Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0000899

Physical Location & Seq

Genomic Coordinates Reverse (-)

24236151 .. 24236884

Gene Structure 734 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G013180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGTTGTGCTTTAAAACAATCCCTCTAGGTTTCATAGTCTTCTGTCTTTTCATCCACTCATCCTTTGGTGCTTCCTCACTCAACCATTTCTGTTTCAGCCATGAAAACTACACTGCCAATAGCACATATGATGCGCACTTGACTCGGTTATTCATCCTTTTACAGACCAAAGTTCCTCCCACCGGATTTGCCCTTGCTTCGACTGGTCAAGCCCAAAAGAAAGCAAATGGCCTTGCACTTTGCCGAGGCGATGCCTCAAGTGAAGATTGCACTACTTGTGTGCAAAGGAGCCATATATGGTATGACCACTGCCTCTTAAAGTACTCAAATGTGGACTTCTTTGGGAAAATTGATAACAAAAACAAGTTCTATATGTGGAACGTTCAAGAAGTACAGAATCCCACACTTTTCAATGAGAGAGTTAAGGAATTGTTGAGTGGATTAGCTGTTGAAGCTTCTGATGGTAGTGCTAATCCGAAGTTTTATGCAACTGGTGAGCTGCAACTTGATACATTCACAACACTATATGGTTTAGCTACATGCACAAGGGACCTCTCATCCCCAGATTGTAAGAAGTGTCTTGATGGTGCAATAAGTGAATTGCCAAACTGCTGCAATGCAAAGCGAGGTGGGCGCGTTGTGGGTGGGAGTTGTAATGTTGGATTTGAACTTTACCCAATTGTTGGGACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0030312 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071944 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1204 Stress-antifung

Protein Analysis

230

Amino Acids

25.31

Weight (kDa)

6.96

Isoelectric Point (pI)

37.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stress-antifung	PF01657	31 - 110	3.2e-13	Salt stress response/antifungal
Stress-antifung	PF01657	132 - 224	1.2e-11	Salt stress response/antifungal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000899)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22060
fragaria_vesca	FvH4_2g10161
malus_domestica	MD05G1056000.v1.1 MD05G1056300.v1.1 MD10G1064400.v1.1
prunus_persica	Prupe.3G109800_v2.0.a1 Prupe.3G110100_v2.0.a1 Prupe.3G110200_v2.0.a1 Prupe.3G110300_v2.0.a1 Prupe.8G086600_v2.0.a1
pyrus_communis	pycom05g04770 pycom05g04780
rosa_chinensis	RchiOBHm_Chr1g0328011 RchiOBHm_Chr1g0328031 RchiOBHm_Chr2g0158681 RchiOBHm_Chr2g0160231 RchiOBHm_Chr2g0160251
rosa_laevigata	RLG00000014015 RLG00000021106 RLG00000021206 RLG00000021207 RLG00000029943 RLG00000029944 RLG00000029946 RLG00000029948
rosa_multiflora	Rmu_co8269469.1_g000001 Rmu_co8408147.1_g000001 Rmu_sc0000403.1_g000003 Rmu_sc0008269.1_g000008 Rmu_sc0020806.1_g000002
rosa_roxburghii	Rroxscaffold_2G00091070 Rroxscaffold_2G00091110 Rroxscaffold_4G00321960 Rroxscaffold_4G00321970 Rroxscaffold_4G00321980 Rroxscaffold_4G00322000 Rroxscaffold_4G00322030 Rroxscaffold_7G00200860 Rroxscaffold_7G00200940
rosa_rugosa	Rorug01G0073200 Rorug01G0073200 Rorug01G0073300 Rorug02G0471400 Rorug02G0472000 Rorug02G0482400 Rorug02G0482400
rosa_samantha	Rh1BG071900 Rh1BG072100 Rh2AG537200 Rh2AG547800 Rh2BG550400 Rh2BG561200 Rh2BG561400 Rh2CG520900 Rh2CG531800 Rh2CG532100 Rh6AG153200 Rh6CG149000
rosa_wichuraiana	Rw0G019500 Rw1G006970 Rw1G006980 Rw1G006990 Rw2G044480 Rw2G045320 Rw6G013180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	135
AccB7I	CCANNNNNTGG	1 cut(s)	683
AccII	CGCG	1 cut(s)	636
AclI	AACGTT	1 cut(s)	381
AfaI	GTAC	2 cut(s)	323, 393
AfiI	CCNNNNNNNGG	2 cut(s)	182, 683
AgsI	TTSAA	4 cut(s)	386, 412, 452, 668
AluBI	AGCT	4 cut(s)	446, 455, 499, 536
AluI	AGCT	4 cut(s)	446, 455, 499, 536
AoxI	GGCC	1 cut(s)	229
ApeKI	GCWGC	2 cut(s)	499, 612
AspLEI	GCGC	2 cut(s)	136, 636
AspS9I	GGNCC	1 cut(s)	550
AsuHPI	GGTGA	1 cut(s)	506
AvaII	GGWCC	1 cut(s)	550
BbsI	GAAGAC	1 cut(s)	31
BbvI	GCAGC	2 cut(s)	486, 599
BccI	CCATC	2 cut(s)	455, 578
BcgI	CGANNNNNNTGC	2 cut(s)	125, 159
BfaI	CTAG	1 cut(s)	26
BisI	GCNGC	2 cut(s)	500, 613
BlsI	GCNGC	2 cut(s)	501, 614
BmcAI	AGTACT	1 cut(s)	323
Bme18I	GGWCC	1 cut(s)	550
BmgT120I	GGNCC	1 cut(s)	550
BmiI	GGNNCC	2 cut(s)	290, 551
BmsI	GCATC	2 cut(s)	121, 241
BpiI	GAAGAC	1 cut(s)	31
BpuEI	CTTGAG	1 cut(s)	241
BsaJI	CCNNGG	1 cut(s)	244
BsaWI	WCCGGW	1 cut(s)	182
Bsc4I	CCNNNNNNNGG	2 cut(s)	182, 683
Bse1I	ACTGG	2 cut(s)	208, 496
Bse3DI	GCAATG	1 cut(s)	622
BseDI	CCNNGG	1 cut(s)	244
BseGI	GGATG	4 cut(s)	51, 59, 153, 557
BseLI	CCNNNNNNNGG	2 cut(s)	182, 683
BseMI	GCAATG	1 cut(s)	622
BseNI	ACTGG	2 cut(s)	208, 496
BseXI	GCAGC	2 cut(s)	486, 599
Bsh1236I	CGCG	1 cut(s)	636
BshFI	GGCC	1 cut(s)	231
BsiSI	CCGG	1 cut(s)	183
BslFI	GGGAC	1 cut(s)	563
BslI	CCNNNNNNNGG	2 cut(s)	182, 683
BsmFI	GGGAC	1 cut(s)	563
BsnI	GGCC	1 cut(s)	231
BspANI	GGCC	1 cut(s)	231
BspFNI	CGCG	1 cut(s)	636
BspLI	GGNNCC	2 cut(s)	290, 551
BsrDI	GCAATG	1 cut(s)	622
BsrI	ACTGG	2 cut(s)	208, 496
BssECI	CCNNGG	1 cut(s)	244
BstF5I	GGATG	4 cut(s)	51, 59, 153, 557
BstFNI	CGCG	1 cut(s)	636
BstHHI	GCGC	2 cut(s)	136, 636
BstMWI	GCNNNNNNNGC	2 cut(s)	452, 631
BstNSI	RCATGY	1 cut(s)	543
BstUI	CGCG	1 cut(s)	636
BstV1I	GCAGC	2 cut(s)	486, 599
BstV2I	GAAGAC	1 cut(s)	31
BsuRI	GGCC	1 cut(s)	231
BtgZI	GCGATG	1 cut(s)	264
BtsCI	GGATG	4 cut(s)	51, 59, 153, 557
BtsI	GCAGTG	2 cut(s)	111, 307
BtsIMutI	CAGTG	2 cut(s)	111, 307
CfoI	GCGC	2 cut(s)	136, 636
Cfr13I	GGNCC	1 cut(s)	550
Csp6I	GTAC	2 cut(s)	322, 392
CspCI	CAANNNNNGTGG	2 cut(s)	169, 204
CviAII	CATG	2 cut(s)	101, 540
CviJI	RGCY	8 cut(s)	99, 212, 231, 291, 446, 455, 499, 536
CviKI_1	RGCY	8 cut(s)	99, 212, 231, 291, 446, 455, 499, 536
CviQI	GTAC	2 cut(s)	322, 392
DraI	TTTAAA	1 cut(s)	13
Eco47I	GGWCC	1 cut(s)	550
EcoO109I	RGGNCCY	1 cut(s)	550
FaeI	CATG	2 cut(s)	104, 543
FaqI	GGGAC	1 cut(s)	563
FatI	CATG	2 cut(s)	100, 539
FauNDI	CATATG	1 cut(s)	127
Fnu4HI	GCNGC	2 cut(s)	500, 613
FokI	GGATG	4 cut(s)	38, 46, 140, 544
Fsp4HI	GCNGC	2 cut(s)	500, 613
FspAI	RTGCGCAY	1 cut(s)	135
FspBI	CTAG	1 cut(s)	26
FspI	TGCGCA	1 cut(s)	135
GlaI	GCGC	2 cut(s)	135, 635
GluI	GCNGC	2 cut(s)	500, 613
HaeIII	GGCC	1 cut(s)	231
HapII	CCGG	1 cut(s)	183
HhaI	GCGC	2 cut(s)	136, 636
Hin1II	CATG	2 cut(s)	104, 543
Hin6I	GCGC	2 cut(s)	134, 634
HinP1I	GCGC	2 cut(s)	134, 634
HindIII	AAGCTT	1 cut(s)	453
HinfI	GANTC	2 cut(s)	142, 397
HpaII	CCGG	1 cut(s)	183
HphI	GGTGA	1 cut(s)	506
Hpy166II	GTNNAC	1 cut(s)	334
Hpy188I	TCNGA	2 cut(s)	460, 477
Hpy188III	TCNNGA	2 cut(s)	386, 581
Hpy8I	GTNNAC	1 cut(s)	334
HpyCH4IV	ACGT	1 cut(s)	381
HpyCH4V	TGCA	9 cut(s)	236, 270, 283, 488, 502, 543, 590, 615, 620
HpyF10VI	GCNNNNNNNGC	2 cut(s)	452, 631
HpySE526I	ACGT	1 cut(s)	381
Hsp92II	CATG	2 cut(s)	104, 543
HspAI	GCGC	2 cut(s)	134, 634
LmnI	GCTCC	1 cut(s)	288
LpnPI	CCDG	4 cut(s)	189, 196, 477, 576
Lsp1109I	GCAGC	2 cut(s)	486, 599
LweI	GCATC	2 cut(s)	121, 241
MaeI	CTAG	1 cut(s)	26
MaeII	ACGT	1 cut(s)	381
MboII	GAAGA	2 cut(s)	31, 275
MfeI	CAATTG	1 cut(s)	678
MluCI	AATT	4 cut(s)	348, 428, 599, 678
MlyI	GAGTC	1 cut(s)	136
MmeI	TCCRAC	1 cut(s)	640
MnlI	CCTC	8 cut(s)	33, 85, 186, 239, 265, 323, 563, 620
MseI	TTAA	3 cut(s)	12, 317, 423
MspI	CCGG	1 cut(s)	183
MunI	CAATTG	1 cut(s)	678
MvnI	CGCG	1 cut(s)	636
MwoI	GCNNNNNNNGC	2 cut(s)	452, 631
NdeI	CATATG	1 cut(s)	127
NlaIII	CATG	2 cut(s)	104, 543
NlaIV	GGNNCC	2 cut(s)	290, 551
NmeAIII	GCCGAG	1 cut(s)	269
NsbI	TGCGCA	1 cut(s)	135
NspI	RCATGY	1 cut(s)	543
PfeI	GAWTC	1 cut(s)	397
PflMI	CCANNNNNTGG	1 cut(s)	683
PkrI	GCNGC	2 cut(s)	501, 614
PleI	GAGTC	1 cut(s)	136
PpsI	GAGTC	1 cut(s)	136
PpuMI	RGGWCCY	1 cut(s)	550
Psp1406I	AACGTT	1 cut(s)	381
Psp5II	RGGWCCY	1 cut(s)	550
PspN4I	GGNNCC	2 cut(s)	290, 551
PspPI	GGNCC	1 cut(s)	550
PspPPI	RGGWCCY	1 cut(s)	550
RsaI	GTAC	2 cut(s)	323, 393
RsaNI	GTAC	2 cut(s)	322, 392
SaqAI	TTAA	3 cut(s)	12, 317, 423
SatI	GCNGC	2 cut(s)	500, 613
Sau96I	GGNCC	1 cut(s)	550
ScaI	AGTACT	1 cut(s)	323
SchI	GAGTC	1 cut(s)	136
SetI	ASST	8 cut(s)	31, 384, 448, 457, 501, 538, 555, 631
SfaNI	GCATC	2 cut(s)	121, 241
SinI	GGWCC	1 cut(s)	550
SmlI	CTYRAG	1 cut(s)	256
SmoI	CTYRAG	1 cut(s)	256
Sse9I	AATT	4 cut(s)	348, 428, 599, 678
SspMI	CTAG	1 cut(s)	26
TaiI	ACGT	1 cut(s)	384
TaqI	TCGA	1 cut(s)	200
TasI	AATT	4 cut(s)	348, 428, 599, 678
TatI	WGTACW	2 cut(s)	321, 391
TfiI	GAWTC	1 cut(s)	397
Tru1I	TTAA	3 cut(s)	12, 317, 423
Tru9I	TTAA	3 cut(s)	12, 317, 423
TscAI	CASTG	2 cut(s)	118, 314
TseI	GCWGC	2 cut(s)	499, 612
TspDTI	ATGAA	4 cut(s)	22, 40, 117, 142
TspRI	CASTG	2 cut(s)	118, 314
Van91I	CCANNNNNTGG	1 cut(s)	683
VpaK11BI	GGWCC	1 cut(s)	550
XceI	RCATGY	1 cut(s)	543
XcmI	CCANNNNNNNNNTGG	1 cut(s)	62
XspI	CTAG	1 cut(s)	26
ZrmI	AGTACT	1 cut(s)	323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.