Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0000899

Physical Location & Seq

Genomic Coordinates Reverse (-)

19433764 .. 19435379

Gene Structure 1616 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG149000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGGAGCCTAAATTATACAGCCATGAAAACTACACCGCCAATAGGACATATGATGCGCACTTGACTCGGTTATTCATCCTTTTACAGACCAAAGTTCCTCCCACCGGATTTGGCCTTGCTTCGACTGGTCAAGCCCAAAAGAAAGCAAATGGCCTTGCACTTTGCCGAGGCGATGCCTCAAGTGAAGATTGCACTACTTGTGTGGTTGATGCAAGCAAAGATATTAGAGAGTTCTGCCCGAACAGCAAAGGAGCCATAATATGGTATGACCGCTGCCTCTTAAAGTACTCAAATGTGGACTTCTTTGGGAAAATTGATAACAAAAACAAGTTCTATATGTGGAACGTTCAAGAAGTACAGAATCCCACACTTTTCAATGAGAGAGTTAAGGAATTGTTGAGTGGATTAGCTGTTGAAGCTTCTGATGGTGGTGCTAATCCGAAGTTTTATGCAACTGGTGAGCTGCAACTTGATACATTCACAACACTAGATGCTTTGGCTACATGCACAAGGGACCTCTCATCCCCAGATTGTAAGAAGTGTCTTGATGGTGCAATAAGTGAATTGCCAAACTGCTGCAATGCAAAGCGAGGTGGGCTTGTGGGTGGGAGTTGTAATGTTGGATTTGAACTTTACCCAATTGTTGGGACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0030312 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071944 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1204 Stress-antifung

Protein Analysis

217

Amino Acids

23.75

Weight (kDa)

5.75

Isoelectric Point (pI)

34.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stress-antifung	PF01657	9 - 98	1.3e-21	Salt stress response/antifungal
Stress-antifung	PF01657	120 - 211	5.3e-09	Salt stress response/antifungal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000899)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22060
fragaria_vesca	FvH4_2g10161
malus_domestica	MD05G1056000.v1.1 MD05G1056300.v1.1 MD10G1064400.v1.1
prunus_persica	Prupe.3G109800_v2.0.a1 Prupe.3G110100_v2.0.a1 Prupe.3G110200_v2.0.a1 Prupe.3G110300_v2.0.a1 Prupe.8G086600_v2.0.a1
pyrus_communis	pycom05g04770 pycom05g04780
rosa_chinensis	RchiOBHm_Chr1g0328011 RchiOBHm_Chr1g0328031 RchiOBHm_Chr2g0158681 RchiOBHm_Chr2g0160231 RchiOBHm_Chr2g0160251
rosa_laevigata	RLG00000014015 RLG00000021106 RLG00000021206 RLG00000021207 RLG00000029943 RLG00000029944 RLG00000029946 RLG00000029948
rosa_multiflora	Rmu_co8269469.1_g000001 Rmu_co8408147.1_g000001 Rmu_sc0000403.1_g000003 Rmu_sc0008269.1_g000008 Rmu_sc0020806.1_g000002
rosa_roxburghii	Rroxscaffold_2G00091070 Rroxscaffold_2G00091110 Rroxscaffold_4G00321960 Rroxscaffold_4G00321970 Rroxscaffold_4G00321980 Rroxscaffold_4G00322000 Rroxscaffold_4G00322030 Rroxscaffold_7G00200860 Rroxscaffold_7G00200940
rosa_rugosa	Rorug01G0073200 Rorug01G0073200 Rorug01G0073300 Rorug02G0471400 Rorug02G0472000 Rorug02G0482400 Rorug02G0482400
rosa_samantha	Rh1BG071900 Rh1BG072100 Rh2AG537200 Rh2AG547800 Rh2BG550400 Rh2BG561200 Rh2BG561400 Rh2CG520900 Rh2CG531800 Rh2CG532100 Rh6AG153200 Rh6CG149000
rosa_wichuraiana	Rw0G019500 Rw1G006970 Rw1G006980 Rw1G006990 Rw2G044480 Rw2G045320 Rw6G013180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	57
AccB7I	CCANNNNNTGG	2 cut(s)	261, 644
AciI	CCGC	2 cut(s)	36, 271
AclI	AACGTT	1 cut(s)	345
AfaI	GTAC	2 cut(s)	287, 357
AfiI	CCNNNNNNNGG	4 cut(s)	42, 104, 261, 644
AgsI	TTSAA	4 cut(s)	350, 376, 416, 629
AluBI	AGCT	3 cut(s)	410, 419, 463
AluI	AGCT	3 cut(s)	410, 419, 463
AoxI	GGCC	2 cut(s)	112, 151
ApeKI	GCWGC	3 cut(s)	273, 463, 576
AspLEI	GCGC	1 cut(s)	58
AspS9I	GGNCC	1 cut(s)	514
AsuHPI	GGTGA	1 cut(s)	470
AvaII	GGWCC	1 cut(s)	514
BbvI	GCAGC	3 cut(s)	260, 450, 563
BccI	CCATC	2 cut(s)	419, 542
BcgI	CGANNNNNNTGC	2 cut(s)	47, 81
BfaI	CTAG	1 cut(s)	488
BisI	GCNGC	3 cut(s)	274, 464, 577
BlsI	GCNGC	3 cut(s)	275, 465, 578
BmcAI	AGTACT	1 cut(s)	287
Bme18I	GGWCC	1 cut(s)	514
BmgT120I	GGNCC	1 cut(s)	514
BmiI	GGNNCC	3 cut(s)	6, 253, 515
BmsI	GCATC	4 cut(s)	43, 163, 199, 481
BpuEI	CTTGAG	1 cut(s)	163
BsaJI	CCNNGG	1 cut(s)	166
BsaWI	WCCGGW	1 cut(s)	104
Bsc4I	CCNNNNNNNGG	4 cut(s)	42, 104, 261, 644
Bse1I	ACTGG	2 cut(s)	130, 460
Bse3DI	GCAATG	1 cut(s)	586
BseDI	CCNNGG	1 cut(s)	166
BseGI	GGATG	2 cut(s)	75, 521
BseLI	CCNNNNNNNGG	4 cut(s)	42, 104, 261, 644
BseMI	GCAATG	1 cut(s)	586
BseNI	ACTGG	2 cut(s)	130, 460
BseXI	GCAGC	3 cut(s)	260, 450, 563
BshFI	GGCC	2 cut(s)	114, 153
BsiSI	CCGG	1 cut(s)	105
BslFI	GGGAC	1 cut(s)	527
BslI	CCNNNNNNNGG	4 cut(s)	42, 104, 261, 644
BsmFI	GGGAC	1 cut(s)	527
BsnI	GGCC	2 cut(s)	114, 153
BspACI	CCGC	2 cut(s)	36, 271
BspANI	GGCC	2 cut(s)	114, 153
BspLI	GGNNCC	3 cut(s)	6, 253, 515
BsrDI	GCAATG	1 cut(s)	586
BsrI	ACTGG	2 cut(s)	130, 460
BssECI	CCNNGG	1 cut(s)	166
BstC8I	GCNNGC	1 cut(s)	214
BstF5I	GGATG	2 cut(s)	75, 521
BstHHI	GCGC	1 cut(s)	58
BstMWI	GCNNNNNNNGC	3 cut(s)	243, 416, 595
BstNSI	RCATGY	1 cut(s)	507
BstV1I	GCAGC	3 cut(s)	260, 450, 563
BsuRI	GGCC	2 cut(s)	114, 153
BtgZI	GCGATG	1 cut(s)	186
BtsCI	GGATG	2 cut(s)	75, 521
Cac8I	GCNNGC	1 cut(s)	214
CfoI	GCGC	1 cut(s)	58
Cfr13I	GGNCC	1 cut(s)	514
Csp6I	GTAC	2 cut(s)	286, 356
CspCI	CAANNNNNGTGG	2 cut(s)	91, 126
CviAII	CATG	2 cut(s)	23, 504
CviQI	GTAC	2 cut(s)	286, 356
Eco47I	GGWCC	1 cut(s)	514
EcoO109I	RGGNCCY	1 cut(s)	514
FaeI	CATG	2 cut(s)	26, 507
FaqI	GGGAC	1 cut(s)	527
FatI	CATG	2 cut(s)	22, 503
FauNDI	CATATG	1 cut(s)	49
Fnu4HI	GCNGC	3 cut(s)	274, 464, 577
FokI	GGATG	2 cut(s)	62, 508
Fsp4HI	GCNGC	3 cut(s)	274, 464, 577
FspAI	RTGCGCAY	1 cut(s)	57
FspBI	CTAG	1 cut(s)	488
FspI	TGCGCA	1 cut(s)	57
GlaI	GCGC	1 cut(s)	57
GluI	GCNGC	3 cut(s)	274, 464, 577
HaeIII	GGCC	2 cut(s)	114, 153
HapII	CCGG	1 cut(s)	105
HhaI	GCGC	1 cut(s)	58
Hin1II	CATG	2 cut(s)	26, 507
Hin6I	GCGC	1 cut(s)	56
HinP1I	GCGC	1 cut(s)	56
HindIII	AAGCTT	1 cut(s)	417
HinfI	GANTC	2 cut(s)	64, 361
HpaII	CCGG	1 cut(s)	105
HphI	GGTGA	1 cut(s)	470
Hpy166II	GTNNAC	1 cut(s)	298
Hpy188I	TCNGA	2 cut(s)	424, 441
Hpy188III	TCNNGA	2 cut(s)	350, 545
Hpy8I	GTNNAC	1 cut(s)	298
HpyCH4IV	ACGT	1 cut(s)	345
HpyCH4V	TGCA	9 cut(s)	158, 192, 212, 452, 466, 507, 554, 579, 584
HpyF10VI	GCNNNNNNNGC	3 cut(s)	243, 416, 595
HpySE526I	ACGT	1 cut(s)	345
Hsp92II	CATG	2 cut(s)	26, 507
HspAI	GCGC	1 cut(s)	56
LmnI	GCTCC	2 cut(s)	4, 251
LpnPI	CCDG	4 cut(s)	111, 118, 441, 540
Lsp1109I	GCAGC	3 cut(s)	260, 450, 563
LweI	GCATC	4 cut(s)	43, 163, 199, 481
MaeI	CTAG	1 cut(s)	488
MaeII	ACGT	1 cut(s)	345
MboII	GAAGA	1 cut(s)	197
MfeI	CAATTG	1 cut(s)	639
MluCI	AATT	5 cut(s)	11, 312, 392, 563, 639
MlyI	GAGTC	1 cut(s)	58
MmeI	TCCRAC	1 cut(s)	601
MnlI	CCTC	6 cut(s)	108, 161, 187, 287, 527, 584
MseI	TTAA	2 cut(s)	281, 387
MspA1I	CMGCKG	1 cut(s)	273
MspI	CCGG	1 cut(s)	105
MunI	CAATTG	1 cut(s)	639
MwoI	GCNNNNNNNGC	3 cut(s)	243, 416, 595
NdeI	CATATG	1 cut(s)	49
NlaIII	CATG	2 cut(s)	26, 507
NlaIV	GGNNCC	3 cut(s)	6, 253, 515
NmeAIII	GCCGAG	1 cut(s)	191
NsbI	TGCGCA	1 cut(s)	57
NspI	RCATGY	1 cut(s)	507
PfeI	GAWTC	1 cut(s)	361
PflMI	CCANNNNNTGG	2 cut(s)	261, 644
PkrI	GCNGC	3 cut(s)	275, 465, 578
PleI	GAGTC	1 cut(s)	58
PpsI	GAGTC	1 cut(s)	58
PpuMI	RGGWCCY	1 cut(s)	514
Psp1406I	AACGTT	1 cut(s)	345
Psp5II	RGGWCCY	1 cut(s)	514
PspN4I	GGNNCC	3 cut(s)	6, 253, 515
PspPI	GGNCC	1 cut(s)	514
PspPPI	RGGWCCY	1 cut(s)	514
RsaI	GTAC	2 cut(s)	287, 357
RsaNI	GTAC	2 cut(s)	286, 356
SaqAI	TTAA	2 cut(s)	281, 387
SatI	GCNGC	3 cut(s)	274, 464, 577
Sau96I	GGNCC	1 cut(s)	514
ScaI	AGTACT	1 cut(s)	287
SchI	GAGTC	1 cut(s)	58
SetI	ASST	6 cut(s)	348, 412, 421, 465, 519, 595
SfaNI	GCATC	4 cut(s)	43, 163, 199, 481
SinI	GGWCC	1 cut(s)	514
SmlI	CTYRAG	1 cut(s)	178
SmoI	CTYRAG	1 cut(s)	178
Sse9I	AATT	5 cut(s)	11, 312, 392, 563, 639
SsiI	CCGC	2 cut(s)	36, 271
SspMI	CTAG	1 cut(s)	488
TaiI	ACGT	1 cut(s)	348
TaqI	TCGA	1 cut(s)	122
TasI	AATT	5 cut(s)	11, 312, 392, 563, 639
TatI	WGTACW	2 cut(s)	285, 355
TfiI	GAWTC	1 cut(s)	361
Tru1I	TTAA	2 cut(s)	281, 387
Tru9I	TTAA	2 cut(s)	281, 387
TseI	GCWGC	3 cut(s)	273, 463, 576
TspDTI	ATGAA	2 cut(s)	39, 64
Van91I	CCANNNNNTGG	2 cut(s)	261, 644
VpaK11BI	GGWCC	1 cut(s)	514
XceI	RCATGY	1 cut(s)	507
XspI	CTAG	1 cut(s)	488
ZrmI	AGTACT	1 cut(s)	287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.