Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0000899

Physical Location & Seq

Genomic Coordinates Forward (+)

72939415 .. 72940233

Gene Structure 819 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021207

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGCATGATGACAAGTGCAATAGAAAGTTCGAAACTTCTATATATAACACCGGCCGAACCCTACTCCATTATCATAATCCAATTACCAATATGGTATGCTCCAAATCAATCCCTCTTGGTTTCTTACTGTTCTGTCTTTTCCACCATGTTGCCATTGGTGCTTCCCCACTTTACCATTTCTGTTTCAGCAAACAAAACTACACTGCCAATAGCCCGTACCAGGCTAACTTGAATCAGTTGCTCGATCTTCTATACACCAAAGTCCCTCCTACTGGATTTGGATCTGGTTCAACAGGTCAAGACCCGGACCAAGTGAACGGGCTGGCGCTATGCCGTGGTGATGTTTCAAGTAACAATTGCAAGACTTGTGTCGTTAACGCAAGCAAGAAGCTCGGTGAGCGCTGCCCGGATAGAAAAGGAGCCATAATATGGTACGATAATTGCATGTTAAAGTACTCAGATGTGGATTTCATTGGCCAAATTGATAACGCAAACAGGTTCTATATGTGGAACGTTCAAGAGGTAGATAACCCTACTCCTTTCAATGAGAAGGTTAAAGAATTATTAAGTGGATTATCTACTACAGCTTCTTCTTCTAATCCAAAGCTCTATGCTACTGGCGAGGTGGAGCTCGATAAATCAACCAAGCTATATGGTTTAGTTCAATGCACGAGGGATCTATCTGAACCGGATTGCAAGAAGTGTCTTGATGGGGCAATAAGCGAACTGCCAAACTGTTGTGATTCAAAGCAAGGTGGGCGGGTTGTGGGCGGGAGTTGTAACTTTAGATACGAAATTTACCCTTTTGTTGATTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0030312 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071944 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1204 Stress-antifung

Protein Analysis

273

Amino Acids

30.26

Weight (kDa)

6.58

Isoelectric Point (pI)

29.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stress-antifung	PF01657	61 - 154	1.4e-26	Salt stress response/antifungal
Stress-antifung	PF01657	176 - 266	4e-15	Salt stress response/antifungal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000899)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22060
fragaria_vesca	FvH4_2g10161
malus_domestica	MD05G1056000.v1.1 MD05G1056300.v1.1 MD10G1064400.v1.1
prunus_persica	Prupe.3G109800_v2.0.a1 Prupe.3G110100_v2.0.a1 Prupe.3G110200_v2.0.a1 Prupe.3G110300_v2.0.a1 Prupe.8G086600_v2.0.a1
pyrus_communis	pycom05g04770 pycom05g04780
rosa_chinensis	RchiOBHm_Chr1g0328011 RchiOBHm_Chr1g0328031 RchiOBHm_Chr2g0158681 RchiOBHm_Chr2g0160231 RchiOBHm_Chr2g0160251
rosa_laevigata	RLG00000014015 RLG00000021106 RLG00000021206 RLG00000021207 RLG00000029943 RLG00000029944 RLG00000029946 RLG00000029948
rosa_multiflora	Rmu_co8269469.1_g000001 Rmu_co8408147.1_g000001 Rmu_sc0000403.1_g000003 Rmu_sc0008269.1_g000008 Rmu_sc0020806.1_g000002
rosa_roxburghii	Rroxscaffold_2G00091070 Rroxscaffold_2G00091110 Rroxscaffold_4G00321960 Rroxscaffold_4G00321970 Rroxscaffold_4G00321980 Rroxscaffold_4G00322000 Rroxscaffold_4G00322030 Rroxscaffold_7G00200860 Rroxscaffold_7G00200940
rosa_rugosa	Rorug01G0073200 Rorug01G0073200 Rorug01G0073300 Rorug02G0471400 Rorug02G0472000 Rorug02G0482400 Rorug02G0482400
rosa_samantha	Rh1BG071900 Rh1BG072100 Rh2AG537200 Rh2AG547800 Rh2BG550400 Rh2BG561200 Rh2BG561400 Rh2CG520900 Rh2CG531800 Rh2CG532100 Rh6AG153200 Rh6CG149000
rosa_wichuraiana	Rw0G019500 Rw1G006970 Rw1G006980 Rw1G006990 Rw2G044480 Rw2G045320 Rw6G013180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	429
AciI	CCGC	2 cut(s)	760, 771
AclI	AACGTT	1 cut(s)	513
AclWI	GGATC	2 cut(s)	289, 684
AcoI	YGGCCR	2 cut(s)	52, 475
AcsI	RAATTY	1 cut(s)	795
AfaI	GTAC	3 cut(s)	218, 434, 455
AfeI	AGCGCT	1 cut(s)	401
AfiI	CCNNNNNNNGG	3 cut(s)	220, 272, 429
AgsI	TTSAA	7 cut(s)	232, 291, 348, 518, 544, 665, 747
AjnI	CCWGG	1 cut(s)	219
AluBI	AGCT	5 cut(s)	391, 587, 607, 631, 649
AluI	AGCT	5 cut(s)	391, 587, 607, 631, 649
Alw21I	GWGCWC	1 cut(s)	633
AlwI	GGATC	2 cut(s)	289, 684
Aor51HI	AGCGCT	1 cut(s)	401
AoxI	GGCC	2 cut(s)	52, 475
ApeKI	GCWGC	1 cut(s)	402
ApoI	RAATTY	1 cut(s)	795
AspLEI	GCGC	2 cut(s)	328, 402
AspS9I	GGNCC	1 cut(s)	307
AsuC2I	CCSGG	2 cut(s)	305, 407
AsuHPI	GGTGA	2 cut(s)	350, 407
AsuII	TTCGAA	1 cut(s)	30
AvaII	GGWCC	1 cut(s)	307
BalI	TGGCCA	1 cut(s)	477
BanII	GRGCYC	1 cut(s)	633
BauI	CACGAG	1 cut(s)	670
Bbv12I	GWGCWC	1 cut(s)	633
BbvI	GCAGC	1 cut(s)	389
BccI	CCATC	1 cut(s)	704
BceAI	ACGGC	1 cut(s)	318
BcgI	CGANNNNNNTGC	2 cut(s)	373, 407
BciT130I	CCWGG	1 cut(s)	221
BcnI	CCSGG	2 cut(s)	305, 407
BfmI	CTRYAG	1 cut(s)	582
BfoI	RGCGCY	2 cut(s)	329, 403
BisI	GCNGC	1 cut(s)	403
BlsI	GCNGC	1 cut(s)	404
BmcAI	AGTACT	1 cut(s)	455
Bme1390I	CCNGG	3 cut(s)	221, 305, 407
Bme18I	GGWCC	1 cut(s)	307
BmgT120I	GGNCC	1 cut(s)	307
BmiI	GGNNCC	1 cut(s)	421
BmrFI	CCNGG	3 cut(s)	221, 305, 407
BoxI	GACNNNNGTC	1 cut(s)	368
Bpu14I	TTCGAA	1 cut(s)	30
BpuMI	CCSGG	2 cut(s)	305, 407
BsaBI	GATNNNNATC	1 cut(s)	280
BsaJI	CCNNGG	1 cut(s)	334
BsaWI	WCCGGW	1 cut(s)	688
Bsc4I	CCNNNNNNNGG	3 cut(s)	220, 272, 429
Bse118I	RCCGGY	1 cut(s)	50
Bse1I	ACTGG	2 cut(s)	277, 622
Bse8I	GATNNNNATC	1 cut(s)	280
BseBI	CCWGG	1 cut(s)	221
BseDI	CCNNGG	1 cut(s)	334
BseJI	GATNNNNATC	1 cut(s)	280
BseLI	CCNNNNNNNGG	3 cut(s)	220, 272, 429
BseMII	CTCAG	1 cut(s)	471
BseNI	ACTGG	2 cut(s)	277, 622
BseX3I	CGGCCG	1 cut(s)	52
BseXI	GCAGC	1 cut(s)	389
Bsh1285I	CGRYCG	1 cut(s)	55
BshFI	GGCC	2 cut(s)	54, 477
BsiEI	CGRYCG	1 cut(s)	55
BsiHKAI	GWGCWC	1 cut(s)	633
BsiSI	CCGG	4 cut(s)	51, 305, 407, 689
BslFI	GGGAC	1 cut(s)	248
BslI	CCNNNNNNNGG	3 cut(s)	220, 272, 429
BsmFI	GGGAC	1 cut(s)	248
BsnI	GGCC	2 cut(s)	54, 477
Bsp119I	TTCGAA	1 cut(s)	30
Bsp1286I	GDGCHC	1 cut(s)	633
Bsp143I	GATC	3 cut(s)	244, 281, 676
BspACI	CCGC	2 cut(s)	760, 771
BspANI	GGCC	2 cut(s)	54, 477
BspCNI	CTCAG	1 cut(s)	470
BspLI	GGNNCC	1 cut(s)	421
BspPI	GGATC	2 cut(s)	289, 684
BspT104I	TTCGAA	1 cut(s)	30
BsrFI	RCCGGY	1 cut(s)	50
BsrI	ACTGG	2 cut(s)	277, 622
BssAI	RCCGGY	1 cut(s)	50
BssECI	CCNNGG	1 cut(s)	334
BssMI	GATC	3 cut(s)	244, 281, 676
BssSI	CACGAG	1 cut(s)	670
Bst2BI	CACGAG	1 cut(s)	670
Bst2UI	CCWGG	1 cut(s)	221
Bst4CI	ACNGT	2 cut(s)	129, 737
BstBI	TTCGAA	1 cut(s)	30
BstC8I	GCNNGC	2 cut(s)	324, 382
BstDEI	CTNAG	1 cut(s)	457
BstDSI	CCRYGG	1 cut(s)	334
BstH2I	RGCGCY	2 cut(s)	329, 403
BstHHI	GCGC	2 cut(s)	328, 402
BstKTI	GATC	3 cut(s)	247, 284, 679
BstMBI	GATC	3 cut(s)	244, 281, 676
BstMCI	CGRYCG	1 cut(s)	55
BstMWI	GCNNNNNNNGC	3 cut(s)	158, 397, 757
BstNI	CCWGG	1 cut(s)	221
BstNSI	RCATGY	1 cut(s)	448
BstPAI	GACNNNNGTC	1 cut(s)	368
BstSCI	CCNGG	3 cut(s)	219, 303, 405
BstSFI	CTRYAG	1 cut(s)	582
BstV1I	GCAGC	1 cut(s)	389
BstX2I	RGATCY	2 cut(s)	281, 676
BstYI	RGATCY	2 cut(s)	281, 676
BstZI	CGGCCG	1 cut(s)	52
BsuRI	GGCC	2 cut(s)	54, 477
BtgI	CCRYGG	1 cut(s)	334
BtsI	GCAGTG	1 cut(s)	201
BtsIMutI	CAGTG	1 cut(s)	201
Cac8I	GCNNGC	2 cut(s)	324, 382
CfoI	GCGC	2 cut(s)	328, 402
Cfr10I	RCCGGY	1 cut(s)	50
Cfr13I	GGNCC	1 cut(s)	307
Csp6I	GTAC	3 cut(s)	217, 433, 454
CviAII	CATG	3 cut(s)	5, 146, 445
CviQI	GTAC	3 cut(s)	217, 433, 454
DdeI	CTNAG	1 cut(s)	457
DpnI	GATC	3 cut(s)	246, 283, 678
DpnII	GATC	3 cut(s)	244, 281, 676
EaeI	YGGCCR	2 cut(s)	52, 475
EagI	CGGCCG	1 cut(s)	52
Ecl136II	GAGCTC	1 cut(s)	631
EclXI	CGGCCG	1 cut(s)	52
Eco24I	GRGCYC	1 cut(s)	633
Eco47I	GGWCC	1 cut(s)	307
Eco47III	AGCGCT	1 cut(s)	401
Eco52I	CGGCCG	1 cut(s)	52
Eco53kI	GAGCTC	1 cut(s)	631
EcoICRI	GAGCTC	1 cut(s)	631
EcoRII	CCWGG	1 cut(s)	219
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	633
FaeI	CATG	3 cut(s)	8, 149, 448
FaqI	GGGAC	1 cut(s)	248
FatI	CATG	3 cut(s)	4, 145, 444
FauI	CCCGC	2 cut(s)	753, 764
Fnu4HI	GCNGC	1 cut(s)	403
FriOI	GRGCYC	1 cut(s)	633
Fsp4HI	GCNGC	1 cut(s)	403
GlaI	GCGC	2 cut(s)	327, 401
GluI	GCNGC	1 cut(s)	403
HaeII	RGCGCY	2 cut(s)	329, 403
HaeIII	GGCC	2 cut(s)	54, 477
HapII	CCGG	4 cut(s)	51, 305, 407, 689
HhaI	GCGC	2 cut(s)	328, 402
Hin1II	CATG	3 cut(s)	8, 149, 448
Hin6I	GCGC	2 cut(s)	326, 400
HinP1I	GCGC	2 cut(s)	326, 400
HincII	GTYRAC	1 cut(s)	376
HindII	GTYRAC	1 cut(s)	376
HinfI	GANTC	3 cut(s)	232, 743, 812
HpaI	GTTAAC	1 cut(s)	376
HpaII	CCGG	4 cut(s)	51, 305, 407, 689
HphI	GGTGA	2 cut(s)	350, 407
Hpy166II	GTNNAC	2 cut(s)	316, 376
Hpy188I	TCNGA	2 cut(s)	460, 685
Hpy188III	TCNNGA	3 cut(s)	299, 518, 707
Hpy8I	GTNNAC	2 cut(s)	316, 376
HpyAV	CCTTC	1 cut(s)	544
HpyCH4III	ACNGT	2 cut(s)	129, 737
HpyCH4IV	ACGT	1 cut(s)	513
HpyCH4V	TGCA	6 cut(s)	4, 18, 360, 444, 669, 696
HpyF10VI	GCNNNNNNNGC	3 cut(s)	158, 397, 757
HpyF3I	CTNAG	1 cut(s)	457
HpySE526I	ACGT	1 cut(s)	513
Hsp92II	CATG	3 cut(s)	8, 149, 448
HspAI	GCGC	2 cut(s)	326, 400
KspAI	GTTAAC	1 cut(s)	376
Kzo9I	GATC	3 cut(s)	244, 281, 676
LmnI	GCTCC	3 cut(s)	104, 419, 628
Lsp1109I	GCAGC	1 cut(s)	389
MaeII	ACGT	1 cut(s)	513
MaeIII	GTNAC	2 cut(s)	350, 779
MalI	GATC	3 cut(s)	246, 283, 678
MboI	GATC	3 cut(s)	244, 281, 676
MboII	GAAGA	3 cut(s)	239, 582, 585
MfeI	CAATTG	1 cut(s)	355
MflI	RGATCY	2 cut(s)	281, 676
MhlI	GDGCHC	1 cut(s)	633
MlsI	TGGCCA	1 cut(s)	477
MluCI	AATT	6 cut(s)	81, 355, 439, 480, 560, 795
MluNI	TGGCCA	1 cut(s)	477
MnlI	CCTC	5 cut(s)	123, 276, 514, 616, 666
Mox20I	TGGCCA	1 cut(s)	477
Mph1103I	ATGCAT	1 cut(s)	6
MscI	TGGCCA	1 cut(s)	477
MseI	TTAA	5 cut(s)	375, 449, 555, 566, 817
Msp20I	TGGCCA	1 cut(s)	477
MspI	CCGG	4 cut(s)	51, 305, 407, 689
MspR9I	CCNGG	3 cut(s)	221, 305, 407
MunI	CAATTG	1 cut(s)	355
MvaI	CCWGG	1 cut(s)	221
MwoI	GCNNNNNNNGC	3 cut(s)	158, 397, 757
NciI	CCSGG	2 cut(s)	305, 407
NdeII	GATC	3 cut(s)	244, 281, 676
NlaIII	CATG	3 cut(s)	8, 149, 448
NlaIV	GGNNCC	1 cut(s)	421
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	448
NspV	TTCGAA	1 cut(s)	30
PfeI	GAWTC	3 cut(s)	232, 743, 812
PflMI	CCANNNNNTGG	1 cut(s)	429
PkrI	GCNGC	1 cut(s)	404
PshAI	GACNNNNGTC	1 cut(s)	368
Psp124BI	GAGCTC	1 cut(s)	633
Psp1406I	AACGTT	1 cut(s)	513
Psp6I	CCWGG	1 cut(s)	219
PspGI	CCWGG	1 cut(s)	219
PspN4I	GGNNCC	1 cut(s)	421
PspPI	GGNCC	1 cut(s)	307
PsuI	RGATCY	2 cut(s)	281, 676
RsaI	GTAC	3 cut(s)	218, 434, 455
RsaNI	GTAC	3 cut(s)	217, 433, 454
SacI	GAGCTC	1 cut(s)	633
SaqAI	TTAA	5 cut(s)	375, 449, 555, 566, 817
SatI	GCNGC	1 cut(s)	403
Sau3AI	GATC	3 cut(s)	244, 281, 676
Sau96I	GGNCC	1 cut(s)	307
ScaI	AGTACT	1 cut(s)	455
ScrFI	CCNGG	3 cut(s)	221, 305, 407
SduI	GDGCHC	1 cut(s)	633
SfcI	CTRYAG	1 cut(s)	582
SfuI	TTCGAA	1 cut(s)	30
SinI	GGWCC	1 cut(s)	307
Sse9I	AATT	6 cut(s)	81, 355, 439, 480, 560, 795
SsiI	CCGC	2 cut(s)	760, 771
SstI	GAGCTC	1 cut(s)	633
StyD4I	CCNGG	3 cut(s)	219, 303, 405
TaaI	ACNGT	2 cut(s)	129, 737
TaiI	ACGT	1 cut(s)	516
TaqI	TCGA	3 cut(s)	30, 243, 633
TasI	AATT	6 cut(s)	81, 355, 439, 480, 560, 795
TatI	WGTACW	1 cut(s)	453
TfiI	GAWTC	3 cut(s)	232, 743, 812
Tru1I	TTAA	5 cut(s)	375, 449, 555, 566, 817
Tru9I	TTAA	5 cut(s)	375, 449, 555, 566, 817
TscAI	CASTG	1 cut(s)	208
TseI	GCWGC	1 cut(s)	402
TspDTI	ATGAA	1 cut(s)	460
TspRI	CASTG	1 cut(s)	208
Van91I	CCANNNNNTGG	1 cut(s)	429
VpaK11BI	GGWCC	1 cut(s)	307
XapI	RAATTY	1 cut(s)	795
XceI	RCATGY	1 cut(s)	448
XcmI	CCANNNNNNNNNTGG	1 cut(s)	152
ZrmI	AGTACT	1 cut(s)	455
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.