Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0000899

Physical Location & Seq

Genomic Coordinates Reverse (-)

48312433 .. 48315896

Gene Structure 3464 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00200860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGGCCTTGACATTAGCCAATGCTCCACGTTCGGAAGGAAAAAGAGTTGCTAAAGATAATGCAGTGAATAATTATGATGTGGACGTCAAGATGAATCCTGATCATCTACTGTTTTCCAGCGAAAATGTGAATACTCTCCTTTTGGTGTCGACACTTGTGGCTGCTATAACATTGGCTGCTGGCTTTACTGTGCCTGGTGCATATAAGAACTCTGGAAGTGACGAAGGCATGGCAACATTGCGTAACACAGCACTATTCCAAATATTCTTGATATGCAACACCATTGCAATGTACAGCTCCATCACGGTTGCGATTGCGCTTAGCTGGGCACAAACGGCTGGTGTTGATCCTGTACCGAGTAACCTTACTTGTGGCTATGCTGTTGTGGCCCTAGGCTCATTTTTCATTGTCCAAGTAGTTATATTCATTGTTCCACTCACCGTCCCACTTTCCTCCAAGAACTACACGCATAACACGCTTCATCTTACGTGCCATGAAAACTACACTGCCAATAGCCCATATGATGCACACTTGACTCGGTTATTCATCCTTTTACAGACCAAAGTTCCTCCTACCGGTTTCGGCCTTGCTTCTACTGGTCAAGGCCAAAAGAAAGCAAATGGCCTTGCACTTTGCCGAGGCGATGTCTCAAGTGAAGATTGCACTACTTGTGTGGTTGATGCAAGCAAAGATATTAGAGAGTTCTGCCCCAACAGCAAAGGAGCCATAATATGGTATGACCACTGCCTCTTAAAGTACTCAAATGTGGACTTCTTTGGGAAAATTGATAACAAAAACAAGTTCTATATGTGGAACGTTCAAGAAGTACAGAATCCCACACTATTCGATGAGAGAGTTAAGGAATTGTTGAGTGGATTAGCTGTTGGAGCCTCTGATGGTAGTGCTAATCCGAAGTTTTATGCAACTGGTGAGCTGCAACTTGATACATTCACAACACTATATGGTTTGGCTACATGCACAAGGGACCTCTCAGCCCCAGACTGTAAGAAGTGTCTTGATGGTGCAATAAGCGAATTGCCAAACTGCTGCAATGCAAAGCGAGGTGGGCGCGTTGTGGGTGGGAGTTGTAATGTTGGATTTGAACTTTACCCCATTGTTGGGACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0030312 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071944 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1204 Stress-antifung

Protein Analysis

375

Amino Acids

40.37

Weight (kDa)

6.08

Isoelectric Point (pI)

33.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PGG	PF13962	41 - 115	1.6e-19	Domain of unknown function
Stress-antifung	PF01657	164 - 255	5.3e-22	Salt stress response/antifungal
Stress-antifung	PF01657	277 - 369	7.8e-11	Salt stress response/antifungal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000899)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22060
fragaria_vesca	FvH4_2g10161
malus_domestica	MD05G1056000.v1.1 MD05G1056300.v1.1 MD10G1064400.v1.1
prunus_persica	Prupe.3G109800_v2.0.a1 Prupe.3G110100_v2.0.a1 Prupe.3G110200_v2.0.a1 Prupe.3G110300_v2.0.a1 Prupe.8G086600_v2.0.a1
pyrus_communis	pycom05g04770 pycom05g04780
rosa_chinensis	RchiOBHm_Chr1g0328011 RchiOBHm_Chr1g0328031 RchiOBHm_Chr2g0158681 RchiOBHm_Chr2g0160231 RchiOBHm_Chr2g0160251
rosa_laevigata	RLG00000014015 RLG00000021106 RLG00000021206 RLG00000021207 RLG00000029943 RLG00000029944 RLG00000029946 RLG00000029948
rosa_multiflora	Rmu_co8269469.1_g000001 Rmu_co8408147.1_g000001 Rmu_sc0000403.1_g000003 Rmu_sc0008269.1_g000008 Rmu_sc0020806.1_g000002
rosa_roxburghii	Rroxscaffold_2G00091070 Rroxscaffold_2G00091110 Rroxscaffold_4G00321960 Rroxscaffold_4G00321970 Rroxscaffold_4G00321980 Rroxscaffold_4G00322000 Rroxscaffold_4G00322030 Rroxscaffold_7G00200860 Rroxscaffold_7G00200940
rosa_rugosa	Rorug01G0073200 Rorug01G0073200 Rorug01G0073300 Rorug02G0471400 Rorug02G0472000 Rorug02G0482400 Rorug02G0482400
rosa_samantha	Rh1BG071900 Rh1BG072100 Rh2AG537200 Rh2AG547800 Rh2BG550400 Rh2BG561200 Rh2BG561400 Rh2CG520900 Rh2CG531800 Rh2CG532100 Rh6AG153200 Rh6CG149000
rosa_wichuraiana	Rw0G019500 Rw1G006970 Rw1G006980 Rw1G006990 Rw2G044480 Rw2G045320 Rw6G013180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	87
AccB7I	CCANNNNNTGG	1 cut(s)	732
AccI	GTMKAC	1 cut(s)	149
AccII	CGCG	1 cut(s)	1071
AclI	AACGTT	1 cut(s)	816
AclWI	GGATC	1 cut(s)	341
AcyI	GRCGYC	1 cut(s)	84
AfaI	GTAC	4 cut(s)	293, 354, 758, 828
AfiI	CCNNNNNNNGG	4 cut(s)	575, 732, 1118, 1119
AgeI	ACCGGT	1 cut(s)	575
AgsI	TTSAA	2 cut(s)	821, 1103
AjnI	CCWGG	1 cut(s)	193
AluBI	AGCT	4 cut(s)	297, 324, 881, 934
AluI	AGCT	4 cut(s)	297, 324, 881, 934
Alw26I	GTCTC	1 cut(s)	652
AlwI	GGATC	1 cut(s)	341
AoxI	GGCC	5 cut(s)	3, 387, 583, 604, 622
ApeKI	GCWGC	4 cut(s)	161, 176, 934, 1047
AsiGI	ACCGGT	1 cut(s)	575
AspA2I	CCTAGG	1 cut(s)	391
AspLEI	GCGC	2 cut(s)	319, 1071
AspS9I	GGNCC	2 cut(s)	388, 985
AsuHPI	GGTGA	2 cut(s)	430, 941
AvaII	GGWCC	1 cut(s)	985
AvrII	CCTAGG	1 cut(s)	391
BaeGI	GKGCMC	1 cut(s)	331
BbvI	GCAGC	4 cut(s)	148, 163, 921, 1034
BccI	CCATC	3 cut(s)	308, 890, 1013
BceAI	ACGGC	1 cut(s)	351
BciT130I	CCWGG	1 cut(s)	195
BclI	TGATCA	1 cut(s)	100
BcoDI	GTCTC	1 cut(s)	652
BfaI	CTAG	1 cut(s)	392
BisI	GCNGC	4 cut(s)	162, 177, 935, 1048
BlnI	CCTAGG	1 cut(s)	391
BlpI	GCTNAGC	1 cut(s)	320
BlsI	GCNGC	4 cut(s)	163, 178, 936, 1049
BmcAI	AGTACT	1 cut(s)	758
Bme1390I	CCNGG	1 cut(s)	195
Bme18I	GGWCC	1 cut(s)	985
BmgT120I	GGNCC	2 cut(s)	388, 985
BmiI	GGNNCC	3 cut(s)	724, 889, 986
BmrFI	CCNGG	1 cut(s)	195
BmsI	GCATC	2 cut(s)	514, 670
Bpu1102I	GCTNAGC	1 cut(s)	320
BpuEI	CTTGAG	1 cut(s)	634
BsaAI	YACGTR	1 cut(s)	489
BsaHI	GRCGYC	1 cut(s)	84
BsaJI	CCNNGG	2 cut(s)	391, 637
BsaWI	WCCGGW	1 cut(s)	575
Bsc4I	CCNNNNNNNGG	4 cut(s)	575, 732, 1118, 1119
Bse118I	RCCGGY	1 cut(s)	575
Bse1I	ACTGG	2 cut(s)	601, 931
Bse3DI	GCAATG	4 cut(s)	236, 282, 294, 1057
BseBI	CCWGG	1 cut(s)	195
BseDI	CCNNGG	2 cut(s)	391, 637
BseGI	GGATG	1 cut(s)	546
BseLI	CCNNNNNNNGG	4 cut(s)	575, 732, 1118, 1119
BseMI	GCAATG	4 cut(s)	236, 282, 294, 1057
BseMII	CTCAG	1 cut(s)	1005
BseNI	ACTGG	2 cut(s)	601, 931
BseSI	GKGCMC	1 cut(s)	331
BseXI	GCAGC	4 cut(s)	148, 163, 921, 1034
BseYI	CCCAGC	1 cut(s)	324
Bsh1236I	CGCG	1 cut(s)	1071
BshFI	GGCC	5 cut(s)	5, 389, 585, 606, 624
BshTI	ACCGGT	1 cut(s)	575
BsiSI	CCGG	1 cut(s)	576
BslFI	GGGAC	2 cut(s)	428, 998
BslI	CCNNNNNNNGG	4 cut(s)	575, 732, 1118, 1119
BsmAI	GTCTC	1 cut(s)	652
BsmFI	GGGAC	2 cut(s)	428, 998
BsnI	GGCC	5 cut(s)	5, 389, 585, 606, 624
Bsp1286I	GDGCHC	1 cut(s)	331
Bsp1407I	TGTACA	1 cut(s)	291
Bsp143I	GATC	2 cut(s)	100, 346
Bsp1720I	GCTNAGC	1 cut(s)	320
BspANI	GGCC	5 cut(s)	5, 389, 585, 606, 624
BspCNI	CTCAG	1 cut(s)	1004
BspFNI	CGCG	1 cut(s)	1071
BspLI	GGNNCC	3 cut(s)	724, 889, 986
BspPI	GGATC	1 cut(s)	341
BsrDI	GCAATG	4 cut(s)	236, 282, 294, 1057
BsrFI	RCCGGY	1 cut(s)	575
BsrGI	TGTACA	1 cut(s)	291
BsrI	ACTGG	2 cut(s)	601, 931
BssAI	RCCGGY	1 cut(s)	575
BssECI	CCNNGG	2 cut(s)	391, 637
BssMI	GATC	2 cut(s)	100, 346
BssNI	GRCGYC	1 cut(s)	84
BssT1I	CCWWGG	1 cut(s)	391
Bst2UI	CCWGG	1 cut(s)	195
Bst4CI	ACNGT	5 cut(s)	111, 190, 307, 442, 1004
BstACI	GRCGYC	1 cut(s)	84
BstAUI	TGTACA	1 cut(s)	291
BstBAI	YACGTR	1 cut(s)	489
BstC8I	GCNNGC	2 cut(s)	181, 685
BstDEI	CTNAG	2 cut(s)	320, 991
BstF5I	GGATG	1 cut(s)	546
BstFNI	CGCG	1 cut(s)	1071
BstHHI	GCGC	2 cut(s)	319, 1071
BstKTI	GATC	2 cut(s)	103, 349
BstMAI	GTCTC	1 cut(s)	652
BstMBI	GATC	2 cut(s)	100, 346
BstMWI	GCNNNNNNNGC	6 cut(s)	335, 386, 475, 714, 887, 1066
BstNI	CCWGG	1 cut(s)	195
BstNSI	RCATGY	1 cut(s)	978
BstSCI	CCNGG	1 cut(s)	193
BstSLI	GKGCMC	1 cut(s)	331
BstUI	CGCG	1 cut(s)	1071
BstV1I	GCAGC	4 cut(s)	148, 163, 921, 1034
BsuRI	GGCC	5 cut(s)	5, 389, 585, 606, 624
BtgZI	GCGATG	1 cut(s)	657
BtsCI	GGATG	1 cut(s)	546
BtsI	GCAGTG	3 cut(s)	69, 504, 742
BtsIMutI	CAGTG	3 cut(s)	69, 504, 742
Cac8I	GCNNGC	2 cut(s)	181, 685
CfoI	GCGC	2 cut(s)	319, 1071
Cfr10I	RCCGGY	1 cut(s)	575
Cfr13I	GGNCC	2 cut(s)	388, 985
Csp6I	GTAC	4 cut(s)	292, 353, 757, 827
CspAI	ACCGGT	1 cut(s)	575
CviAII	CATG	3 cut(s)	229, 494, 975
CviQI	GTAC	4 cut(s)	292, 353, 757, 827
DdeI	CTNAG	2 cut(s)	320, 991
DpnI	GATC	2 cut(s)	102, 348
DpnII	GATC	2 cut(s)	100, 346
Eco130I	CCWWGG	1 cut(s)	391
Eco47I	GGWCC	1 cut(s)	985
EcoO109I	RGGNCCY	1 cut(s)	985
EcoRII	CCWGG	1 cut(s)	193
EcoT14I	CCWWGG	1 cut(s)	391
ErhI	CCWWGG	1 cut(s)	391
FaeI	CATG	3 cut(s)	232, 497, 978
FaqI	GGGAC	2 cut(s)	428, 998
FatI	CATG	3 cut(s)	228, 493, 974
FauNDI	CATATG	1 cut(s)	520
FbaI	TGATCA	1 cut(s)	100
FblI	GTMKAC	1 cut(s)	149
Fnu4HI	GCNGC	4 cut(s)	162, 177, 935, 1048
FokI	GGATG	1 cut(s)	533
Fsp4HI	GCNGC	4 cut(s)	162, 177, 935, 1048
FspBI	CTAG	1 cut(s)	392
GlaI	GCGC	2 cut(s)	318, 1070
GluI	GCNGC	4 cut(s)	162, 177, 935, 1048
GsaI	CCCAGC	1 cut(s)	328
HaeIII	GGCC	5 cut(s)	5, 389, 585, 606, 624
HapII	CCGG	1 cut(s)	576
HhaI	GCGC	2 cut(s)	319, 1071
Hin1I	GRCGYC	1 cut(s)	84
Hin1II	CATG	3 cut(s)	232, 497, 978
Hin6I	GCGC	2 cut(s)	317, 1069
HinP1I	GCGC	2 cut(s)	317, 1069
HincII	GTYRAC	1 cut(s)	150
HindII	GTYRAC	1 cut(s)	150
HinfI	GANTC	3 cut(s)	94, 535, 832
HpaII	CCGG	1 cut(s)	576
HphI	GGTGA	2 cut(s)	430, 941
Hpy166II	GTNNAC	3 cut(s)	82, 150, 769
Hpy188I	TCNGA	3 cut(s)	34, 895, 912
Hpy188III	TCNNGA	6 cut(s)	88, 98, 213, 268, 821, 1016
Hpy8I	GTNNAC	3 cut(s)	82, 150, 769
HpyAV	CCTTC	2 cut(s)	29, 218
HpyCH4III	ACNGT	5 cut(s)	111, 190, 307, 442, 1004
HpyCH4IV	ACGT	4 cut(s)	28, 84, 488, 816
HpyF10VI	GCNNNNNNNGC	6 cut(s)	335, 386, 475, 714, 887, 1066
HpyF3I	CTNAG	2 cut(s)	320, 991
HpySE526I	ACGT	4 cut(s)	28, 84, 488, 816
Hsp92I	GRCGYC	1 cut(s)	84
Hsp92II	CATG	3 cut(s)	232, 497, 978
HspAI	GCGC	2 cut(s)	317, 1069
Ksp22I	TGATCA	1 cut(s)	100
Kzo9I	GATC	2 cut(s)	100, 346
LmnI	GCTCC	4 cut(s)	28, 302, 722, 887
Lsp1109I	GCAGC	4 cut(s)	148, 163, 921, 1034
LweI	GCATC	2 cut(s)	514, 670
MaeI	CTAG	1 cut(s)	392
MaeII	ACGT	4 cut(s)	28, 84, 488, 816
MaeIII	GTNAC	3 cut(s)	218, 242, 359
MalI	GATC	2 cut(s)	102, 348
MboI	GATC	2 cut(s)	100, 346
MboII	GAAGA	1 cut(s)	668
MhlI	GDGCHC	1 cut(s)	331
MluCI	AATT	4 cut(s)	70, 783, 863, 1034
MlyI	GAGTC	1 cut(s)	529
MmeI	TCCRAC	2 cut(s)	865, 1075
MnlI	CCTC	7 cut(s)	463, 579, 632, 758, 901, 998, 1055
MseI	TTAA	2 cut(s)	752, 858
MslI	CAYNNNNRTG	1 cut(s)	287
MspI	CCGG	1 cut(s)	576
MspR9I	CCNGG	1 cut(s)	195
MvaI	CCWGG	1 cut(s)	195
MvnI	CGCG	1 cut(s)	1071
MwoI	GCNNNNNNNGC	6 cut(s)	335, 386, 475, 714, 887, 1066
NdeI	CATATG	1 cut(s)	520
NdeII	GATC	2 cut(s)	100, 346
NlaIII	CATG	3 cut(s)	232, 497, 978
NlaIV	GGNNCC	3 cut(s)	724, 889, 986
NmeAIII	GCCGAG	1 cut(s)	662
NmuCI	GTSAC	1 cut(s)	218
NspI	RCATGY	1 cut(s)	978
PfeI	GAWTC	2 cut(s)	94, 832
PflMI	CCANNNNNTGG	1 cut(s)	732
PinAI	ACCGGT	1 cut(s)	575
PkrI	GCNGC	4 cut(s)	163, 178, 936, 1049
PleI	GAGTC	1 cut(s)	529
PpsI	GAGTC	1 cut(s)	529
Ppu21I	YACGTR	1 cut(s)	489
PpuMI	RGGWCCY	1 cut(s)	985
Psp1406I	AACGTT	1 cut(s)	816
Psp5II	RGGWCCY	1 cut(s)	985
Psp6I	CCWGG	1 cut(s)	193
PspFI	CCCAGC	1 cut(s)	324
PspGI	CCWGG	1 cut(s)	193
PspN4I	GGNNCC	3 cut(s)	724, 889, 986
PspPI	GGNCC	2 cut(s)	388, 985
PspPPI	RGGWCCY	1 cut(s)	985
RsaI	GTAC	4 cut(s)	293, 354, 758, 828
RsaNI	GTAC	4 cut(s)	292, 353, 757, 827
RseI	CAYNNNNRTG	1 cut(s)	287
SalI	GTCGAC	1 cut(s)	148
SaqAI	TTAA	2 cut(s)	752, 858
SatI	GCNGC	4 cut(s)	162, 177, 935, 1048
Sau3AI	GATC	2 cut(s)	100, 346
Sau96I	GGNCC	2 cut(s)	388, 985
ScaI	AGTACT	1 cut(s)	758
SchI	GAGTC	1 cut(s)	529
ScrFI	CCNGG	1 cut(s)	195
SduI	GDGCHC	1 cut(s)	331
SfaNI	GCATC	2 cut(s)	514, 670
SinI	GGWCC	1 cut(s)	985
SmiMI	CAYNNNNRTG	1 cut(s)	287
SmlI	CTYRAG	1 cut(s)	649
SmoI	CTYRAG	1 cut(s)	649
Sse9I	AATT	4 cut(s)	70, 783, 863, 1034
SspI	AATATT	1 cut(s)	264
SspMI	CTAG	1 cut(s)	392
StyD4I	CCNGG	1 cut(s)	193
StyI	CCWWGG	1 cut(s)	391
TaaI	ACNGT	5 cut(s)	111, 190, 307, 442, 1004
TaiI	ACGT	4 cut(s)	31, 87, 491, 819
TaqI	TCGA	2 cut(s)	149, 846
TasI	AATT	4 cut(s)	70, 783, 863, 1034
TatI	WGTACW	3 cut(s)	291, 756, 826
TfiI	GAWTC	2 cut(s)	94, 832
Tru1I	TTAA	2 cut(s)	752, 858
Tru9I	TTAA	2 cut(s)	752, 858
TscAI	CASTG	3 cut(s)	69, 511, 749
TseFI	GTSAC	1 cut(s)	218
TseI	GCWGC	4 cut(s)	161, 176, 934, 1047
Tsp45I	GTSAC	1 cut(s)	218
TspDTI	ATGAA	6 cut(s)	107, 394, 415, 470, 510, 535
TspRI	CASTG	3 cut(s)	69, 511, 749
Van91I	CCANNNNNTGG	1 cut(s)	732
VpaK11BI	GGWCC	1 cut(s)	985
XceI	RCATGY	1 cut(s)	978
XmaJI	CCTAGG	1 cut(s)	391
XmiI	GTMKAC	1 cut(s)	149
XspI	CTAG	1 cut(s)	392
ZraI	GACGTC	1 cut(s)	85
ZrmI	AGTACT	1 cut(s)	758

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.