Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0000899

Physical Location & Seq

Genomic Coordinates Reverse (-)

11954409 .. 11955396

Gene Structure 988 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G086600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGATATTCTTCAAATCAATCCCTCTTTGTTTCTTGGTCTTCTGTTTTGTCCACCTTTCAGCCATTGGTGCTTCCCCACTTAAGCATTTTTGTTTCAGCCCAGAAAACTACACTGCTGAGAGTTCATACGGTGCCAACTTGAATTTGTTGTTCAATCTTTTATACACAAAAGTTCCTCCTTCTGGCTTTGGCCTTGGTTCAACTGGCCATGCCCAAAACCAAGTGAATGGCCTGGCCCTTTGCCGCGGCGATGTCTCGAGACAAAACTGCAATACTTGTGTGATTGGTGCAAGCAAAGAGCTTCTTGAGCGTTGCCCTTATAGTAAAGGAGCCATAATTTGGTATGATCATTGCCTCTTAAAGTACTCAGACGTGAATTTCTTTGGGCAAATTGATAACAAAAACAAGTTCTCTATGACAAACGTCCAAGCGGTAGAGAATAATCCCACACTATTCAATGAGAAAGTACATGAATTGTTAAGTGGGTTATCCAATGAAGCCTCCGATGCTAATCCAAAGTTTTATGCTACCGGCGAGGTACAACTCGATACATTCACAACGTTATATGGTATTGCTCAATGCACAAGGGACCTCTCTAACGTTAATTGTAAGAAATGTCTTGATGTTGCAATAAGTGAACTGCCAAACTGTTGTGATGCAAAACGAGGTGGGCGTGTTGTAGGTGGGAGTTGCAATGTTGGATTTGAACTTTACCCCATTGTTGGTACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0030312 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071944 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1204 Stress-antifung

Protein Analysis

244

Amino Acids

26.58

Weight (kDa)

6.5

Isoelectric Point (pI)

21.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000899)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22060
fragaria_vesca	FvH4_2g10161
malus_domestica	MD05G1056000.v1.1 MD05G1056300.v1.1 MD10G1064400.v1.1
prunus_persica	Prupe.3G109800_v2.0.a1 Prupe.3G110100_v2.0.a1 Prupe.3G110200_v2.0.a1 Prupe.3G110300_v2.0.a1 Prupe.8G086600_v2.0.a1
pyrus_communis	pycom05g04770 pycom05g04780
rosa_chinensis	RchiOBHm_Chr1g0328011 RchiOBHm_Chr1g0328031 RchiOBHm_Chr2g0158681 RchiOBHm_Chr2g0160231 RchiOBHm_Chr2g0160251
rosa_laevigata	RLG00000014015 RLG00000021106 RLG00000021206 RLG00000021207 RLG00000029943 RLG00000029944 RLG00000029946 RLG00000029948
rosa_multiflora	Rmu_co8269469.1_g000001 Rmu_co8408147.1_g000001 Rmu_sc0000403.1_g000003 Rmu_sc0008269.1_g000008 Rmu_sc0020806.1_g000002
rosa_roxburghii	Rroxscaffold_2G00091070 Rroxscaffold_2G00091110 Rroxscaffold_4G00321960 Rroxscaffold_4G00321970 Rroxscaffold_4G00321980 Rroxscaffold_4G00322000 Rroxscaffold_4G00322030 Rroxscaffold_7G00200860 Rroxscaffold_7G00200940
rosa_rugosa	Rorug01G0073200 Rorug01G0073200 Rorug01G0073300 Rorug02G0471400 Rorug02G0472000 Rorug02G0482400 Rorug02G0482400
rosa_samantha	Rh1BG071900 Rh1BG072100 Rh2AG537200 Rh2AG547800 Rh2BG550400 Rh2BG561200 Rh2BG561400 Rh2CG520900 Rh2CG531800 Rh2CG532100 Rh6AG153200 Rh6CG149000
rosa_wichuraiana	Rw0G019500 Rw1G006970 Rw1G006980 Rw1G006990 Rw2G044480 Rw2G045320 Rw6G013180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	131
AccB7I	CCANNNNNTGG	1 cut(s)	339
AccII	CGCG	1 cut(s)	246
AciI	CCGC	3 cut(s)	244, 246, 431
AclI	AACGTT	2 cut(s)	560, 600
AcoI	YGGCCR	1 cut(s)	205
AcsI	RAATTY	2 cut(s)	142, 376
AfaI	GTAC	4 cut(s)	365, 468, 540, 727
AfiI	CCNNNNNNNGG	3 cut(s)	182, 339, 722
AflII	CTTAAG	1 cut(s)	80
AgsI	TTSAA	6 cut(s)	13, 142, 154, 201, 457, 707
AjiI	CACGTC	1 cut(s)	373
AjnI	CCWGG	1 cut(s)	231
AluBI	AGCT	1 cut(s)	301
AluI	AGCT	1 cut(s)	301
Alw26I	GTCTC	2 cut(s)	253, 259
Ama87I	CYCGRG	1 cut(s)	256
AoxI	GGCC	4 cut(s)	190, 205, 229, 234
ApoI	RAATTY	2 cut(s)	142, 376
AspS9I	GGNCC	2 cut(s)	235, 589
AvaI	CYCGRG	1 cut(s)	256
AvaII	GGWCC	1 cut(s)	589
BalI	TGGCCA	1 cut(s)	207
BanI	GGYRCC	1 cut(s)	131
BbsI	GAAGAC	1 cut(s)	31
BciT130I	CCWGG	1 cut(s)	233
BclI	TGATCA	1 cut(s)	346
BcoDI	GTCTC	2 cut(s)	253, 259
BfrI	CTTAAG	1 cut(s)	80
BisI	GCNGC	2 cut(s)	244, 247
BlsI	GCNGC	2 cut(s)	245, 248
BmcAI	AGTACT	1 cut(s)	365
Bme1390I	CCNGG	1 cut(s)	233
Bme18I	GGWCC	1 cut(s)	589
BmeT110I	CYCGRG	1 cut(s)	256
BmgBI	CACGTC	1 cut(s)	373
BmgT120I	GGNCC	2 cut(s)	235, 589
BmiI	GGNNCC	3 cut(s)	133, 331, 590
BmrFI	CCNGG	1 cut(s)	233
BmsI	GCATC	2 cut(s)	496, 646
BoxI	GACNNNNGTC	1 cut(s)	422
BpiI	GAAGAC	1 cut(s)	31
BpuEI	CTTGAG	1 cut(s)	326
BsaBI	GATNNNNATC	1 cut(s)	510
BsaJI	CCNNGG	2 cut(s)	193, 244
Bsc4I	CCNNNNNNNGG	3 cut(s)	182, 339, 722
Bse118I	RCCGGY	1 cut(s)	530
Bse1I	ACTGG	1 cut(s)	208
Bse3DI	GCAATG	2 cut(s)	349, 700
Bse8I	GATNNNNATC	1 cut(s)	510
BseBI	CCWGG	1 cut(s)	233
BseDI	CCNNGG	2 cut(s)	193, 244
BseJI	GATNNNNATC	1 cut(s)	510
BseLI	CCNNNNNNNGG	3 cut(s)	182, 339, 722
BseMI	GCAATG	2 cut(s)	349, 700
BseMII	CTCAG	2 cut(s)	108, 381
BseNI	ACTGG	1 cut(s)	208
Bsh1236I	CGCG	1 cut(s)	246
BshFI	GGCC	4 cut(s)	192, 207, 231, 236
BshNI	GGYRCC	1 cut(s)	131
BsiHKCI	CYCGRG	1 cut(s)	256
BsiSI	CCGG	1 cut(s)	531
BslFI	GGGAC	1 cut(s)	602
BslI	CCNNNNNNNGG	3 cut(s)	182, 339, 722
BsmAI	GTCTC	2 cut(s)	253, 259
BsmFI	GGGAC	1 cut(s)	602
BsnI	GGCC	4 cut(s)	192, 207, 231, 236
BsoBI	CYCGRG	1 cut(s)	256
Bsp143I	GATC	1 cut(s)	346
BspACI	CCGC	3 cut(s)	244, 246, 431
BspANI	GGCC	4 cut(s)	192, 207, 231, 236
BspCNI	CTCAG	2 cut(s)	109, 380
BspFNI	CGCG	1 cut(s)	246
BspLI	GGNNCC	3 cut(s)	133, 331, 590
BspT107I	GGYRCC	1 cut(s)	131
BspTI	CTTAAG	1 cut(s)	80
BsrDI	GCAATG	2 cut(s)	349, 700
BsrFI	RCCGGY	1 cut(s)	530
BsrI	ACTGG	1 cut(s)	208
BssAI	RCCGGY	1 cut(s)	530
BssECI	CCNNGG	2 cut(s)	193, 244
BssMI	GATC	1 cut(s)	346
BssT1I	CCWWGG	1 cut(s)	193
Bst2UI	CCWGG	1 cut(s)	233
Bst4CI	ACNGT	2 cut(s)	131, 650
BstAFI	CTTAAG	1 cut(s)	80
BstC8I	GCNNGC	1 cut(s)	292
BstDEI	CTNAG	3 cut(s)	117, 367, 729
BstDSI	CCRYGG	1 cut(s)	244
BstFNI	CGCG	1 cut(s)	246
BstKTI	GATC	1 cut(s)	349
BstMAI	GTCTC	2 cut(s)	253, 259
BstMBI	GATC	1 cut(s)	346
BstMWI	GCNNNNNNNGC	3 cut(s)	68, 307, 506
BstNI	CCWGG	1 cut(s)	233
BstPAI	GACNNNNGTC	1 cut(s)	422
BstSCI	CCNGG	1 cut(s)	231
BstUI	CGCG	1 cut(s)	246
BstV2I	GAAGAC	1 cut(s)	31
BstXI	CCANNNNNNTGG	1 cut(s)	227
BsuRI	GGCC	4 cut(s)	192, 207, 231, 236
BtgI	CCRYGG	1 cut(s)	244
BtgZI	GCGATG	1 cut(s)	264
BtrI	CACGTC	1 cut(s)	373
BtsI	GCAGTG	1 cut(s)	111
BtsIMutI	CAGTG	1 cut(s)	111
Cac8I	GCNNGC	1 cut(s)	292
Cfr10I	RCCGGY	1 cut(s)	530
Cfr13I	GGNCC	2 cut(s)	235, 589
Cfr42I	CCGCGG	1 cut(s)	247
Csp6I	GTAC	4 cut(s)	364, 467, 539, 726
CviAII	CATG	2 cut(s)	209, 470
CviQI	GTAC	4 cut(s)	364, 467, 539, 726
DdeI	CTNAG	3 cut(s)	117, 367, 729
DpnI	GATC	1 cut(s)	348
DpnII	GATC	1 cut(s)	346
EaeI	YGGCCR	1 cut(s)	205
Eco130I	CCWWGG	1 cut(s)	193
Eco47I	GGWCC	1 cut(s)	589
Eco88I	CYCGRG	1 cut(s)	256
EcoO109I	RGGNCCY	1 cut(s)	589
EcoRII	CCWGG	1 cut(s)	231
EcoT14I	CCWWGG	1 cut(s)	193
ErhI	CCWWGG	1 cut(s)	193
FaeI	CATG	2 cut(s)	212, 473
FalI	AAGNNNNNCTT	2 cut(s)	288, 320
FaqI	GGGAC	1 cut(s)	602
FatI	CATG	2 cut(s)	208, 469
FbaI	TGATCA	1 cut(s)	346
Fnu4HI	GCNGC	2 cut(s)	244, 247
Fsp4HI	GCNGC	2 cut(s)	244, 247
GluI	GCNGC	2 cut(s)	244, 247
HaeIII	GGCC	4 cut(s)	192, 207, 231, 236
HapII	CCGG	1 cut(s)	531
Hin1II	CATG	2 cut(s)	212, 473
HpaII	CCGG	1 cut(s)	531
Hpy166II	GTNNAC	2 cut(s)	52, 638
Hpy188I	TCNGA	2 cut(s)	370, 505
Hpy188III	TCNNGA	4 cut(s)	256, 258, 305, 620
Hpy8I	GTNNAC	2 cut(s)	52, 638
HpyAV	CCTTC	1 cut(s)	189
HpyCH4III	ACNGT	2 cut(s)	131, 650
HpyCH4IV	ACGT	4 cut(s)	372, 423, 560, 600
HpyCH4V	TGCA	6 cut(s)	270, 290, 582, 629, 659, 693
HpyF10VI	GCNNNNNNNGC	3 cut(s)	68, 307, 506
HpyF3I	CTNAG	3 cut(s)	117, 367, 729
HpySE526I	ACGT	4 cut(s)	372, 423, 560, 600
Hsp92II	CATG	2 cut(s)	212, 473
Ksp22I	TGATCA	1 cut(s)	346
KspI	CCGCGG	1 cut(s)	247
Kzo9I	GATC	1 cut(s)	346
LmnI	GCTCC	1 cut(s)	329
LpnPI	CCDG	6 cut(s)	114, 168, 189, 218, 245, 544
LweI	GCATC	2 cut(s)	496, 646
MaeII	ACGT	4 cut(s)	372, 423, 560, 600
MalI	GATC	1 cut(s)	348
MboI	GATC	1 cut(s)	346
MboII	GAAGA	1 cut(s)	31
MlsI	TGGCCA	1 cut(s)	207
MluCI	AATT	6 cut(s)	142, 336, 376, 390, 473, 604
MluNI	TGGCCA	1 cut(s)	207
MmeI	TCCRAC	1 cut(s)	679
MnlI	CCTC	7 cut(s)	33, 186, 365, 511, 529, 602, 659
Mox20I	TGGCCA	1 cut(s)	207
MscI	TGGCCA	1 cut(s)	207
MseI	TTAA	4 cut(s)	81, 359, 479, 603
Msp20I	TGGCCA	1 cut(s)	207
MspA1I	CMGCKG	1 cut(s)	246
MspCI	CTTAAG	1 cut(s)	80
MspI	CCGG	1 cut(s)	531
MspR9I	CCNGG	1 cut(s)	233
MvaI	CCWGG	1 cut(s)	233
MvnI	CGCG	1 cut(s)	246
MwoI	GCNNNNNNNGC	3 cut(s)	68, 307, 506
NdeII	GATC	1 cut(s)	346
NlaIII	CATG	2 cut(s)	212, 473
NlaIV	GGNNCC	3 cut(s)	133, 331, 590
PaeR7I	CTCGAG	1 cut(s)	256
PcsI	WCGNNNNNNNCGW	1 cut(s)	670
PflMI	CCANNNNNTGG	1 cut(s)	339
PkrI	GCNGC	2 cut(s)	245, 248
PpuMI	RGGWCCY	1 cut(s)	589
PshAI	GACNNNNGTC	1 cut(s)	422
Psp1406I	AACGTT	2 cut(s)	560, 600
Psp5II	RGGWCCY	1 cut(s)	589
Psp6I	CCWGG	1 cut(s)	231
PspGI	CCWGG	1 cut(s)	231
PspN4I	GGNNCC	3 cut(s)	133, 331, 590
PspPI	GGNCC	2 cut(s)	235, 589
PspPPI	RGGWCCY	1 cut(s)	589
RsaI	GTAC	4 cut(s)	365, 468, 540, 727
RsaNI	GTAC	4 cut(s)	364, 467, 539, 726
SacII	CCGCGG	1 cut(s)	247
SaqAI	TTAA	4 cut(s)	81, 359, 479, 603
SatI	GCNGC	2 cut(s)	244, 247
Sau3AI	GATC	1 cut(s)	346
Sau96I	GGNCC	2 cut(s)	235, 589
ScaI	AGTACT	1 cut(s)	365
ScrFI	CCNGG	1 cut(s)	233
SfaNI	GCATC	2 cut(s)	496, 646
Sfr274I	CTCGAG	1 cut(s)	256
Sfr303I	CCGCGG	1 cut(s)	247
SgrBI	CCGCGG	1 cut(s)	247
SinI	GGWCC	1 cut(s)	589
SlaI	CTCGAG	1 cut(s)	256
SmlI	CTYRAG	3 cut(s)	80, 256, 305
SmoI	CTYRAG	3 cut(s)	80, 256, 305
Sse9I	AATT	6 cut(s)	142, 336, 376, 390, 473, 604
SsiI	CCGC	3 cut(s)	244, 246, 431
StyD4I	CCNGG	1 cut(s)	231
StyI	CCWWGG	1 cut(s)	193
TaaI	ACNGT	2 cut(s)	131, 650
TaiI	ACGT	4 cut(s)	375, 426, 563, 603
TaqI	TCGA	2 cut(s)	257, 546
TasI	AATT	6 cut(s)	142, 336, 376, 390, 473, 604
TatI	WGTACW	2 cut(s)	363, 466
TauI	GCSGC	2 cut(s)	246, 249
Tru1I	TTAA	4 cut(s)	81, 359, 479, 603
Tru9I	TTAA	4 cut(s)	81, 359, 479, 603
TscAI	CASTG	1 cut(s)	118
TspDTI	ATGAA	3 cut(s)	114, 486, 510
TspRI	CASTG	1 cut(s)	118
Van91I	CCANNNNNTGG	1 cut(s)	339
Vha464I	CTTAAG	1 cut(s)	80
VpaK11BI	GGWCC	1 cut(s)	589
XapI	RAATTY	2 cut(s)	142, 376
XhoI	CTCGAG	1 cut(s)	256
ZrmI	AGTACT	1 cut(s)	365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.