Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8408147.1

Orthogroup ID

OG0000899

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 506

Gene Structure 506 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8408147.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 256 bp

caagcaaaactacactgccaatagcccataccagactaacttgaatcagtcgctcgatcttctatacaccaaagtccctcctactggatttggatctggttcaacaggtcaagacccggaccatgtgaacgggctggcgctatgccgtggtgatgtttcaagaaacaattgcaagacttgtgtcgttaacgcaagcaagaagctctgtgagcgctgcccagatagaaaaggagccataacgtggtacgataattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0030312 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071944 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1204 Stress-antifung

Protein Analysis

84

Amino Acids

9.21

Weight (kDa)

8.68

Isoelectric Point (pI)

19.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000899)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22060
fragaria_vesca	FvH4_2g10161
malus_domestica	MD05G1056000.v1.1 MD05G1056300.v1.1 MD10G1064400.v1.1
prunus_persica	Prupe.3G109800_v2.0.a1 Prupe.3G110100_v2.0.a1 Prupe.3G110200_v2.0.a1 Prupe.3G110300_v2.0.a1 Prupe.8G086600_v2.0.a1
pyrus_communis	pycom05g04770 pycom05g04780
rosa_chinensis	RchiOBHm_Chr1g0328011 RchiOBHm_Chr1g0328031 RchiOBHm_Chr2g0158681 RchiOBHm_Chr2g0160231 RchiOBHm_Chr2g0160251
rosa_laevigata	RLG00000014015 RLG00000021106 RLG00000021206 RLG00000021207 RLG00000029943 RLG00000029944 RLG00000029946 RLG00000029948
rosa_multiflora	Rmu_co8269469.1_g000001 Rmu_co8408147.1_g000001 Rmu_sc0000403.1_g000003 Rmu_sc0008269.1_g000008 Rmu_sc0020806.1_g000002
rosa_roxburghii	Rroxscaffold_2G00091070 Rroxscaffold_2G00091110 Rroxscaffold_4G00321960 Rroxscaffold_4G00321970 Rroxscaffold_4G00321980 Rroxscaffold_4G00322000 Rroxscaffold_4G00322030 Rroxscaffold_7G00200860 Rroxscaffold_7G00200940
rosa_rugosa	Rorug01G0073200 Rorug01G0073200 Rorug01G0073300 Rorug02G0471400 Rorug02G0472000 Rorug02G0482400 Rorug02G0482400
rosa_samantha	Rh1BG071900 Rh1BG072100 Rh2AG537200 Rh2AG547800 Rh2BG550400 Rh2BG561200 Rh2BG561400 Rh2CG520900 Rh2CG531800 Rh2CG532100 Rh6AG153200 Rh6CG149000
rosa_wichuraiana	Rw0G019500 Rw1G006970 Rw1G006980 Rw1G006990 Rw2G044480 Rw2G045320 Rw6G013180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	241
AclWI	GGATC	1 cut(s)	101
AfaI	GTAC	1 cut(s)	246
AfeI	AGCGCT	1 cut(s)	213
AfiI	CCNNNNNNNGG	2 cut(s)	84, 241
AgsI	TTSAA	3 cut(s)	44, 103, 160
AluBI	AGCT	1 cut(s)	203
AluI	AGCT	1 cut(s)	203
AlwI	GGATC	1 cut(s)	101
Aor51HI	AGCGCT	1 cut(s)	213
ApeKI	GCWGC	1 cut(s)	214
AspLEI	GCGC	2 cut(s)	140, 214
AspS9I	GGNCC	1 cut(s)	119
AsuC2I	CCSGG	1 cut(s)	117
AsuHPI	GGTGA	1 cut(s)	162
AvaII	GGWCC	1 cut(s)	119
BbvI	GCAGC	1 cut(s)	201
BceAI	ACGGC	1 cut(s)	130
BcnI	CCSGG	1 cut(s)	117
BfoI	RGCGCY	2 cut(s)	141, 215
BisI	GCNGC	1 cut(s)	215
BlsI	GCNGC	1 cut(s)	216
Bme1390I	CCNGG	1 cut(s)	117
Bme18I	GGWCC	1 cut(s)	119
BmgT120I	GGNCC	1 cut(s)	119
BmiI	GGNNCC	1 cut(s)	233
BmrFI	CCNGG	1 cut(s)	117
BoxI	GACNNNNGTC	1 cut(s)	180
BpuMI	CCSGG	1 cut(s)	117
BsaBI	GATNNNNATC	1 cut(s)	92
BsaJI	CCNNGG	1 cut(s)	146
Bsc4I	CCNNNNNNNGG	2 cut(s)	84, 241
Bse1I	ACTGG	1 cut(s)	89
Bse8I	GATNNNNATC	1 cut(s)	92
BseDI	CCNNGG	1 cut(s)	146
BseJI	GATNNNNATC	1 cut(s)	92
BseLI	CCNNNNNNNGG	2 cut(s)	84, 241
BseNI	ACTGG	1 cut(s)	89
BseXI	GCAGC	1 cut(s)	201
BsiSI	CCGG	1 cut(s)	117
BslFI	GGGAC	1 cut(s)	60
BslI	CCNNNNNNNGG	2 cut(s)	84, 241
BsmFI	GGGAC	1 cut(s)	60
Bsp143I	GATC	2 cut(s)	56, 93
BspLI	GGNNCC	1 cut(s)	233
BspPI	GGATC	1 cut(s)	101
BsrI	ACTGG	1 cut(s)	89
BssECI	CCNNGG	1 cut(s)	146
BssMI	GATC	2 cut(s)	56, 93
BstC8I	GCNNGC	2 cut(s)	136, 194
BstDSI	CCRYGG	1 cut(s)	146
BstH2I	RGCGCY	2 cut(s)	141, 215
BstHHI	GCGC	2 cut(s)	140, 214
BstKTI	GATC	2 cut(s)	59, 96
BstMBI	GATC	2 cut(s)	56, 93
BstMWI	GCNNNNNNNGC	1 cut(s)	209
BstPAI	GACNNNNGTC	1 cut(s)	180
BstSCI	CCNGG	1 cut(s)	115
BstV1I	GCAGC	1 cut(s)	201
BstX2I	RGATCY	1 cut(s)	93
BstYI	RGATCY	1 cut(s)	93
BtgI	CCRYGG	1 cut(s)	146
BtsI	GCAGTG	1 cut(s)	13
BtsIMutI	CAGTG	1 cut(s)	13
Cac8I	GCNNGC	2 cut(s)	136, 194
CfoI	GCGC	2 cut(s)	140, 214
Cfr13I	GGNCC	1 cut(s)	119
Csp6I	GTAC	1 cut(s)	245
CviAII	CATG	1 cut(s)	123
CviJI	RGCY	4 cut(s)	25, 134, 203, 234
CviKI_1	RGCY	4 cut(s)	25, 134, 203, 234
CviQI	GTAC	1 cut(s)	245
DpnI	GATC	2 cut(s)	58, 95
DpnII	GATC	2 cut(s)	56, 93
Eco47I	GGWCC	1 cut(s)	119
Eco47III	AGCGCT	1 cut(s)	213
FaeI	CATG	1 cut(s)	126
FaiI	YATR	5 cut(s)	29, 65, 124, 143, 237
FaqI	GGGAC	1 cut(s)	60
FatI	CATG	1 cut(s)	122
Fnu4HI	GCNGC	1 cut(s)	215
Fsp4HI	GCNGC	1 cut(s)	215
GlaI	GCGC	2 cut(s)	139, 213
GluI	GCNGC	1 cut(s)	215
HaeII	RGCGCY	2 cut(s)	141, 215
HapII	CCGG	1 cut(s)	117
HhaI	GCGC	2 cut(s)	140, 214
Hin1II	CATG	1 cut(s)	126
Hin6I	GCGC	2 cut(s)	138, 212
HinP1I	GCGC	2 cut(s)	138, 212
HincII	GTYRAC	1 cut(s)	188
HindII	GTYRAC	1 cut(s)	188
HinfI	GANTC	1 cut(s)	44
HpaI	GTTAAC	1 cut(s)	188
HpaII	CCGG	1 cut(s)	117
HphI	GGTGA	1 cut(s)	162
Hpy166II	GTNNAC	2 cut(s)	128, 188
Hpy188III	TCNNGA	2 cut(s)	111, 160
Hpy8I	GTNNAC	2 cut(s)	128, 188
HpyCH4IV	ACGT	1 cut(s)	240
HpyCH4V	TGCA	1 cut(s)	172
HpyF10VI	GCNNNNNNNGC	1 cut(s)	209
HpySE526I	ACGT	1 cut(s)	240
Hsp92II	CATG	1 cut(s)	126
HspAI	GCGC	2 cut(s)	138, 212
KspAI	GTTAAC	1 cut(s)	188
Kzo9I	GATC	2 cut(s)	56, 93
LmnI	GCTCC	1 cut(s)	231
LpnPI	CCDG	7 cut(s)	45, 70, 82, 91, 120, 130, 232
Lsp1109I	GCAGC	1 cut(s)	201
MaeII	ACGT	1 cut(s)	240
MalI	GATC	2 cut(s)	58, 95
MboI	GATC	2 cut(s)	56, 93
MboII	GAAGA	1 cut(s)	51
MfeI	CAATTG	1 cut(s)	167
MflI	RGATCY	1 cut(s)	93
MluCI	AATT	2 cut(s)	167, 251
MnlI	CCTC	1 cut(s)	88
MseI	TTAA	2 cut(s)	187, 254
MspI	CCGG	1 cut(s)	117
MspR9I	CCNGG	1 cut(s)	117
MunI	CAATTG	1 cut(s)	167
MwoI	GCNNNNNNNGC	1 cut(s)	209
NciI	CCSGG	1 cut(s)	117
NdeII	GATC	2 cut(s)	56, 93
NlaIII	CATG	1 cut(s)	126
NlaIV	GGNNCC	1 cut(s)	233
PfeI	GAWTC	1 cut(s)	44
PflMI	CCANNNNNTGG	1 cut(s)	241
PkrI	GCNGC	1 cut(s)	216
PshAI	GACNNNNGTC	1 cut(s)	180
PspN4I	GGNNCC	1 cut(s)	233
PspPI	GGNCC	1 cut(s)	119
PsuI	RGATCY	1 cut(s)	93
RsaI	GTAC	1 cut(s)	246
RsaNI	GTAC	1 cut(s)	245
SaqAI	TTAA	2 cut(s)	187, 254
SatI	GCNGC	1 cut(s)	215
Sau3AI	GATC	2 cut(s)	56, 93
Sau96I	GGNCC	1 cut(s)	119
ScrFI	CCNGG	1 cut(s)	117
SetI	ASST	3 cut(s)	110, 205, 243
SinI	GGWCC	1 cut(s)	119
Sse9I	AATT	2 cut(s)	167, 251
StyD4I	CCNGG	1 cut(s)	115
TaiI	ACGT	1 cut(s)	243
TaqI	TCGA	1 cut(s)	55
TasI	AATT	2 cut(s)	167, 251
TfiI	GAWTC	1 cut(s)	44
Tru1I	TTAA	2 cut(s)	187, 254
Tru9I	TTAA	2 cut(s)	187, 254
TscAI	CASTG	1 cut(s)	20
TseI	GCWGC	1 cut(s)	214
TspRI	CASTG	1 cut(s)	20
Van91I	CCANNNNNTGG	1 cut(s)	241
VpaK11BI	GGWCC	1 cut(s)	119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.