Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0000899

Physical Location & Seq

Genomic Coordinates Forward (+)

77731228 .. 77746766

Gene Structure 15539 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG547800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1425 bp

ATGAAAATTCTTGCATTATATGCTCCCTATTTTCTCCTACTTTCATGCATACTGCAAAATTACCATTCCATTAAAGCCCAAGTAATTGACAATTTTTTGAACTGTAACGGAACTGTCAATTATACTTCCGGGAGTGTCTATGAGCATAGGTTGAACCTCACCCTCAATTCCCTTGTTGCCAATGCCTCTCTCACAGGATTCTACATGACAAACGTCGGTGACACAAATGACACAGTTTATGGACTTGTTCAATGCAGGGGAGACCTCTCAAAAAATGATTGCAATACTTGTGCAAACACAGCAGCCACAAAGATCAGGCAACTATGTCTAAGCCAGAAGGAGGCTTCCATTGGCTATGTTAATTGTTCATTACAGTATTCCAACCGGCGTTTCTTCTCTACTTTCAACAGCTTTCCCAGATTAAATTTACACAATTACAAGACAGCACCTGATCCGGTTCTTTATAATCGTCAGTTGGGTAACTTGGTTAAGAATCTATCTTCAAAAGCTGCATCTGATCCTTCCAGATTTGCCATTGGGTTCACAAGTTACACAGATTTCATTGATATATATGAAAAAGTCAATAATTTCAACTCCGATCCGGTGATGCATCATGACCAGTACAATAGAATGTTCGAAACTTCTATATATAACACCGGCCGAACCCTACTCCATTATCATAATCCAATTACCAATATGGTTTGCTCCAAATCAATCCCTCTTGGTTTCTTACTGTTCTGTCTTTTCTACCATGTTGCCATTGGTGCTTCCCCGCTTTACCATTTCTGTTTCAGCAAACAAAACTACACTGCCAATAGCCCATACGAGGCCAACTTGAATCAGTTGCTCGATCTTCTATACACCAAAGTCCCTCCTACTGGATTTGGATCTGGTTCAACAGGTCAAGACCCAAACCAAGTGAACGGGCTGGCGCTCTGCCGTGGTGATGTTTCAAGCAACAATTGCAAGACTTGTGTCGTCAACGCAAGCAAGAAGCTCGGTGAGCGCTGCCCAGATAGAAAAGGAGCCATAATATGGTACGATAATTGCATGTTAAAGTACTCAGATGTGAATTTCGTTGGCCAAATTGATAACGCAAACAGGTTCTATATGTGGAATGTTCAAGAAGTAGATAACCCTACACCTTTCAATGAGAAGGTTAAAGAATTATTAAGTGGATTATCTACTACAGCTTCTTCTTCTAATCCAAAGCTCTATGCTACTGGCGAGGTGGAGCTCGATAAATCAACCAAGCTATATGGTTTAGTTCAATGCACGAGGGATCTATCTGAACCGGATTGCAAGAAGTGTCTTGATGGCGCAATAAGCGAACTGCCAAACTGTTGTGATGCAAAGCAAGGTGGGCGGGTTGTGGGCGGGAGTTGTAACTTCAGATACGAAATTTACCCTTTTGTTGATTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0030312 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071944 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1204 Stress-antifung

Protein Analysis

474

Amino Acids

52.95

Weight (kDa)

7.95

Isoelectric Point (pI)

26.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stress-antifung	PF01657	35 - 129	1.6e-20	Salt stress response/antifungal
Stress-antifung	PF01657	263 - 356	7.1e-26	Salt stress response/antifungal
Stress-antifung	PF01657	378 - 468	1.2e-14	Salt stress response/antifungal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000899)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22060
fragaria_vesca	FvH4_2g10161
malus_domestica	MD05G1056000.v1.1 MD05G1056300.v1.1 MD10G1064400.v1.1
prunus_persica	Prupe.3G109800_v2.0.a1 Prupe.3G110100_v2.0.a1 Prupe.3G110200_v2.0.a1 Prupe.3G110300_v2.0.a1 Prupe.8G086600_v2.0.a1
pyrus_communis	pycom05g04770 pycom05g04780
rosa_chinensis	RchiOBHm_Chr1g0328011 RchiOBHm_Chr1g0328031 RchiOBHm_Chr2g0158681 RchiOBHm_Chr2g0160231 RchiOBHm_Chr2g0160251
rosa_laevigata	RLG00000014015 RLG00000021106 RLG00000021206 RLG00000021207 RLG00000029943 RLG00000029944 RLG00000029946 RLG00000029948
rosa_multiflora	Rmu_co8269469.1_g000001 Rmu_co8408147.1_g000001 Rmu_sc0000403.1_g000003 Rmu_sc0008269.1_g000008 Rmu_sc0020806.1_g000002
rosa_roxburghii	Rroxscaffold_2G00091070 Rroxscaffold_2G00091110 Rroxscaffold_4G00321960 Rroxscaffold_4G00321970 Rroxscaffold_4G00321980 Rroxscaffold_4G00322000 Rroxscaffold_4G00322030 Rroxscaffold_7G00200860 Rroxscaffold_7G00200940
rosa_rugosa	Rorug01G0073200 Rorug01G0073200 Rorug01G0073300 Rorug02G0471400 Rorug02G0472000 Rorug02G0482400 Rorug02G0482400
rosa_samantha	Rh1BG071900 Rh1BG072100 Rh2AG537200 Rh2AG547800 Rh2BG550400 Rh2BG561200 Rh2BG561400 Rh2CG520900 Rh2CG531800 Rh2CG532100 Rh6AG153200 Rh6CG149000
rosa_wichuraiana	Rw0G019500 Rw1G006970 Rw1G006980 Rw1G006990 Rw2G044480 Rw2G045320 Rw6G013180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	465
AccB7I	CCANNNNNTGG	1 cut(s)	1035
AciI	CCGC	3 cut(s)	773, 1366, 1377
AclWI	GGATC	5 cut(s)	446, 512, 593, 895, 1290
AcoI	YGGCCR	2 cut(s)	658, 1081
AcsI	RAATTY	4 cut(s)	6, 424, 1072, 1401
AcuI	CTGAAG	1 cut(s)	1375
AfaI	GTAC	3 cut(s)	623, 1040, 1061
AfeI	AGCGCT	1 cut(s)	1007
AfiI	CCNNNNNNNGG	4 cut(s)	340, 826, 878, 1035
AjuI	GAANNNNNNNTTGG	2 cut(s)	374, 406
AluBI	AGCT	7 cut(s)	411, 509, 997, 1193, 1213, 1237, 1255
AluI	AGCT	7 cut(s)	411, 509, 997, 1193, 1213, 1237, 1255
Alw21I	GWGCWC	1 cut(s)	1239
Alw26I	GTCTC	1 cut(s)	255
AlwI	GGATC	5 cut(s)	446, 512, 593, 895, 1290
AlwNI	CAGNNNCTG	1 cut(s)	449
Aor51HI	AGCGCT	1 cut(s)	1007
AoxI	GGCC	3 cut(s)	658, 828, 1081
ApeKI	GCWGC	3 cut(s)	302, 509, 1008
ApoI	RAATTY	4 cut(s)	6, 424, 1072, 1401
AspLEI	GCGC	3 cut(s)	934, 1008, 1322
AsuC2I	CCSGG	1 cut(s)	130
AsuHPI	GGTGA	5 cut(s)	151, 230, 616, 956, 1013
AsuII	TTCGAA	1 cut(s)	636
BalI	TGGCCA	1 cut(s)	1083
BanII	GRGCYC	1 cut(s)	1239
BauI	CACGAG	1 cut(s)	1276
Bbv12I	GWGCWC	1 cut(s)	1239
BbvI	GCAGC	3 cut(s)	314, 496, 995
BccI	CCATC	1 cut(s)	1310
BceAI	ACGGC	1 cut(s)	924
BcgI	CGANNNNNNTGC	2 cut(s)	979, 1013
BcnI	CCSGG	1 cut(s)	130
BcoDI	GTCTC	1 cut(s)	255
BfmI	CTRYAG	1 cut(s)	1188
BfoI	RGCGCY	2 cut(s)	935, 1009
BisI	GCNGC	3 cut(s)	303, 510, 1009
BlsI	GCNGC	3 cut(s)	304, 511, 1010
BmcAI	AGTACT	1 cut(s)	1061
Bme1390I	CCNGG	1 cut(s)	130
BmiI	GGNNCC	1 cut(s)	1027
BmrFI	CCNGG	1 cut(s)	130
BmsI	GCATC	4 cut(s)	521, 597, 619, 1339
BoxI	GACNNNNGTC	2 cut(s)	212, 974
Bpu14I	TTCGAA	1 cut(s)	636
BpuMI	CCSGG	1 cut(s)	130
BsaBI	GATNNNNATC	1 cut(s)	886
BsaI	GGTCTC	1 cut(s)	255
BsaJI	CCNNGG	1 cut(s)	940
BsaWI	WCCGGW	3 cut(s)	454, 601, 1294
Bsc4I	CCNNNNNNNGG	4 cut(s)	340, 826, 878, 1035
Bse118I	RCCGGY	2 cut(s)	384, 656
Bse1I	ACTGG	3 cut(s)	619, 883, 1228
Bse8I	GATNNNNATC	1 cut(s)	886
BseDI	CCNNGG	1 cut(s)	940
BseJI	GATNNNNATC	1 cut(s)	886
BseLI	CCNNNNNNNGG	4 cut(s)	340, 826, 878, 1035
BseMII	CTCAG	1 cut(s)	1077
BseNI	ACTGG	3 cut(s)	619, 883, 1228
BseX3I	CGGCCG	1 cut(s)	658
BseXI	GCAGC	3 cut(s)	314, 496, 995
Bsh1285I	CGRYCG	1 cut(s)	661
BshFI	GGCC	3 cut(s)	660, 830, 1083
BsiEI	CGRYCG	1 cut(s)	661
BsiHKAI	GWGCWC	1 cut(s)	1239
BsiSI	CCGG	6 cut(s)	129, 385, 455, 602, 657, 1295
BslFI	GGGAC	1 cut(s)	854
BslI	CCNNNNNNNGG	4 cut(s)	340, 826, 878, 1035
BsmAI	GTCTC	1 cut(s)	255
BsmFI	GGGAC	1 cut(s)	854
BsnI	GGCC	3 cut(s)	660, 830, 1083
Bso31I	GGTCTC	1 cut(s)	255
Bsp119I	TTCGAA	1 cut(s)	636
Bsp1286I	GDGCHC	1 cut(s)	1239
Bsp143I	GATC	7 cut(s)	312, 451, 517, 598, 850, 887, 1282
BspACI	CCGC	3 cut(s)	773, 1366, 1377
BspANI	GGCC	3 cut(s)	660, 830, 1083
BspCNI	CTCAG	1 cut(s)	1076
BspHI	TCATGA	1 cut(s)	613
BspLI	GGNNCC	1 cut(s)	1027
BspPI	GGATC	5 cut(s)	446, 512, 593, 895, 1290
BspT104I	TTCGAA	1 cut(s)	636
BspTNI	GGTCTC	1 cut(s)	255
BsrFI	RCCGGY	2 cut(s)	384, 656
BsrI	ACTGG	3 cut(s)	619, 883, 1228
BssAI	RCCGGY	2 cut(s)	384, 656
BssECI	CCNNGG	1 cut(s)	940
BssMI	GATC	7 cut(s)	312, 451, 517, 598, 850, 887, 1282
BssSI	CACGAG	1 cut(s)	1276
Bst2BI	CACGAG	1 cut(s)	1276
Bst4CI	ACNGT	6 cut(s)	104, 115, 235, 375, 735, 1343
BstAPI	GCANNNNNTGC	2 cut(s)	20, 963
BstBI	TTCGAA	1 cut(s)	636
BstC8I	GCNNGC	2 cut(s)	930, 988
BstDEI	CTNAG	2 cut(s)	329, 1063
BstDSI	CCRYGG	1 cut(s)	940
BstH2I	RGCGCY	2 cut(s)	935, 1009
BstHHI	GCGC	3 cut(s)	934, 1008, 1322
BstKTI	GATC	7 cut(s)	315, 454, 520, 601, 853, 890, 1285
BstMAI	GTCTC	1 cut(s)	255
BstMBI	GATC	7 cut(s)	312, 451, 517, 598, 850, 887, 1282
BstMCI	CGRYCG	1 cut(s)	661
BstMWI	GCNNNNNNNGC	7 cut(s)	20, 299, 764, 963, 1003, 1326, 1363
BstNSI	RCATGY	1 cut(s)	1054
BstPAI	GACNNNNGTC	2 cut(s)	212, 974
BstSCI	CCNGG	1 cut(s)	128
BstSFI	CTRYAG	1 cut(s)	1188
BstV1I	GCAGC	3 cut(s)	314, 496, 995
BstX2I	RGATCY	2 cut(s)	887, 1282
BstYI	RGATCY	2 cut(s)	887, 1282
BstZI	CGGCCG	1 cut(s)	658
BsuRI	GGCC	3 cut(s)	660, 830, 1083
BtgI	CCRYGG	1 cut(s)	940
BtsI	GCAGTG	1 cut(s)	807
BtsIMutI	CAGTG	1 cut(s)	807
Cac8I	GCNNGC	2 cut(s)	930, 988
CaiI	CAGNNNCTG	1 cut(s)	449
CciI	TCATGA	1 cut(s)	613
CfoI	GCGC	3 cut(s)	934, 1008, 1322
Cfr10I	RCCGGY	2 cut(s)	384, 656
Csp6I	GTAC	3 cut(s)	622, 1039, 1060
CviAII	CATG	5 cut(s)	45, 205, 614, 752, 1051
CviQI	GTAC	3 cut(s)	622, 1039, 1060
DdeI	CTNAG	2 cut(s)	329, 1063
DpnI	GATC	7 cut(s)	314, 453, 519, 600, 852, 889, 1284
DpnII	GATC	7 cut(s)	312, 451, 517, 598, 850, 887, 1282
EaeI	YGGCCR	2 cut(s)	658, 1081
EagI	CGGCCG	1 cut(s)	658
Ecl136II	GAGCTC	1 cut(s)	1237
EclXI	CGGCCG	1 cut(s)	658
Eco24I	GRGCYC	1 cut(s)	1239
Eco31I	GGTCTC	1 cut(s)	255
Eco47III	AGCGCT	1 cut(s)	1007
Eco52I	CGGCCG	1 cut(s)	658
Eco53kI	GAGCTC	1 cut(s)	1237
Eco57I	CTGAAG	1 cut(s)	1375
EcoICRI	GAGCTC	1 cut(s)	1237
EcoT22I	ATGCAT	2 cut(s)	50, 612
EcoT38I	GRGCYC	1 cut(s)	1239
FaeI	CATG	5 cut(s)	48, 208, 617, 755, 1054
FaqI	GGGAC	1 cut(s)	854
FatI	CATG	5 cut(s)	44, 204, 613, 751, 1050
FauI	CCCGC	3 cut(s)	780, 1359, 1370
Fnu4HI	GCNGC	3 cut(s)	303, 510, 1009
FriOI	GRGCYC	1 cut(s)	1239
Fsp4HI	GCNGC	3 cut(s)	303, 510, 1009
GlaI	GCGC	3 cut(s)	933, 1007, 1321
GluI	GCNGC	3 cut(s)	303, 510, 1009
HaeII	RGCGCY	2 cut(s)	935, 1009
HaeIII	GGCC	3 cut(s)	660, 830, 1083
HapII	CCGG	6 cut(s)	129, 385, 455, 602, 657, 1295
HhaI	GCGC	3 cut(s)	934, 1008, 1322
Hin1II	CATG	5 cut(s)	48, 208, 617, 755, 1054
Hin6I	GCGC	3 cut(s)	932, 1006, 1320
HinP1I	GCGC	3 cut(s)	932, 1006, 1320
HincII	GTYRAC	1 cut(s)	982
HindII	GTYRAC	1 cut(s)	982
HinfI	GANTC	4 cut(s)	198, 493, 838, 1418
HpaII	CCGG	6 cut(s)	129, 385, 455, 602, 657, 1295
HphI	GGTGA	5 cut(s)	151, 230, 616, 956, 1013
Hpy166II	GTNNAC	3 cut(s)	543, 922, 982
Hpy188I	TCNGA	5 cut(s)	517, 598, 1066, 1291, 1394
Hpy188III	TCNNGA	5 cut(s)	525, 614, 905, 1124, 1313
Hpy8I	GTNNAC	3 cut(s)	543, 922, 982
Hpy99I	CGWCG	1 cut(s)	218
HpyAV	CCTTC	3 cut(s)	331, 531, 1150
HpyCH4III	ACNGT	6 cut(s)	104, 115, 235, 375, 735, 1343
HpyCH4IV	ACGT	1 cut(s)	213
HpyF10VI	GCNNNNNNNGC	7 cut(s)	20, 299, 764, 963, 1003, 1326, 1363
HpyF3I	CTNAG	2 cut(s)	329, 1063
HpySE526I	ACGT	1 cut(s)	213
Hsp92II	CATG	5 cut(s)	48, 208, 617, 755, 1054
HspAI	GCGC	3 cut(s)	932, 1006, 1320
Kzo9I	GATC	7 cut(s)	312, 451, 517, 598, 850, 887, 1282
LmnI	GCTCC	4 cut(s)	28, 710, 1025, 1234
Lsp1109I	GCAGC	3 cut(s)	314, 496, 995
LweI	GCATC	4 cut(s)	521, 597, 619, 1339
MaeII	ACGT	1 cut(s)	213
MaeIII	GTNAC	5 cut(s)	104, 218, 479, 548, 1385
MalI	GATC	7 cut(s)	314, 453, 519, 600, 852, 889, 1284
MboI	GATC	7 cut(s)	312, 451, 517, 598, 850, 887, 1282
MboII	GAAGA	5 cut(s)	385, 492, 845, 1188, 1191
MfeI	CAATTG	1 cut(s)	961
MflI	RGATCY	2 cut(s)	887, 1282
MhlI	GDGCHC	1 cut(s)	1239
MlsI	TGGCCA	1 cut(s)	1083
MluNI	TGGCCA	1 cut(s)	1083
MmeI	TCCRAC	1 cut(s)	405
Mox20I	TGGCCA	1 cut(s)	1083
Mph1103I	ATGCAT	2 cut(s)	50, 612
MscI	TGGCCA	1 cut(s)	1083
MseI	TTAA	8 cut(s)	72, 360, 422, 489, 1055, 1161, 1172, 1423
Msp20I	TGGCCA	1 cut(s)	1083
MspI	CCGG	6 cut(s)	129, 385, 455, 602, 657, 1295
MspR9I	CCNGG	1 cut(s)	130
MunI	CAATTG	1 cut(s)	961
MwoI	GCNNNNNNNGC	7 cut(s)	20, 299, 764, 963, 1003, 1326, 1363
NciI	CCSGG	1 cut(s)	130
NdeII	GATC	7 cut(s)	312, 451, 517, 598, 850, 887, 1282
NlaIII	CATG	5 cut(s)	48, 208, 617, 755, 1054
NlaIV	GGNNCC	1 cut(s)	1027
NmuCI	GTSAC	1 cut(s)	218
NsiI	ATGCAT	2 cut(s)	50, 612
NspI	RCATGY	1 cut(s)	1054
NspV	TTCGAA	1 cut(s)	636
PagI	TCATGA	1 cut(s)	613
PfeI	GAWTC	4 cut(s)	198, 493, 838, 1418
PflMI	CCANNNNNTGG	1 cut(s)	1035
PfoI	TCCNGGA	1 cut(s)	128
PkrI	GCNGC	3 cut(s)	304, 511, 1010
PshAI	GACNNNNGTC	2 cut(s)	212, 974
PsiI	TTATAA	1 cut(s)	465
Psp124BI	GAGCTC	1 cut(s)	1239
PspN4I	GGNNCC	1 cut(s)	1027
PstNI	CAGNNNCTG	1 cut(s)	449
PsuI	RGATCY	2 cut(s)	887, 1282
RsaI	GTAC	3 cut(s)	623, 1040, 1061
RsaNI	GTAC	3 cut(s)	622, 1039, 1060
SacI	GAGCTC	1 cut(s)	1239
SaqAI	TTAA	8 cut(s)	72, 360, 422, 489, 1055, 1161, 1172, 1423
SatI	GCNGC	3 cut(s)	303, 510, 1009
Sau3AI	GATC	7 cut(s)	312, 451, 517, 598, 850, 887, 1282
ScaI	AGTACT	1 cut(s)	1061
ScrFI	CCNGG	1 cut(s)	130
SduI	GDGCHC	1 cut(s)	1239
SfaNI	GCATC	4 cut(s)	521, 597, 619, 1339
SfcI	CTRYAG	1 cut(s)	1188
SfuI	TTCGAA	1 cut(s)	636
SsiI	CCGC	3 cut(s)	773, 1366, 1377
SstI	GAGCTC	1 cut(s)	1239
StyD4I	CCNGG	1 cut(s)	128
TaaI	ACNGT	6 cut(s)	104, 115, 235, 375, 735, 1343
TaiI	ACGT	1 cut(s)	216
TaqI	TCGA	3 cut(s)	636, 849, 1239
TatI	WGTACW	2 cut(s)	621, 1059
TfiI	GAWTC	4 cut(s)	198, 493, 838, 1418
Tru1I	TTAA	8 cut(s)	72, 360, 422, 489, 1055, 1161, 1172, 1423
Tru9I	TTAA	8 cut(s)	72, 360, 422, 489, 1055, 1161, 1172, 1423
TscAI	CASTG	1 cut(s)	814
TseFI	GTSAC	1 cut(s)	218
TseI	GCWGC	3 cut(s)	302, 509, 1008
Tsp45I	GTSAC	1 cut(s)	218
TspDTI	ATGAA	5 cut(s)	17, 33, 357, 550, 588
TspGWI	ACGGA	1 cut(s)	123
TspRI	CASTG	1 cut(s)	814
Van91I	CCANNNNNTGG	1 cut(s)	1035
XapI	RAATTY	4 cut(s)	6, 424, 1072, 1401
XceI	RCATGY	1 cut(s)	1054
XcmI	CCANNNNNNNNNTGG	1 cut(s)	758
ZrmI	AGTACT	1 cut(s)	1061
Zsp2I	ATGCAT	2 cut(s)	50, 612

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.