Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0000899

Physical Location & Seq

Genomic Coordinates Forward (+)

9034888 .. 9035780

Gene Structure 893 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G110300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGTTCTTCTCCAAATCAATCCCTCTCTTTTTCTTACTCTTCTGTCTTTTACACCATGCTGCGCTTAGTGCTTCACCACTTGTCCACTTTTGTTTCAGCAAAGAAAACTACACTGCCAATAGCCCATATGGTGCTAACTTGATTCAGCTGTTCAATCTTCTGTATACAAAAGTTCCTCCTACTGGATTTGGCCTTGGATCAACTGGTGAAGGCCAAAACCAAGCGAATGGGCTAGCCCTATGTCGTGGGGATGTCTCAAGCCAAGATTGCAAGACTTGTGTCGTTGAAGCAAGCAAAAAGCTTGGTGAGCGCTGCCCTAGTAGAAAAGGAGCCATAATATGGTACGACAACTGCCTGTTCAAGTACTCAAATGTGAATTTTGCTGGGAAAATTGATAACAACAACAGGTTTTATATGTGGAATGTCCAAGAAGTAGATGATCCCACGCCGTTCAATGAGAAAGTTAAGGAATTGTTAAGCGGGTTATCTACTAAAGCTTCTTCTAATCCAAAGTTTTATGCTACTGGTGAGCTAGAGCTCAGCTCATCGGAAACACTATATGGTTTGACTCAATGCACAAGGGACCTCTCTAGTTCCGATTGTAAGAAGTGTCTTGATGATGCAATAAGCGAATTGCCAAATTGTTGTGATGCGAAACAAGGTGGGCGTGTTGTGGGTGGGAGTTGTAACTTTCGATATGAACTTTACCCCATTGTTGATCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0030312 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071944 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1204 Stress-antifung

Protein Analysis

242

Amino Acids

26.58

Weight (kDa)

6.3

Isoelectric Point (pI)

29.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000899)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22060
fragaria_vesca	FvH4_2g10161
malus_domestica	MD05G1056000.v1.1 MD05G1056300.v1.1 MD10G1064400.v1.1
prunus_persica	Prupe.3G109800_v2.0.a1 Prupe.3G110100_v2.0.a1 Prupe.3G110200_v2.0.a1 Prupe.3G110300_v2.0.a1 Prupe.8G086600_v2.0.a1
pyrus_communis	pycom05g04770 pycom05g04780
rosa_chinensis	RchiOBHm_Chr1g0328011 RchiOBHm_Chr1g0328031 RchiOBHm_Chr2g0158681 RchiOBHm_Chr2g0160231 RchiOBHm_Chr2g0160251
rosa_laevigata	RLG00000014015 RLG00000021106 RLG00000021206 RLG00000021207 RLG00000029943 RLG00000029944 RLG00000029946 RLG00000029948
rosa_multiflora	Rmu_co8269469.1_g000001 Rmu_co8408147.1_g000001 Rmu_sc0000403.1_g000003 Rmu_sc0008269.1_g000008 Rmu_sc0020806.1_g000002
rosa_roxburghii	Rroxscaffold_2G00091070 Rroxscaffold_2G00091110 Rroxscaffold_4G00321960 Rroxscaffold_4G00321970 Rroxscaffold_4G00321980 Rroxscaffold_4G00322000 Rroxscaffold_4G00322030 Rroxscaffold_7G00200860 Rroxscaffold_7G00200940
rosa_rugosa	Rorug01G0073200 Rorug01G0073200 Rorug01G0073300 Rorug02G0471400 Rorug02G0472000 Rorug02G0482400 Rorug02G0482400
rosa_samantha	Rh1BG071900 Rh1BG072100 Rh2AG537200 Rh2AG547800 Rh2BG550400 Rh2BG561200 Rh2BG561400 Rh2CG520900 Rh2CG531800 Rh2CG532100 Rh6AG153200 Rh6CG149000
rosa_wichuraiana	Rw0G019500 Rw1G006970 Rw1G006980 Rw1G006990 Rw2G044480 Rw2G045320 Rw6G013180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	339
AccI	GTMKAC	1 cut(s)	164
AciI	CCGC	1 cut(s)	480
AclWI	GGATC	3 cut(s)	205, 434, 713
AcsI	RAATTY	1 cut(s)	376
AfaI	GTAC	2 cut(s)	344, 365
AfeI	AGCGCT	1 cut(s)	311
AfiI	CCNNNNNNNGG	2 cut(s)	182, 339
AgsI	TTSAA	4 cut(s)	154, 287, 361, 454
AluBI	AGCT	6 cut(s)	148, 301, 497, 532, 538, 543
AluI	AGCT	6 cut(s)	148, 301, 497, 532, 538, 543
Alw21I	GWGCWC	1 cut(s)	540
Alw26I	GTCTC	1 cut(s)	259
AlwI	GGATC	3 cut(s)	205, 434, 713
Aor51HI	AGCGCT	1 cut(s)	311
AoxI	GGCC	2 cut(s)	190, 211
ApeKI	GCWGC	2 cut(s)	59, 312
ApoI	RAATTY	1 cut(s)	376
AspLEI	GCGC	2 cut(s)	64, 312
AspS9I	GGNCC	1 cut(s)	583
AsuHPI	GGTGA	4 cut(s)	66, 218, 317, 539
AsuNHI	GCTAGC	1 cut(s)	232
AvaII	GGWCC	1 cut(s)	583
BanII	GRGCYC	1 cut(s)	540
Bbv12I	GWGCWC	1 cut(s)	540
BbvI	GCAGC	2 cut(s)	46, 299
BceAI	ACGGC	1 cut(s)	433
BcoDI	GTCTC	1 cut(s)	259
BfaI	CTAG	4 cut(s)	233, 318, 533, 591
BfoI	RGCGCY	1 cut(s)	313
BisI	GCNGC	2 cut(s)	60, 313
BlpI	GCTNAGC	1 cut(s)	539
BlsI	GCNGC	2 cut(s)	61, 314
BmcAI	AGTACT	1 cut(s)	365
Bme18I	GGWCC	1 cut(s)	583
BmgT120I	GGNCC	1 cut(s)	583
BmiI	GGNNCC	2 cut(s)	331, 584
BmsI	GCATC	2 cut(s)	610, 640
BmtI	GCTAGC	1 cut(s)	236
BoxI	GACNNNNGTC	1 cut(s)	278
BplI	GAGNNNNNCTC	2 cut(s)	527, 559
Bpu1102I	GCTNAGC	1 cut(s)	539
BpuEI	CTTGAG	1 cut(s)	241
BsaJI	CCNNGG	1 cut(s)	193
Bsc4I	CCNNNNNNNGG	2 cut(s)	182, 339
Bse1I	ACTGG	3 cut(s)	187, 208, 529
BseDI	CCNNGG	1 cut(s)	193
BseGI	GGATG	1 cut(s)	256
BseLI	CCNNNNNNNGG	2 cut(s)	182, 339
BseMII	CTCAG	1 cut(s)	553
BseNI	ACTGG	3 cut(s)	187, 208, 529
BseXI	GCAGC	2 cut(s)	46, 299
BseYI	CCCAGC	1 cut(s)	383
BshFI	GGCC	2 cut(s)	192, 213
BsiHKAI	GWGCWC	1 cut(s)	540
BslFI	GGGAC	1 cut(s)	596
BslI	CCNNNNNNNGG	2 cut(s)	182, 339
BsmAI	GTCTC	1 cut(s)	259
BsmFI	GGGAC	1 cut(s)	596
BsnI	GGCC	2 cut(s)	192, 213
Bsp1286I	GDGCHC	1 cut(s)	540
Bsp143I	GATC	3 cut(s)	197, 439, 718
Bsp1720I	GCTNAGC	1 cut(s)	539
BspACI	CCGC	1 cut(s)	480
BspANI	GGCC	2 cut(s)	192, 213
BspCNI	CTCAG	1 cut(s)	552
BspLI	GGNNCC	2 cut(s)	331, 584
BspOI	GCTAGC	1 cut(s)	236
BspPI	GGATC	3 cut(s)	205, 434, 713
BsrI	ACTGG	3 cut(s)	187, 208, 529
BssECI	CCNNGG	1 cut(s)	193
BssMI	GATC	3 cut(s)	197, 439, 718
BssNAI	GTATAC	1 cut(s)	165
BssT1I	CCWWGG	1 cut(s)	193
Bst1107I	GTATAC	1 cut(s)	165
Bst6I	CTCTTC	1 cut(s)	44
BstC8I	GCNNGC	2 cut(s)	234, 292
BstDEI	CTNAG	2 cut(s)	65, 539
BstF5I	GGATG	1 cut(s)	256
BstH2I	RGCGCY	1 cut(s)	313
BstHHI	GCGC	2 cut(s)	64, 312
BstKTI	GATC	3 cut(s)	200, 442, 721
BstMAI	GTCTC	1 cut(s)	259
BstMBI	GATC	3 cut(s)	197, 439, 718
BstMWI	GCNNNNNNNGC	3 cut(s)	68, 267, 307
BstPAI	GACNNNNGTC	1 cut(s)	278
BstV1I	GCAGC	2 cut(s)	46, 299
BstXI	CCANNNNNNTGG	1 cut(s)	227
BstZ17I	GTATAC	1 cut(s)	165
BsuRI	GGCC	2 cut(s)	192, 213
BtsCI	GGATG	1 cut(s)	256
BtsI	GCAGTG	1 cut(s)	111
BtsIMutI	CAGTG	1 cut(s)	111
Cac8I	GCNNGC	2 cut(s)	234, 292
CfoI	GCGC	2 cut(s)	64, 312
Cfr13I	GGNCC	1 cut(s)	583
Csp6I	GTAC	2 cut(s)	343, 364
CviAII	CATG	1 cut(s)	56
CviQI	GTAC	2 cut(s)	343, 364
DdeI	CTNAG	2 cut(s)	65, 539
DpnI	GATC	3 cut(s)	199, 441, 720
DpnII	GATC	3 cut(s)	197, 439, 718
Eam1104I	CTCTTC	1 cut(s)	44
EarI	CTCTTC	1 cut(s)	44
Ecl136II	GAGCTC	1 cut(s)	538
Eco130I	CCWWGG	1 cut(s)	193
Eco24I	GRGCYC	1 cut(s)	540
Eco47I	GGWCC	1 cut(s)	583
Eco47III	AGCGCT	1 cut(s)	311
Eco53kI	GAGCTC	1 cut(s)	538
EcoICRI	GAGCTC	1 cut(s)	538
EcoO109I	RGGNCCY	1 cut(s)	583
EcoT14I	CCWWGG	1 cut(s)	193
EcoT38I	GRGCYC	1 cut(s)	540
ErhI	CCWWGG	1 cut(s)	193
FaeI	CATG	1 cut(s)	59
FaqI	GGGAC	1 cut(s)	596
FatI	CATG	1 cut(s)	55
FauI	CCCGC	1 cut(s)	473
FauNDI	CATATG	1 cut(s)	127
FblI	GTMKAC	1 cut(s)	164
Fnu4HI	GCNGC	2 cut(s)	60, 313
FokI	GGATG	1 cut(s)	263
FriOI	GRGCYC	1 cut(s)	540
Fsp4HI	GCNGC	2 cut(s)	60, 313
FspBI	CTAG	4 cut(s)	233, 318, 533, 591
GlaI	GCGC	2 cut(s)	63, 311
GluI	GCNGC	2 cut(s)	60, 313
GsaI	CCCAGC	1 cut(s)	387
HaeII	RGCGCY	1 cut(s)	313
HaeIII	GGCC	2 cut(s)	192, 213
HhaI	GCGC	2 cut(s)	64, 312
Hin1II	CATG	1 cut(s)	59
Hin6I	GCGC	2 cut(s)	62, 310
HinP1I	GCGC	2 cut(s)	62, 310
HindIII	AAGCTT	2 cut(s)	299, 495
HinfI	GANTC	2 cut(s)	142, 568
HphI	GGTGA	4 cut(s)	66, 218, 317, 539
Hpy166II	GTNNAC	2 cut(s)	85, 165
Hpy188I	TCNGA	2 cut(s)	550, 598
Hpy188III	TCNNGA	1 cut(s)	614
Hpy8I	GTNNAC	2 cut(s)	85, 165
HpyAV	CCTTC	1 cut(s)	203
HpyCH4V	TGCA	3 cut(s)	270, 576, 623
HpyF10VI	GCNNNNNNNGC	3 cut(s)	68, 267, 307
HpyF3I	CTNAG	2 cut(s)	65, 539
Hsp92II	CATG	1 cut(s)	59
HspAI	GCGC	2 cut(s)	62, 310
Kzo9I	GATC	3 cut(s)	197, 439, 718
LmnI	GCTCC	1 cut(s)	329
LpnPI	CCDG	6 cut(s)	168, 189, 368, 369, 391, 510
Lsp1109I	GCAGC	2 cut(s)	46, 299
LweI	GCATC	2 cut(s)	610, 640
MaeI	CTAG	4 cut(s)	233, 318, 533, 591
MaeIII	GTNAC	1 cut(s)	686
MalI	GATC	3 cut(s)	199, 441, 720
MboI	GATC	3 cut(s)	197, 439, 718
MboII	GAAGA	3 cut(s)	31, 149, 492
MhlI	GDGCHC	1 cut(s)	540
MluCI	AATT	5 cut(s)	376, 390, 470, 632, 640
MlyI	GAGTC	1 cut(s)	562
MnlI	CCTC	3 cut(s)	33, 186, 596
MseI	TTAA	3 cut(s)	465, 476, 724
MspA1I	CMGCKG	1 cut(s)	148
MwoI	GCNNNNNNNGC	3 cut(s)	68, 267, 307
NdeI	CATATG	1 cut(s)	127
NdeII	GATC	3 cut(s)	197, 439, 718
NheI	GCTAGC	1 cut(s)	232
NlaIII	CATG	1 cut(s)	59
NlaIV	GGNNCC	2 cut(s)	331, 584
PfeI	GAWTC	1 cut(s)	142
PflMI	CCANNNNNTGG	1 cut(s)	339
PkrI	GCNGC	2 cut(s)	61, 314
PleI	GAGTC	1 cut(s)	562
PpsI	GAGTC	1 cut(s)	562
PpuMI	RGGWCCY	1 cut(s)	583
PshAI	GACNNNNGTC	1 cut(s)	278
Psp124BI	GAGCTC	1 cut(s)	540
Psp5II	RGGWCCY	1 cut(s)	583
PspFI	CCCAGC	1 cut(s)	383
PspN4I	GGNNCC	2 cut(s)	331, 584
PspPI	GGNCC	1 cut(s)	583
PspPPI	RGGWCCY	1 cut(s)	583
PvuII	CAGCTG	1 cut(s)	148
RsaI	GTAC	2 cut(s)	344, 365
RsaNI	GTAC	2 cut(s)	343, 364
SacI	GAGCTC	1 cut(s)	540
SaqAI	TTAA	3 cut(s)	465, 476, 724
SatI	GCNGC	2 cut(s)	60, 313
Sau3AI	GATC	3 cut(s)	197, 439, 718
Sau96I	GGNCC	1 cut(s)	583
ScaI	AGTACT	1 cut(s)	365
SchI	GAGTC	1 cut(s)	562
SduI	GDGCHC	1 cut(s)	540
SetI	ASST	9 cut(s)	150, 303, 410, 499, 534, 540, 545, 588, 664
SfaNI	GCATC	2 cut(s)	610, 640
SinI	GGWCC	1 cut(s)	583
SmlI	CTYRAG	1 cut(s)	256
SmoI	CTYRAG	1 cut(s)	256
Sse9I	AATT	5 cut(s)	376, 390, 470, 632, 640
SsiI	CCGC	1 cut(s)	480
SspMI	CTAG	4 cut(s)	233, 318, 533, 591
SstI	GAGCTC	1 cut(s)	540
StyI	CCWWGG	1 cut(s)	193
TaqI	TCGA	1 cut(s)	694
TasI	AATT	5 cut(s)	376, 390, 470, 632, 640
TatI	WGTACW	1 cut(s)	363
TfiI	GAWTC	1 cut(s)	142
Tru1I	TTAA	3 cut(s)	465, 476, 724
Tru9I	TTAA	3 cut(s)	465, 476, 724
TscAI	CASTG	1 cut(s)	118
TseI	GCWGC	2 cut(s)	59, 312
TspDTI	ATGAA	1 cut(s)	714
TspRI	CASTG	1 cut(s)	118
Van91I	CCANNNNNTGG	1 cut(s)	339
VpaK11BI	GGWCC	1 cut(s)	583
XapI	RAATTY	1 cut(s)	376
XmiI	GTMKAC	1 cut(s)	164
XspI	CTAG	4 cut(s)	233, 318, 533, 591
ZrmI	AGTACT	1 cut(s)	365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.