Belongs to the small GTPase superfamily. Rho family
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_2 | PF13041 | 71 - 114 | 2.7e-06 | PPR repeat family |
| PPR_1 | PF12854 | 149 - 171 | 7.4e-06 | PPR repeat |
| PPR_2 | PF13041 | 277 - 325 | 1.3e-07 | PPR repeat family |
| PPR_2 | PF13041 | 378 - 426 | 1.1e-11 | PPR repeat family |
| PPR | PF01535 | 381 - 411 | 4.2e-07 | PPR repeat |
| PPR_2 | PF13041 | 479 - 527 | 2.2e-13 | PPR repeat family |
| PPR_1 | PF12854 | 480 - 508 | 1.5e-06 | PPR repeat |
| PPR | PF01535 | 482 - 508 | 4.3e-09 | PPR repeat |
| E_motif | PF20431 | 597 - 659 | 5.2e-19 | E motif |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 870 |
| AccB1I | GGYRCC | 1 cut(s) | 931 |
| AccBSI | CCGCTC | 1 cut(s) | 1915 |
| AccI | GTMKAC | 1 cut(s) | 126 |
| AccII | CGCG | 1 cut(s) | 653 |
| AccIII | TCCGGA | 1 cut(s) | 164 |
| AciI | CCGC | 7 cut(s) | 304, 651, 653, 671, 716, 1900, 1915 |
| AclWI | GGATC | 3 cut(s) | 18, 1597, 2044 |
| AcsI | RAATTY | 7 cut(s) | 523, 680, 832, 1037, 1346, 1393, 1634 |
| AcuI | CTGAAG | 2 cut(s) | 80, 247 |
| AfaI | GTAC | 2 cut(s) | 1173, 1534 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 1654, 1896 |
| AflIII | ACRYGT | 1 cut(s) | 1071 |
| AgeI | ACCGGT | 1 cut(s) | 107 |
| AgsI | TTSAA | 8 cut(s) | 815, 992, 1037, 1278, 1295, 1346, 1618, 1981 |
| AjiI | CACGTC | 1 cut(s) | 217 |
| AjnI | CCWGG | 2 cut(s) | 1890, 1957 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 1338, 1345, 1370, 1377, 1787, 1819 |
| AluBI | AGCT | 8 cut(s) | 289, 447, 1061, 1193, 1499, 1507, 1828, 1968 |
| AluI | AGCT | 8 cut(s) | 289, 447, 1061, 1193, 1499, 1507, 1828, 1968 |
| Alw21I | GWGCWC | 1 cut(s) | 1509 |
| Alw26I | GTCTC | 3 cut(s) | 226, 683, 1265 |
| AlwI | GGATC | 3 cut(s) | 18, 1597, 2044 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 969 |
| Aor13HI | TCCGGA | 1 cut(s) | 164 |
| ApeKI | GCWGC | 3 cut(s) | 356, 1193, 1578 |
| ApoI | RAATTY | 7 cut(s) | 523, 680, 832, 1037, 1346, 1393, 1634 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 204, 236 |
| AsiGI | ACCGGT | 1 cut(s) | 107 |
| AspLEI | GCGC | 3 cut(s) | 760, 802, 871 |
| AspS9I | GGNCC | 2 cut(s) | 64, 674 |
| AsuC2I | CCSGG | 1 cut(s) | 323 |
| AsuHPI | GGTGA | 4 cut(s) | 320, 730, 1957, 2021 |
| AsuII | TTCGAA | 1 cut(s) | 195 |
| AvaII | GGWCC | 2 cut(s) | 64, 674 |
| BanI | GGYRCC | 1 cut(s) | 931 |
| BanII | GRGCYC | 1 cut(s) | 1509 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 343, 375 |
| Bbv12I | GWGCWC | 1 cut(s) | 1509 |
| BbvI | GCAGC | 3 cut(s) | 343, 1180, 1590 |
| BccI | CCATC | 4 cut(s) | 466, 922, 1397, 1599 |
| BceAI | ACGGC | 2 cut(s) | 259, 1674 |
| BciT130I | CCWGG | 2 cut(s) | 1892, 1959 |
| BciVI | GTATCC | 1 cut(s) | 2078 |
| BclI | TGATCA | 1 cut(s) | 1741 |
| BcnI | CCSGG | 1 cut(s) | 323 |
| BcoDI | GTCTC | 3 cut(s) | 226, 683, 1265 |
| BfaI | CTAG | 2 cut(s) | 1502, 1847 |
| BfmI | CTRYAG | 4 cut(s) | 970, 1210, 1882, 1963 |
| BfuI | GTATCC | 1 cut(s) | 2078 |
| BisI | GCNGC | 3 cut(s) | 357, 1194, 1579 |
| BlsI | GCNGC | 3 cut(s) | 358, 1195, 1580 |
| Bme1390I | CCNGG | 3 cut(s) | 323, 1892, 1959 |
| Bme18I | GGWCC | 2 cut(s) | 64, 674 |
| BmgBI | CACGTC | 1 cut(s) | 217 |
| BmgT120I | GGNCC | 2 cut(s) | 64, 674 |
| BmiI | GGNNCC | 3 cut(s) | 112, 675, 933 |
| BmrFI | CCNGG | 3 cut(s) | 323, 1892, 1959 |
| BmsI | GCATC | 9 cut(s) | 478, 594, 787, 1090, 1509, 1758, 1887, 2007, 2029 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 302, 334, 1826, 1858 |
| BpmI | CTGGAG | 1 cut(s) | 363 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1685 |
| Bpu14I | TTCGAA | 1 cut(s) | 195 |
| BpuEI | CTTGAG | 1 cut(s) | 1007 |
| BpuMI | CCSGG | 1 cut(s) | 323 |
| BsaAI | YACGTR | 2 cut(s) | 494, 1864 |
| BsaI | GGTCTC | 1 cut(s) | 226 |
| BsaJI | CCNNGG | 5 cut(s) | 321, 651, 1649, 1890, 1891 |
| BsaWI | WCCGGW | 2 cut(s) | 107, 164 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1155, 1185 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 1654, 1896 |
| Bse118I | RCCGGY | 1 cut(s) | 107 |
| Bse3DI | GCAATG | 6 cut(s) | 129, 567, 706, 858, 1464, 1641 |
| BseAI | TCCGGA | 1 cut(s) | 164 |
| BseBI | CCWGG | 2 cut(s) | 1892, 1959 |
| BseDI | CCNNGG | 5 cut(s) | 321, 651, 1649, 1890, 1891 |
| BseGI | GGATG | 7 cut(s) | 493, 609, 933, 1610, 1932, 2020, 2083 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 1654, 1896 |
| BseMI | GCAATG | 6 cut(s) | 129, 567, 706, 858, 1464, 1641 |
| BseMII | CTCAG | 1 cut(s) | 1676 |
| BseRI | GAGGAG | 4 cut(s) | 106, 262, 632, 1529 |
| BseXI | GCAGC | 3 cut(s) | 343, 1180, 1590 |
| BseYI | CCCAGC | 1 cut(s) | 1694 |
| BsgI | GTGCAG | 1 cut(s) | 897 |
| Bsh1236I | CGCG | 1 cut(s) | 653 |
| Bsh1285I | CGRYCG | 1 cut(s) | 939 |
| BshNI | GGYRCC | 1 cut(s) | 931 |
| BshTI | ACCGGT | 1 cut(s) | 107 |
| BsiEI | CGRYCG | 1 cut(s) | 939 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1509 |
| BsiSI | CCGG | 5 cut(s) | 108, 165, 323, 1541, 1818 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 1654, 1896 |
| BsmAI | GTCTC | 3 cut(s) | 226, 683, 1265 |
| BsmI | GAATGC | 4 cut(s) | 760, 1221, 1431, 1459 |
| Bso31I | GGTCTC | 1 cut(s) | 226 |
| Bsp119I | TTCGAA | 1 cut(s) | 195 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1509 |
| Bsp13I | TCCGGA | 1 cut(s) | 164 |
| Bsp1407I | TGTACA | 1 cut(s) | 1171 |
| Bsp143I | GATC | 5 cut(s) | 23, 1158, 1589, 1741, 2049 |
| BspACI | CCGC | 7 cut(s) | 304, 651, 653, 671, 716, 1900, 1915 |
| BspCNI | CTCAG | 1 cut(s) | 1677 |
| BspEI | TCCGGA | 1 cut(s) | 164 |
| BspFNI | CGCG | 1 cut(s) | 653 |
| BspLI | GGNNCC | 3 cut(s) | 112, 675, 933 |
| BspPI | GGATC | 3 cut(s) | 18, 1597, 2044 |
| BspT104I | TTCGAA | 1 cut(s) | 195 |
| BspT107I | GGYRCC | 1 cut(s) | 931 |
| BspTNI | GGTCTC | 1 cut(s) | 226 |
| BsrBI | CCGCTC | 1 cut(s) | 1915 |
| BsrDI | GCAATG | 6 cut(s) | 129, 567, 706, 858, 1464, 1641 |
| BsrFI | RCCGGY | 1 cut(s) | 107 |
| BsrGI | TGTACA | 1 cut(s) | 1171 |
| BssAI | RCCGGY | 1 cut(s) | 107 |
| BssECI | CCNNGG | 5 cut(s) | 321, 651, 1649, 1890, 1891 |
| BssMI | GATC | 5 cut(s) | 23, 1158, 1589, 1741, 2049 |
| BssT1I | CCWWGG | 1 cut(s) | 1649 |
| Bst2UI | CCWGG | 2 cut(s) | 1892, 1959 |
| Bst4CI | ACNGT | 4 cut(s) | 403, 570, 819, 1211 |
| Bst6I | CTCTTC | 2 cut(s) | 624, 1976 |
| BstAUI | TGTACA | 1 cut(s) | 1171 |
| BstBAI | YACGTR | 2 cut(s) | 494, 1864 |
| BstBI | TTCGAA | 1 cut(s) | 195 |
| BstC8I | GCNNGC | 6 cut(s) | 302, 389, 698, 1576, 1669, 1844 |
| BstDEI | CTNAG | 3 cut(s) | 659, 803, 1685 |
| BstDSI | CCRYGG | 1 cut(s) | 651 |
| BstF5I | GGATG | 7 cut(s) | 493, 609, 933, 1610, 1932, 2020, 2083 |
| BstFNI | CGCG | 1 cut(s) | 653 |
| BstHHI | GCGC | 3 cut(s) | 760, 802, 871 |
| BstKTI | GATC | 5 cut(s) | 26, 1161, 1592, 1744, 2052 |
| BstMAI | GTCTC | 3 cut(s) | 226, 683, 1265 |
| BstMBI | GATC | 5 cut(s) | 23, 1158, 1589, 1741, 2049 |
| BstMCI | CGRYCG | 1 cut(s) | 939 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 413, 875 |
| BstNI | CCWGG | 2 cut(s) | 1892, 1959 |
| BstNSI | RCATGY | 4 cut(s) | 304, 916, 1075, 1275 |
| BstSCI | CCNGG | 3 cut(s) | 321, 1890, 1957 |
| BstSFI | CTRYAG | 4 cut(s) | 970, 1210, 1882, 1963 |
| BstUI | CGCG | 1 cut(s) | 653 |
| BstV1I | GCAGC | 3 cut(s) | 343, 1180, 1590 |
| BstX2I | RGATCY | 2 cut(s) | 1589, 2049 |
| BstYI | RGATCY | 2 cut(s) | 1589, 2049 |
| BsuI | GTATCC | 1 cut(s) | 2078 |
| BtgI | CCRYGG | 1 cut(s) | 651 |
| BtrI | CACGTC | 1 cut(s) | 217 |
| BtsCI | GGATG | 7 cut(s) | 493, 609, 933, 1610, 1932, 2020, 2083 |
| BtsIMutI | CAGTG | 1 cut(s) | 970 |
| Cac8I | GCNNGC | 6 cut(s) | 302, 389, 698, 1576, 1669, 1844 |
| CaiI | CAGNNNCTG | 1 cut(s) | 969 |
| CfoI | GCGC | 3 cut(s) | 760, 802, 871 |
| Cfr10I | RCCGGY | 1 cut(s) | 107 |
| Cfr13I | GGNCC | 2 cut(s) | 64, 674 |
| Cfr42I | CCGCGG | 1 cut(s) | 654 |
| CseI | GACGC | 2 cut(s) | 112, 306 |
| Csp6I | GTAC | 2 cut(s) | 1172, 1533 |
| CspAI | ACCGGT | 1 cut(s) | 107 |
| CviAII | CATG | 9 cut(s) | 225, 301, 843, 913, 1072, 1272, 1672, 1745, 1994 |
| CviQI | GTAC | 2 cut(s) | 1172, 1533 |
| DdeI | CTNAG | 3 cut(s) | 659, 803, 1685 |
| DpnI | GATC | 5 cut(s) | 25, 1160, 1591, 1743, 2051 |
| DpnII | GATC | 5 cut(s) | 23, 1158, 1589, 1741, 2049 |
| Eam1104I | CTCTTC | 2 cut(s) | 624, 1976 |
| EarI | CTCTTC | 2 cut(s) | 624, 1976 |
| Ecl136II | GAGCTC | 1 cut(s) | 1507 |
| Eco130I | CCWWGG | 1 cut(s) | 1649 |
| Eco24I | GRGCYC | 1 cut(s) | 1509 |
| Eco31I | GGTCTC | 1 cut(s) | 226 |
| Eco32I | GATATC | 2 cut(s) | 858, 1464 |
| Eco47I | GGWCC | 2 cut(s) | 64, 674 |
| Eco53kI | GAGCTC | 1 cut(s) | 1507 |
| Eco57I | CTGAAG | 2 cut(s) | 80, 247 |
| EcoICRI | GAGCTC | 1 cut(s) | 1507 |
| EcoO109I | RGGNCCY | 2 cut(s) | 64, 674 |
| EcoRI | GAATTC | 3 cut(s) | 523, 832, 1037 |
| EcoRII | CCWGG | 2 cut(s) | 1890, 1957 |
| EcoRV | GATATC | 2 cut(s) | 858, 1464 |
| EcoT14I | CCWWGG | 1 cut(s) | 1649 |
| EcoT22I | ATGCAT | 2 cut(s) | 918, 2022 |
| EcoT38I | GRGCYC | 1 cut(s) | 1509 |
| ErhI | CCWWGG | 1 cut(s) | 1649 |
| FaeI | CATG | 9 cut(s) | 228, 304, 846, 916, 1075, 1275, 1675, 1748, 1997 |
| FatI | CATG | 9 cut(s) | 224, 300, 842, 912, 1071, 1271, 1671, 1744, 1993 |
| FauI | CCCGC | 4 cut(s) | 297, 664, 1893, 1908 |
| FauNDI | CATATG | 4 cut(s) | 364, 1584, 1813, 2070 |
| FbaI | TGATCA | 1 cut(s) | 1741 |
| FblI | GTMKAC | 1 cut(s) | 126 |
| Fnu4HI | GCNGC | 3 cut(s) | 357, 1194, 1579 |
| FokI | GGATG | 7 cut(s) | 500, 616, 940, 1617, 1939, 2007, 2090 |
| FriOI | GRGCYC | 1 cut(s) | 1509 |
| Fsp4HI | GCNGC | 3 cut(s) | 357, 1194, 1579 |
| FspBI | CTAG | 2 cut(s) | 1502, 1847 |
| FspI | TGCGCA | 1 cut(s) | 870 |
| GlaI | GCGC | 3 cut(s) | 759, 801, 870 |
| GluI | GCNGC | 3 cut(s) | 357, 1194, 1579 |
| GsaI | CCCAGC | 1 cut(s) | 1698 |
| GsuI | CTGGAG | 1 cut(s) | 363 |
| HapII | CCGG | 5 cut(s) | 108, 165, 323, 1541, 1818 |
| HgaI | GACGC | 2 cut(s) | 112, 306 |
| HhaI | GCGC | 3 cut(s) | 760, 802, 871 |
| Hin1II | CATG | 9 cut(s) | 228, 304, 846, 916, 1075, 1275, 1675, 1748, 1997 |
| Hin6I | GCGC | 3 cut(s) | 758, 800, 869 |
| HinP1I | GCGC | 3 cut(s) | 758, 800, 869 |
| HincII | GTYRAC | 1 cut(s) | 1069 |
| HindII | GTYRAC | 1 cut(s) | 1069 |
| HinfI | GANTC | 7 cut(s) | 326, 703, 881, 1335, 1727, 1850, 1984 |
| HpaII | CCGG | 5 cut(s) | 108, 165, 323, 1541, 1818 |
| HphI | GGTGA | 4 cut(s) | 320, 730, 1957, 2021 |
| Hpy166II | GTNNAC | 3 cut(s) | 127, 397, 1069 |
| Hpy188I | TCNGA | 7 cut(s) | 60, 266, 910, 1107, 1163, 1794, 2054 |
| Hpy188III | TCNNGA | 9 cut(s) | 165, 677, 766, 989, 1264, 1343, 1502, 1618, 1684 |
| Hpy8I | GTNNAC | 3 cut(s) | 127, 397, 1069 |
| Hpy99I | CGWCG | 1 cut(s) | 300 |
| HpyAV | CCTTC | 5 cut(s) | 55, 2049, 2068, 2075, 2103 |
| HpyCH4III | ACNGT | 4 cut(s) | 403, 570, 819, 1211 |
| HpyCH4IV | ACGT | 4 cut(s) | 156, 216, 493, 1863 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 413, 875 |
| HpyF3I | CTNAG | 3 cut(s) | 659, 803, 1685 |
| HpySE526I | ACGT | 4 cut(s) | 156, 216, 493, 1863 |
| Hsp92II | CATG | 9 cut(s) | 228, 304, 846, 916, 1075, 1275, 1675, 1748, 1997 |
| HspAI | GCGC | 3 cut(s) | 758, 800, 869 |
| Kpn2I | TCCGGA | 1 cut(s) | 164 |
| Ksp22I | TGATCA | 1 cut(s) | 1741 |
| KspI | CCGCGG | 1 cut(s) | 654 |
| Kzo9I | GATC | 5 cut(s) | 23, 1158, 1589, 1741, 2049 |
| LmnI | GCTCC | 3 cut(s) | 286, 1657, 1808 |
| Lsp1109I | GCAGC | 3 cut(s) | 343, 1180, 1590 |
| LweI | GCATC | 9 cut(s) | 478, 594, 787, 1090, 1509, 1758, 1887, 2007, 2029 |
| MaeI | CTAG | 2 cut(s) | 1502, 1847 |
| MaeII | ACGT | 4 cut(s) | 156, 216, 493, 1863 |
| MaeIII | GTNAC | 6 cut(s) | 14, 529, 763, 974, 1490, 1549 |
| MalI | GATC | 5 cut(s) | 25, 1160, 1591, 1743, 2051 |
| MbiI | CCGCTC | 1 cut(s) | 1915 |
| MboI | GATC | 5 cut(s) | 23, 1158, 1589, 1741, 2049 |
| MboII | GAAGA | 5 cut(s) | 638, 641, 1412, 1916, 1993 |
| MfeI | CAATTG | 1 cut(s) | 1353 |
| MflI | RGATCY | 2 cut(s) | 1589, 2049 |
| MhlI | GDGCHC | 1 cut(s) | 1509 |
| MlyI | GAGTC | 2 cut(s) | 1736, 1993 |
| MmeI | TCCRAC | 3 cut(s) | 67, 264, 421 |
| Mph1103I | ATGCAT | 2 cut(s) | 918, 2022 |
| MroI | TCCGGA | 1 cut(s) | 164 |
| MseI | TTAA | 5 cut(s) | 411, 456, 1326, 1772, 2060 |
| MspA1I | CMGCKG | 1 cut(s) | 653 |
| MspI | CCGG | 5 cut(s) | 108, 165, 323, 1541, 1818 |
| MspR9I | CCNGG | 3 cut(s) | 323, 1892, 1959 |
| MunI | CAATTG | 1 cut(s) | 1353 |
| Mva1269I | GAATGC | 4 cut(s) | 760, 1221, 1431, 1459 |
| MvaI | CCWGG | 2 cut(s) | 1892, 1959 |
| MvnI | CGCG | 1 cut(s) | 653 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 413, 875 |
| NciI | CCSGG | 1 cut(s) | 323 |
| NdeI | CATATG | 4 cut(s) | 364, 1584, 1813, 2070 |
| NdeII | GATC | 5 cut(s) | 23, 1158, 1589, 1741, 2049 |
| NlaIII | CATG | 9 cut(s) | 228, 304, 846, 916, 1075, 1275, 1675, 1748, 1997 |
| NlaIV | GGNNCC | 3 cut(s) | 112, 675, 933 |
| NmuCI | GTSAC | 3 cut(s) | 14, 763, 974 |
| NsbI | TGCGCA | 1 cut(s) | 870 |
| NsiI | ATGCAT | 2 cut(s) | 918, 2022 |
| NspI | RCATGY | 4 cut(s) | 304, 916, 1075, 1275 |
| NspV | TTCGAA | 1 cut(s) | 195 |
| PaeI | GCATGC | 1 cut(s) | 304 |
| PasI | CCCWGGG | 1 cut(s) | 1891 |
| PciI | ACATGT | 1 cut(s) | 1071 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 773 |
| PctI | GAATGC | 4 cut(s) | 760, 1221, 1431, 1459 |
| PfeI | GAWTC | 5 cut(s) | 326, 703, 881, 1335, 1850 |
| PflFI | GACNNNGTC | 1 cut(s) | 218 |
| PinAI | ACCGGT | 1 cut(s) | 107 |
| PkrI | GCNGC | 3 cut(s) | 358, 1195, 1580 |
| PleI | GAGTC | 2 cut(s) | 1735, 1992 |
| PpsI | GAGTC | 2 cut(s) | 1735, 1992 |
| Ppu21I | YACGTR | 2 cut(s) | 494, 1864 |
| PpuMI | RGGWCCY | 2 cut(s) | 64, 674 |
| PscI | ACATGT | 1 cut(s) | 1071 |
| Psp124BI | GAGCTC | 1 cut(s) | 1509 |
| Psp5II | RGGWCCY | 2 cut(s) | 64, 674 |
| Psp6I | CCWGG | 2 cut(s) | 1890, 1957 |
| PspFI | CCCAGC | 1 cut(s) | 1694 |
| PspGI | CCWGG | 2 cut(s) | 1890, 1957 |
| PspN4I | GGNNCC | 3 cut(s) | 112, 675, 933 |
| PspPI | GGNCC | 2 cut(s) | 64, 674 |
| PspPPI | RGGWCCY | 2 cut(s) | 64, 674 |
| PstNI | CAGNNNCTG | 1 cut(s) | 969 |
| PsuI | RGATCY | 2 cut(s) | 1589, 2049 |
| PsyI | GACNNNGTC | 1 cut(s) | 218 |
| RsaI | GTAC | 2 cut(s) | 1173, 1534 |
| RsaNI | GTAC | 2 cut(s) | 1172, 1533 |
| SacI | GAGCTC | 1 cut(s) | 1509 |
| SacII | CCGCGG | 1 cut(s) | 654 |
| SaqAI | TTAA | 5 cut(s) | 411, 456, 1326, 1772, 2060 |
| SatI | GCNGC | 3 cut(s) | 357, 1194, 1579 |
| Sau3AI | GATC | 5 cut(s) | 23, 1158, 1589, 1741, 2049 |
| Sau96I | GGNCC | 2 cut(s) | 64, 674 |
| SchI | GAGTC | 2 cut(s) | 1736, 1993 |
| ScrFI | CCNGG | 3 cut(s) | 323, 1892, 1959 |
| SduI | GDGCHC | 1 cut(s) | 1509 |
| SfaNI | GCATC | 9 cut(s) | 478, 594, 787, 1090, 1509, 1758, 1887, 2007, 2029 |
| SfcI | CTRYAG | 4 cut(s) | 970, 1210, 1882, 1963 |
| Sfr303I | CCGCGG | 1 cut(s) | 654 |
| SfuI | TTCGAA | 1 cut(s) | 195 |
| SgrBI | CCGCGG | 1 cut(s) | 654 |
| SinI | GGWCC | 2 cut(s) | 64, 674 |
| SmlI | CTYRAG | 1 cut(s) | 1022 |
| SmoI | CTYRAG | 1 cut(s) | 1022 |
| SphI | GCATGC | 1 cut(s) | 304 |
| SsiI | CCGC | 7 cut(s) | 304, 651, 653, 671, 716, 1900, 1915 |
| SspMI | CTAG | 2 cut(s) | 1502, 1847 |
| SstI | GAGCTC | 1 cut(s) | 1509 |
| StyD4I | CCNGG | 3 cut(s) | 321, 1890, 1957 |
| StyI | CCWWGG | 1 cut(s) | 1649 |
| TaaI | ACNGT | 4 cut(s) | 403, 570, 819, 1211 |
| TaiI | ACGT | 4 cut(s) | 159, 219, 496, 1866 |
| TaqI | TCGA | 5 cut(s) | 195, 295, 504, 1783, 1939 |
| TaqII | GACCGA | 1 cut(s) | 953 |
| TatI | WGTACW | 1 cut(s) | 1171 |
| TfiI | GAWTC | 5 cut(s) | 326, 703, 881, 1335, 1850 |
| Tru1I | TTAA | 5 cut(s) | 411, 456, 1326, 1772, 2060 |
| Tru9I | TTAA | 5 cut(s) | 411, 456, 1326, 1772, 2060 |
| TscAI | CASTG | 1 cut(s) | 970 |
| TseFI | GTSAC | 3 cut(s) | 14, 763, 974 |
| TseI | GCWGC | 3 cut(s) | 356, 1193, 1578 |
| Tsp45I | GTSAC | 3 cut(s) | 14, 763, 974 |
| TspGWI | ACGGA | 1 cut(s) | 616 |
| TspRI | CASTG | 1 cut(s) | 970 |
| Tth111I | GACNNNGTC | 1 cut(s) | 218 |
| VpaK11BI | GGWCC | 2 cut(s) | 64, 674 |
| XapI | RAATTY | 7 cut(s) | 523, 680, 832, 1037, 1346, 1393, 1634 |
| XbaI | TCTAGA | 1 cut(s) | 1501 |
| XceI | RCATGY | 4 cut(s) | 304, 916, 1075, 1275 |
| XmiI | GTMKAC | 1 cut(s) | 126 |
| XspI | CTAG | 2 cut(s) | 1502, 1847 |
| Zsp2I | ATGCAT | 2 cut(s) | 918, 2022 |