Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0000899

Physical Location & Seq

Genomic Coordinates Forward (+)

11934191 .. 11934481

Gene Structure 291 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0073300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGTGCTCTCCGAAGAATCATCTAGGCTCGTTTCACTGCAGTCTTCACAAGAATCAAGGGAGTGCAAATCATCACAATCACAACCAGACATCGTATCCCAACAACAGGCTGAACATGCGCAGATCAGCCATGACGAACTCGCTGGTTCGAATCAGTGAAGTTGAGGGCGAGTGGGTGAAGAGAGCCTTGACGGCTCTTATTCGTCCTTCTACACACCAGCAGAGGTGGAGAGCCAGGTTCCATCCATGGGAAAGCCGACTCTCTGTCATGTCCAAGGTCGATGCTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0030312 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071944 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1204 Stress-antifung

Protein Analysis

96

Amino Acids

11.19

Weight (kDa)

10.84

Isoelectric Point (pI)

48.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000899)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22060
fragaria_vesca	FvH4_2g10161
malus_domestica	MD05G1056000.v1.1 MD05G1056300.v1.1 MD10G1064400.v1.1
prunus_persica	Prupe.3G109800_v2.0.a1 Prupe.3G110100_v2.0.a1 Prupe.3G110200_v2.0.a1 Prupe.3G110300_v2.0.a1 Prupe.8G086600_v2.0.a1
pyrus_communis	pycom05g04770 pycom05g04780
rosa_chinensis	RchiOBHm_Chr1g0328011 RchiOBHm_Chr1g0328031 RchiOBHm_Chr2g0158681 RchiOBHm_Chr2g0160231 RchiOBHm_Chr2g0160251
rosa_laevigata	RLG00000014015 RLG00000021106 RLG00000021206 RLG00000021207 RLG00000029943 RLG00000029944 RLG00000029946 RLG00000029948
rosa_multiflora	Rmu_co8269469.1_g000001 Rmu_co8408147.1_g000001 Rmu_sc0000403.1_g000003 Rmu_sc0008269.1_g000008 Rmu_sc0020806.1_g000002
rosa_roxburghii	Rroxscaffold_2G00091070 Rroxscaffold_2G00091110 Rroxscaffold_4G00321960 Rroxscaffold_4G00321970 Rroxscaffold_4G00321980 Rroxscaffold_4G00322000 Rroxscaffold_4G00322030 Rroxscaffold_7G00200860 Rroxscaffold_7G00200940
rosa_rugosa	Rorug01G0073200 Rorug01G0073200 Rorug01G0073300 Rorug02G0471400 Rorug02G0472000 Rorug02G0482400 Rorug02G0482400
rosa_samantha	Rh1BG071900 Rh1BG072100 Rh2AG537200 Rh2AG547800 Rh2BG550400 Rh2BG561200 Rh2BG561400 Rh2CG520900 Rh2CG531800 Rh2CG532100 Rh6AG153200 Rh6CG149000
rosa_wichuraiana	Rw0G019500 Rw1G006970 Rw1G006980 Rw1G006990 Rw2G044480 Rw2G045320 Rw6G013180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	119
AfiI	CCNNNNNNNGG	2 cut(s)	105, 247
AhdI	GACNNNNNGTC	1 cut(s)	263
AjnI	CCWGG	1 cut(s)	233
Alw21I	GWGCWC	1 cut(s)	8
AspLEI	GCGC	1 cut(s)	120
AsuHPI	GGTGA	1 cut(s)	187
AsuII	TTCGAA	1 cut(s)	148
BbsI	GAAGAC	1 cut(s)	35
Bbv12I	GWGCWC	1 cut(s)	8
BccI	CCATC	1 cut(s)	249
BceAI	ACGGC	1 cut(s)	207
BciT130I	CCWGG	1 cut(s)	235
BciVI	GTATCC	1 cut(s)	105
BfaI	CTAG	1 cut(s)	23
BfmI	CTRYAG	1 cut(s)	37
BfuI	GTATCC	1 cut(s)	105
BglI	GCCNNNNNGGC	1 cut(s)	191
Bme1390I	CCNGG	1 cut(s)	235
BmeRI	GACNNNNNGTC	1 cut(s)	263
BmiI	GGNNCC	1 cut(s)	239
BmrFI	CCNGG	1 cut(s)	235
BmsI	GCATC	1 cut(s)	271
BpiI	GAAGAC	1 cut(s)	35
Bpu14I	TTCGAA	1 cut(s)	148
BsaJI	CCNNGG	2 cut(s)	245, 273
Bsc4I	CCNNNNNNNGG	2 cut(s)	105, 247
BseBI	CCWGG	1 cut(s)	235
BseDI	CCNNGG	2 cut(s)	245, 273
BseGI	GGATG	1 cut(s)	241
BseLI	CCNNNNNNNGG	2 cut(s)	105, 247
BseMII	CTCAG	1 cut(s)	276
BsiHKAI	GWGCWC	1 cut(s)	8
BslI	CCNNNNNNNGG	2 cut(s)	105, 247
Bsp119I	TTCGAA	1 cut(s)	148
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	1 cut(s)	122
Bsp19I	CCATGG	1 cut(s)	245
BspCNI	CTCAG	1 cut(s)	277
BspLI	GGNNCC	1 cut(s)	239
BspMAI	CTGCAG	1 cut(s)	41
BspT104I	TTCGAA	1 cut(s)	148
BssECI	CCNNGG	2 cut(s)	245, 273
BssMI	GATC	1 cut(s)	122
BssT1I	CCWWGG	2 cut(s)	245, 273
Bst2UI	CCWGG	1 cut(s)	235
Bst6I	CTCTTC	1 cut(s)	173
BstBI	TTCGAA	1 cut(s)	148
BstDEI	CTNAG	1 cut(s)	285
BstDSI	CCRYGG	1 cut(s)	245
BstF5I	GGATG	1 cut(s)	241
BstHHI	GCGC	1 cut(s)	120
BstKTI	GATC	1 cut(s)	125
BstMBI	GATC	1 cut(s)	122
BstMWI	GCNNNNNNNGC	2 cut(s)	115, 191
BstNI	CCWGG	1 cut(s)	235
BstNSI	RCATGY	1 cut(s)	118
BstSCI	CCNGG	1 cut(s)	233
BstSFI	CTRYAG	1 cut(s)	37
BstV2I	GAAGAC	1 cut(s)	35
BsuI	GTATCC	1 cut(s)	105
BtgI	CCRYGG	1 cut(s)	245
BtsCI	GGATG	1 cut(s)	241
BtsI	GCAGTG	1 cut(s)	34
BtsIMutI	CAGTG	2 cut(s)	34, 160
CfoI	GCGC	1 cut(s)	120
CviAII	CATG	4 cut(s)	115, 130, 246, 268
CviJI	RGCY	7 cut(s)	27, 109, 128, 185, 194, 233, 255
CviKI_1	RGCY	7 cut(s)	27, 109, 128, 185, 194, 233, 255
DdeI	CTNAG	1 cut(s)	285
DpnI	GATC	1 cut(s)	124
DpnII	GATC	1 cut(s)	122
DriI	GACNNNNNGTC	1 cut(s)	263
Eam1104I	CTCTTC	1 cut(s)	173
Eam1105I	GACNNNNNGTC	1 cut(s)	263
EarI	CTCTTC	1 cut(s)	173
Eco130I	CCWWGG	2 cut(s)	245, 273
EcoRII	CCWGG	1 cut(s)	233
EcoT14I	CCWWGG	2 cut(s)	245, 273
ErhI	CCWWGG	2 cut(s)	245, 273
FaeI	CATG	4 cut(s)	118, 133, 249, 271
FaiI	YATR	4 cut(s)	116, 131, 247, 269
FalI	AAGNNNNNCTT	2 cut(s)	170, 202
FatI	CATG	4 cut(s)	114, 129, 245, 267
FokI	GGATG	1 cut(s)	228
FspBI	CTAG	1 cut(s)	23
FspI	TGCGCA	1 cut(s)	119
GlaI	GCGC	1 cut(s)	119
HhaI	GCGC	1 cut(s)	120
Hin1II	CATG	4 cut(s)	118, 133, 249, 271
Hin6I	GCGC	1 cut(s)	118
HinP1I	GCGC	1 cut(s)	118
HinfI	GANTC	4 cut(s)	16, 52, 150, 258
HphI	GGTGA	1 cut(s)	187
Hpy188I	TCNGA	1 cut(s)	12
HpyAV	CCTTC	1 cut(s)	216
HpyCH4V	TGCA	2 cut(s)	39, 65
HpyF10VI	GCNNNNNNNGC	2 cut(s)	115, 191
HpyF3I	CTNAG	1 cut(s)	285
Hsp92II	CATG	4 cut(s)	118, 133, 249, 271
HspAI	GCGC	1 cut(s)	118
Kzo9I	GATC	1 cut(s)	122
LpnPI	CCDG	6 cut(s)	91, 98, 128, 220, 230, 247
LweI	GCATC	1 cut(s)	271
MaeI	CTAG	1 cut(s)	23
MalI	GATC	1 cut(s)	124
MboI	GATC	1 cut(s)	122
MboII	GAAGA	3 cut(s)	25, 35, 190
MhlI	GDGCHC	1 cut(s)	8
MlyI	GAGTC	1 cut(s)	252
MnlI	CCTC	2 cut(s)	157, 216
MspR9I	CCNGG	1 cut(s)	235
MvaI	CCWGG	1 cut(s)	235
MwoI	GCNNNNNNNGC	2 cut(s)	115, 191
NcoI	CCATGG	1 cut(s)	245
NdeII	GATC	1 cut(s)	122
NlaIII	CATG	4 cut(s)	118, 133, 249, 271
NlaIV	GGNNCC	1 cut(s)	239
NsbI	TGCGCA	1 cut(s)	119
NspI	RCATGY	1 cut(s)	118
NspV	TTCGAA	1 cut(s)	148
PfeI	GAWTC	3 cut(s)	16, 52, 150
PleI	GAGTC	1 cut(s)	252
PpsI	GAGTC	1 cut(s)	252
Psp6I	CCWGG	1 cut(s)	233
PspGI	CCWGG	1 cut(s)	233
PspN4I	GGNNCC	1 cut(s)	239
PstI	CTGCAG	1 cut(s)	41
Sau3AI	GATC	1 cut(s)	122
SchI	GAGTC	1 cut(s)	252
ScrFI	CCNGG	1 cut(s)	235
SduI	GDGCHC	1 cut(s)	8
SetI	ASST	3 cut(s)	227, 239, 279
SfaNI	GCATC	1 cut(s)	271
SfcI	CTRYAG	1 cut(s)	37
SfuI	TTCGAA	1 cut(s)	148
SspMI	CTAG	1 cut(s)	23
StyD4I	CCNGG	1 cut(s)	233
StyI	CCWWGG	2 cut(s)	245, 273
TaqI	TCGA	2 cut(s)	148, 279
TfiI	GAWTC	3 cut(s)	16, 52, 150
TscAI	CASTG	2 cut(s)	41, 160
TspRI	CASTG	2 cut(s)	41, 160
XceI	RCATGY	1 cut(s)	118
XspI	CTAG	1 cut(s)	23

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.