Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0000899

Physical Location & Seq

Genomic Coordinates Forward (+)

14604772 .. 14607619

Gene Structure 2848 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G006990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGTTCTCCAAATCAATCCCTCTGTCTTTCTTGCTTTTCTGTCTTTTGCACCATGCAGCCTCTGGTGCTTCCCCACTTTATCATATCTGTTTCAGCGAGGCAAACTACCCTGGTAGGAGTCCATACCATGCTAACTTGGACACGATGCTCAATCATTTATCCACCAAAGTCCCTCCAACTGGATTCGGGGTTGCTTCAACTGGTCAAGGTCCGAACAAAGTAAACGGACTAGCGCTATGCCGAGGCGATATCTCAAAGCTTCGTGCACGCTGCCCTCATGAAAAAGGAGCCATAATATGGTACGACCATTGCATGCTGAAATACTCAAATGGCAACTTCTTTGGGCAAATTGATACCACAAACAAGTTCCATCTGTGGAACACCCAGACCGTAAGCAATCCCAGACTATTCAATAAGAATGTTAAGAAATTGTTGAGTGGGTTGTCTGATAAAGCTTCTTCTAACCGAAAGCTTTATAGTACTGGTGAGCTACAGCTCGATAAATCGAAAAAGTTGTATGGTTTAGTTCAGTGCACAAGGGACCTATCTCGCCTGGATTGTAAGAAGTGTCTTGATGTTGCAATGAGTGAACTACCGAAAGATTCTGATGCGAAACGAGGCGGGCGCGTAGCAAGTGGGAGTTGTAACTTTCGATATGAACTCTCCCGCTTTGTTTATCGTCGAGAAACTCTACTCGAAGGGGATTTTATGTACATGGCATATTGCAAAGAATGCTCAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0030312 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071944 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1204 Stress-antifung

Protein Analysis

247

Amino Acids

27.75

Weight (kDa)

9.38

Isoelectric Point (pI)

35.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stress-antifung	PF01657	30 - 110	1.5e-14	Salt stress response/antifungal
Stress-antifung	PF01657	130 - 221	4.1e-14	Salt stress response/antifungal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000899)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22060
fragaria_vesca	FvH4_2g10161
malus_domestica	MD05G1056000.v1.1 MD05G1056300.v1.1 MD10G1064400.v1.1
prunus_persica	Prupe.3G109800_v2.0.a1 Prupe.3G110100_v2.0.a1 Prupe.3G110200_v2.0.a1 Prupe.3G110300_v2.0.a1 Prupe.8G086600_v2.0.a1
pyrus_communis	pycom05g04770 pycom05g04780
rosa_chinensis	RchiOBHm_Chr1g0328011 RchiOBHm_Chr1g0328031 RchiOBHm_Chr2g0158681 RchiOBHm_Chr2g0160231 RchiOBHm_Chr2g0160251
rosa_laevigata	RLG00000014015 RLG00000021106 RLG00000021206 RLG00000021207 RLG00000029943 RLG00000029944 RLG00000029946 RLG00000029948
rosa_multiflora	Rmu_co8269469.1_g000001 Rmu_co8408147.1_g000001 Rmu_sc0000403.1_g000003 Rmu_sc0008269.1_g000008 Rmu_sc0020806.1_g000002
rosa_roxburghii	Rroxscaffold_2G00091070 Rroxscaffold_2G00091110 Rroxscaffold_4G00321960 Rroxscaffold_4G00321970 Rroxscaffold_4G00321980 Rroxscaffold_4G00322000 Rroxscaffold_4G00322030 Rroxscaffold_7G00200860 Rroxscaffold_7G00200940
rosa_rugosa	Rorug01G0073200 Rorug01G0073200 Rorug01G0073300 Rorug02G0471400 Rorug02G0472000 Rorug02G0482400 Rorug02G0482400
rosa_samantha	Rh1BG071900 Rh1BG072100 Rh2AG537200 Rh2AG547800 Rh2BG550400 Rh2BG561200 Rh2BG561400 Rh2CG520900 Rh2CG531800 Rh2CG532100 Rh6AG153200 Rh6CG149000
rosa_wichuraiana	Rw0G019500 Rw1G006970 Rw1G006980 Rw1G006990 Rw2G044480 Rw2G045320 Rw6G013180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	297
AccII	CGCG	1 cut(s)	627
AciI	CCGC	2 cut(s)	621, 667
AfaI	GTAC	3 cut(s)	302, 481, 713
AfeI	AGCGCT	1 cut(s)	234
AfiI	CCNNNNNNNGG	2 cut(s)	179, 297
AgsI	TTSAA	2 cut(s)	198, 412
AjnI	CCWGG	2 cut(s)	109, 552
AluBI	AGCT	5 cut(s)	259, 455, 472, 490, 496
AluI	AGCT	5 cut(s)	259, 455, 472, 490, 496
Alw21I	GWGCWC	2 cut(s)	268, 536
Alw44I	GTGCAC	2 cut(s)	264, 532
AlwNI	CAGNNNCTG	1 cut(s)	62
Aor51HI	AGCGCT	1 cut(s)	234
ApaLI	GTGCAC	2 cut(s)	264, 532
ApeKI	GCWGC	2 cut(s)	56, 270
AspLEI	GCGC	2 cut(s)	235, 627
AspS9I	GGNCC	2 cut(s)	209, 541
AsuHPI	GGTGA	1 cut(s)	497
AvaII	GGWCC	2 cut(s)	209, 541
BaeGI	GKGCMC	2 cut(s)	268, 536
Bbv12I	GWGCWC	2 cut(s)	268, 536
BbvI	GCAGC	2 cut(s)	68, 257
BccI	CCATC	1 cut(s)	378
BciT130I	CCWGG	2 cut(s)	111, 554
BfaI	CTAG	1 cut(s)	230
BfmI	CTRYAG	1 cut(s)	491
BfoI	RGCGCY	1 cut(s)	236
BisI	GCNGC	2 cut(s)	57, 271
BlsI	GCNGC	2 cut(s)	58, 272
BmcAI	AGTACT	1 cut(s)	481
Bme1390I	CCNGG	2 cut(s)	111, 554
Bme18I	GGWCC	2 cut(s)	209, 541
BmgT120I	GGNCC	2 cut(s)	209, 541
BmiI	GGNNCC	2 cut(s)	289, 542
BmrFI	CCNGG	2 cut(s)	111, 554
BmsI	GCATC	2 cut(s)	135, 598
BsaJI	CCNNGG	2 cut(s)	109, 241
Bsc4I	CCNNNNNNNGG	2 cut(s)	179, 297
Bse1I	ACTGG	3 cut(s)	184, 205, 487
Bse3DI	GCAATG	2 cut(s)	307, 588
BseBI	CCWGG	2 cut(s)	111, 554
BseDI	CCNNGG	2 cut(s)	109, 241
BseLI	CCNNNNNNNGG	2 cut(s)	179, 297
BseMI	GCAATG	2 cut(s)	307, 588
BseNI	ACTGG	3 cut(s)	184, 205, 487
BseSI	GKGCMC	2 cut(s)	268, 536
BseXI	GCAGC	2 cut(s)	68, 257
Bsh1236I	CGCG	1 cut(s)	627
BsiHKAI	GWGCWC	2 cut(s)	268, 536
BslFI	GGGAC	2 cut(s)	155, 554
BslI	CCNNNNNNNGG	2 cut(s)	179, 297
BsmFI	GGGAC	2 cut(s)	155, 554
BsmI	GAATGC	1 cut(s)	737
Bsp1286I	GDGCHC	2 cut(s)	268, 536
Bsp1407I	TGTACA	1 cut(s)	711
BspACI	CCGC	2 cut(s)	621, 667
BspFNI	CGCG	1 cut(s)	627
BspHI	TCATGA	1 cut(s)	277
BspLI	GGNNCC	2 cut(s)	289, 542
BsrDI	GCAATG	2 cut(s)	307, 588
BsrGI	TGTACA	1 cut(s)	711
BsrI	ACTGG	3 cut(s)	184, 205, 487
BssECI	CCNNGG	2 cut(s)	109, 241
Bst2UI	CCWGG	2 cut(s)	111, 554
Bst4CI	ACNGT	1 cut(s)	391
BstAPI	GCANNNNNTGC	1 cut(s)	732
BstAUI	TGTACA	1 cut(s)	711
BstC8I	GCNNGC	3 cut(s)	268, 314, 623
BstFNI	CGCG	1 cut(s)	627
BstH2I	RGCGCY	1 cut(s)	236
BstHHI	GCGC	2 cut(s)	235, 627
BstMWI	GCNNNNNNNGC	2 cut(s)	65, 732
BstNI	CCWGG	2 cut(s)	111, 554
BstNSI	RCATGY	1 cut(s)	316
BstSCI	CCNGG	2 cut(s)	109, 552
BstSFI	CTRYAG	1 cut(s)	491
BstSLI	GKGCMC	2 cut(s)	268, 536
BstUI	CGCG	1 cut(s)	627
BstV1I	GCAGC	2 cut(s)	68, 257
BtsIMutI	CAGTG	1 cut(s)	536
Cac8I	GCNNGC	3 cut(s)	268, 314, 623
CaiI	CAGNNNCTG	1 cut(s)	62
CciI	TCATGA	1 cut(s)	277
CfoI	GCGC	2 cut(s)	235, 627
Cfr13I	GGNCC	2 cut(s)	209, 541
Csp6I	GTAC	3 cut(s)	301, 480, 712
CviAII	CATG	5 cut(s)	53, 128, 278, 313, 715
CviJI	RGCY	7 cut(s)	59, 259, 290, 455, 472, 490, 496
CviKI_1	RGCY	7 cut(s)	59, 259, 290, 455, 472, 490, 496
CviQI	GTAC	3 cut(s)	301, 480, 712
Eco32I	GATATC	1 cut(s)	250
Eco47I	GGWCC	2 cut(s)	209, 541
Eco47III	AGCGCT	1 cut(s)	234
EcoO109I	RGGNCCY	1 cut(s)	541
EcoRII	CCWGG	2 cut(s)	109, 552
EcoRV	GATATC	1 cut(s)	250
FaeI	CATG	5 cut(s)	56, 131, 281, 316, 718
FaqI	GGGAC	2 cut(s)	155, 554
FatI	CATG	5 cut(s)	52, 127, 277, 312, 714
FauI	CCCGC	2 cut(s)	614, 674
Fnu4HI	GCNGC	2 cut(s)	57, 271
Fsp4HI	GCNGC	2 cut(s)	57, 271
FspBI	CTAG	1 cut(s)	230
GlaI	GCGC	2 cut(s)	234, 626
GluI	GCNGC	2 cut(s)	57, 271
HaeII	RGCGCY	1 cut(s)	236
HhaI	GCGC	2 cut(s)	235, 627
Hin1II	CATG	5 cut(s)	56, 131, 281, 316, 718
Hin6I	GCGC	2 cut(s)	233, 625
HinP1I	GCGC	2 cut(s)	233, 625
HindIII	AAGCTT	3 cut(s)	257, 453, 470
HinfI	GANTC	3 cut(s)	118, 183, 602
HphI	GGTGA	1 cut(s)	497
Hpy166II	GTNNAC	4 cut(s)	223, 266, 534, 590
Hpy188I	TCNGA	3 cut(s)	213, 448, 607
Hpy188III	TCNNGA	3 cut(s)	278, 572, 683
Hpy8I	GTNNAC	4 cut(s)	223, 266, 534, 590
Hpy99I	CGWCG	1 cut(s)	684
HpyAV	CCTTC	1 cut(s)	692
HpyCH4III	ACNGT	1 cut(s)	391
HpyCH4V	TGCA	7 cut(s)	49, 56, 266, 312, 534, 581, 726
HpyF10VI	GCNNNNNNNGC	2 cut(s)	65, 732
Hsp92II	CATG	5 cut(s)	56, 131, 281, 316, 718
HspAI	GCGC	2 cut(s)	233, 625
LmnI	GCTCC	1 cut(s)	287
Lsp1109I	GCAGC	2 cut(s)	68, 257
LweI	GCATC	2 cut(s)	135, 598
MaeI	CTAG	1 cut(s)	230
MaeIII	GTNAC	1 cut(s)	644
MboII	GAAGA	1 cut(s)	450
MhlI	GDGCHC	2 cut(s)	268, 536
MluCI	AATT	2 cut(s)	348, 428
MlyI	GAGTC	1 cut(s)	127
MmeI	TCCRAC	1 cut(s)	200
MnlI	CCTC	7 cut(s)	30, 70, 91, 183, 236, 285, 611
MseI	TTAA	1 cut(s)	423
MspR9I	CCNGG	2 cut(s)	111, 554
Mva1269I	GAATGC	1 cut(s)	737
MvaI	CCWGG	2 cut(s)	111, 554
MvnI	CGCG	1 cut(s)	627
MwoI	GCNNNNNNNGC	2 cut(s)	65, 732
NlaIII	CATG	5 cut(s)	56, 131, 281, 316, 718
NlaIV	GGNNCC	2 cut(s)	289, 542
NmeAIII	GCCGAG	1 cut(s)	266
NspI	RCATGY	1 cut(s)	316
PaeI	GCATGC	1 cut(s)	316
PagI	TCATGA	1 cut(s)	277
PctI	GAATGC	1 cut(s)	737
PfeI	GAWTC	2 cut(s)	183, 602
PflMI	CCANNNNNTGG	1 cut(s)	297
PkrI	GCNGC	2 cut(s)	58, 272
PleI	GAGTC	1 cut(s)	126
PpsI	GAGTC	1 cut(s)	126
PpuMI	RGGWCCY	1 cut(s)	541
Psp5II	RGGWCCY	1 cut(s)	541
Psp6I	CCWGG	2 cut(s)	109, 552
PspGI	CCWGG	2 cut(s)	109, 552
PspN4I	GGNNCC	2 cut(s)	289, 542
PspPI	GGNCC	2 cut(s)	209, 541
PspPPI	RGGWCCY	1 cut(s)	541
PstNI	CAGNNNCTG	1 cut(s)	62
RsaI	GTAC	3 cut(s)	302, 481, 713
RsaNI	GTAC	3 cut(s)	301, 480, 712
SaqAI	TTAA	1 cut(s)	423
SatI	GCNGC	2 cut(s)	57, 271
Sau96I	GGNCC	2 cut(s)	209, 541
ScaI	AGTACT	1 cut(s)	481
SchI	GAGTC	1 cut(s)	127
ScrFI	CCNGG	2 cut(s)	111, 554
SduI	GDGCHC	2 cut(s)	268, 536
SetI	ASST	7 cut(s)	211, 261, 457, 474, 492, 498, 546
SfaNI	GCATC	2 cut(s)	135, 598
SfcI	CTRYAG	1 cut(s)	491
SinI	GGWCC	2 cut(s)	209, 541
SphI	GCATGC	1 cut(s)	316
Sse9I	AATT	2 cut(s)	348, 428
SsiI	CCGC	2 cut(s)	621, 667
SspMI	CTAG	1 cut(s)	230
StyD4I	CCNGG	2 cut(s)	109, 552
TaaI	ACNGT	1 cut(s)	391
TaqI	TCGA	5 cut(s)	498, 506, 652, 682, 696
TasI	AATT	2 cut(s)	348, 428
TatI	WGTACW	2 cut(s)	479, 711
TfiI	GAWTC	2 cut(s)	183, 602
Tru1I	TTAA	1 cut(s)	423
Tru9I	TTAA	1 cut(s)	423
TscAI	CASTG	1 cut(s)	536
TseI	GCWGC	2 cut(s)	56, 270
TspDTI	ATGAA	2 cut(s)	294, 672
TspGWI	ACGGA	1 cut(s)	240
TspRI	CASTG	1 cut(s)	536
Van91I	CCANNNNNTGG	1 cut(s)	297
VneI	GTGCAC	2 cut(s)	264, 532
VpaK11BI	GGWCC	2 cut(s)	209, 541
XceI	RCATGY	1 cut(s)	316
XcmI	CCANNNNNNNNNTGG	1 cut(s)	59
XspI	CTAG	1 cut(s)	230
ZrmI	AGTACT	1 cut(s)	481

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.