GCNNNNNNNGC	1 cut(s)	313
NdeII	GATC	2 cut(s)	54, 232
PctI	GAATGC	1 cut(s)	73
PfeI	GAWTC	1 cut(s)	368
PsuI	RGATCY	2 cut(s)	54, 232
RsaI	GTAC	1 cut(s)	11
RsaNI	GTAC	1 cut(s)	10
SaqAI	TTAA	3 cut(s)	5, 122, 373
Sau3AI	GATC	2 cut(s)	54, 232
SduI	GDGCHC	1 cut(s)	189
SetI	ASST	6 cut(s)	85, 111, 165, 183, 207, 313
SfaNI	GCATC	1 cut(s)	289
SfcI	CTRYAG	1 cut(s)	138
SmlI	CTYRAG	1 cut(s)	72
SmoI	CTYRAG	1 cut(s)	72
Sse9I	AATT	3 cut(s)	36, 116, 351
SsiI	CCGC	2 cut(s)	316, 327
TaaI	ACNGT	1 cut(s)	293
TasI	AATT	3 cut(s)	36, 116, 351
TfiI	GAWTC	1 cut(s)	368
Tru1I	TTAA	3 cut(s)	5, 122, 373
Tru9I	TTAA	3 cut(s)	5, 122, 373
TspDTI	ATGAA	1 cut(s)	16
XapI	RAATTY	1 cut(s)	351
XmiI	GTMKAC	1 cut(s)	134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.