Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0000899

Physical Location & Seq

Genomic Coordinates Reverse (-)

5605927 .. 5606655

Gene Structure 729 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g04770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGTTCTTCTTCAAATCAATCCCTCTGGGTCTCTTAGTGCTTTGCCTTTTACACCATTCTGCAAGTGGTGCCTCCCCACTTAACCATTTTTGTTTCAGCCCAGAAAACTACACTGCTGATAGTCCATATGGTGCCAACTTGAACTCATTGTTCCATCTTTTATACACCAAAGTTCCTCCTTCTGGCTTTGGCATTGGTTCAACTGGCCAAGCTAAAAACCAAGTGAATGGCTTGGCCCTTTGCCGCGGTGATGTCTCAAGCAAAGATTGCAATACTTGCGTGGTTGACGCAAGCAAAGAGCTTCGAGACCGCTGCCCTTATCGTAAAGGAGCCATAATTTGGTACGATCGCTGCCTTTTAAAGTACTCAGATGTGAGCTTTTTTGGGCAAATTGATAGCAGGAACAGGTTCTATATGTGGAACGTCCAAGAAGTAGAGAATGGGACACTATTCAATGAGAAAGTTAAAGAGTTGTTAAGTGGGTTATCTAATGAAGCTTCTGAAGCTAATCAAAAGCTTTATGCTACTGGTGAGGTACAACTCGATACATTCACAACCCTTTATGGCATTGCTCAATGCACGAGGGACCTCTCTGGGGTTGATTGTAAAAAGTGTCTTGATAGTGGAATAAGCGAACTCCCAAACTGCTGCGATGCAAAACGAGGTGGGCGTGTTGTAGGTGGTAGCTGTAATGTTGGGTATGAACTGTATCCCATTGTCAATACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0030312 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071944 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1204 Stress-antifung

Protein Analysis

243

Amino Acids

26.6

Weight (kDa)

6.42

Isoelectric Point (pI)

25.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stress-antifung	PF01657	31 - 124	1.5e-23	Salt stress response/antifungal
Stress-antifung	PF01657	145 - 236	1.3e-12	Salt stress response/antifungal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000899)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22060
fragaria_vesca	FvH4_2g10161
malus_domestica	MD05G1056000.v1.1 MD05G1056300.v1.1 MD10G1064400.v1.1
prunus_persica	Prupe.3G109800_v2.0.a1 Prupe.3G110100_v2.0.a1 Prupe.3G110200_v2.0.a1 Prupe.3G110300_v2.0.a1 Prupe.8G086600_v2.0.a1
pyrus_communis	pycom05g04770 pycom05g04780
rosa_chinensis	RchiOBHm_Chr1g0328011 RchiOBHm_Chr1g0328031 RchiOBHm_Chr2g0158681 RchiOBHm_Chr2g0160231 RchiOBHm_Chr2g0160251
rosa_laevigata	RLG00000014015 RLG00000021106 RLG00000021206 RLG00000021207 RLG00000029943 RLG00000029944 RLG00000029946 RLG00000029948
rosa_multiflora	Rmu_co8269469.1_g000001 Rmu_co8408147.1_g000001 Rmu_sc0000403.1_g000003 Rmu_sc0008269.1_g000008 Rmu_sc0020806.1_g000002
rosa_roxburghii	Rroxscaffold_2G00091070 Rroxscaffold_2G00091110 Rroxscaffold_4G00321960 Rroxscaffold_4G00321970 Rroxscaffold_4G00321980 Rroxscaffold_4G00322000 Rroxscaffold_4G00322030 Rroxscaffold_7G00200860 Rroxscaffold_7G00200940
rosa_rugosa	Rorug01G0073200 Rorug01G0073200 Rorug01G0073300 Rorug02G0471400 Rorug02G0472000 Rorug02G0482400 Rorug02G0482400
rosa_samantha	Rh1BG071900 Rh1BG072100 Rh2AG537200 Rh2AG547800 Rh2BG550400 Rh2BG561200 Rh2BG561400 Rh2CG520900 Rh2CG531800 Rh2CG532100 Rh6AG153200 Rh6CG149000
rosa_wichuraiana	Rw0G019500 Rw1G006970 Rw1G006980 Rw1G006990 Rw2G044480 Rw2G045320 Rw6G013180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	68, 131
AccB7I	CCANNNNNTGG	1 cut(s)	339
AccII	CGCG	1 cut(s)	246
AciI	CCGC	3 cut(s)	244, 246, 310
AcoI	YGGCCR	1 cut(s)	205
AcuI	CTGAAG	1 cut(s)	522
AfaI	GTAC	3 cut(s)	344, 365, 537
AfiI	CCNNNNNNNGG	3 cut(s)	182, 339, 595
AgsI	TTSAA	4 cut(s)	13, 142, 201, 454
AluBI	AGCT	7 cut(s)	212, 301, 378, 497, 506, 517, 687
AluI	AGCT	7 cut(s)	212, 301, 378, 497, 506, 517, 687
Alw26I	GTCTC	3 cut(s)	35, 259, 300
AoxI	GGCC	2 cut(s)	205, 234
ApeKI	GCWGC	3 cut(s)	312, 351, 648
Asp700I	GAANNNNTTC	1 cut(s)	407
AspS9I	GGNCC	2 cut(s)	235, 586
AsuHPI	GGTGA	2 cut(s)	260, 542
AvaII	GGWCC	1 cut(s)	586
BalI	TGGCCA	1 cut(s)	207
BanI	GGYRCC	2 cut(s)	68, 131
BauI	CACGAG	1 cut(s)	580
BbvI	GCAGC	3 cut(s)	299, 338, 635
BccI	CCATC	1 cut(s)	162
BcgI	CGANNNNNNTGC	2 cut(s)	294, 328
BciVI	GTATCC	1 cut(s)	720
BcoDI	GTCTC	3 cut(s)	35, 259, 300
BfuI	GTATCC	1 cut(s)	720
BisI	GCNGC	4 cut(s)	244, 313, 352, 649
BlsI	GCNGC	4 cut(s)	245, 314, 353, 650
BmcAI	AGTACT	1 cut(s)	365
Bme18I	GGWCC	1 cut(s)	586
BmgT120I	GGNCC	2 cut(s)	235, 586
BmiI	GGNNCC	4 cut(s)	70, 133, 331, 587
BmsI	GCATC	1 cut(s)	643
BpuEI	CTTGAG	1 cut(s)	241
BsaI	GGTCTC	2 cut(s)	35, 300
BsaJI	CCNNGG	1 cut(s)	244
Bsc4I	CCNNNNNNNGG	3 cut(s)	182, 339, 595
Bse1I	ACTGG	2 cut(s)	208, 532
Bse3DI	GCAATG	1 cut(s)	567
BseDI	CCNNGG	1 cut(s)	244
BseLI	CCNNNNNNNGG	3 cut(s)	182, 339, 595
BseMI	GCAATG	1 cut(s)	567
BseMII	CTCAG	1 cut(s)	381
BseNI	ACTGG	2 cut(s)	208, 532
BseXI	GCAGC	3 cut(s)	299, 338, 635
Bsh1236I	CGCG	1 cut(s)	246
Bsh1285I	CGRYCG	1 cut(s)	349
BshFI	GGCC	2 cut(s)	207, 236
BshNI	GGYRCC	2 cut(s)	68, 131
BsiEI	CGRYCG	1 cut(s)	349
BslFI	GGGAC	2 cut(s)	457, 599
BslI	CCNNNNNNNGG	3 cut(s)	182, 339, 595
BsmAI	GTCTC	3 cut(s)	35, 259, 300
BsmFI	GGGAC	2 cut(s)	457, 599
BsnI	GGCC	2 cut(s)	207, 236
Bso31I	GGTCTC	2 cut(s)	35, 300
Bsp143I	GATC	1 cut(s)	346
BspACI	CCGC	3 cut(s)	244, 246, 310
BspANI	GGCC	2 cut(s)	207, 236
BspCNI	CTCAG	1 cut(s)	380
BspFNI	CGCG	1 cut(s)	246
BspLI	GGNNCC	4 cut(s)	70, 133, 331, 587
BspT107I	GGYRCC	2 cut(s)	68, 131
BspTNI	GGTCTC	2 cut(s)	35, 300
BsrDI	GCAATG	1 cut(s)	567
BsrI	ACTGG	2 cut(s)	208, 532
BssECI	CCNNGG	1 cut(s)	244
BssMI	GATC	1 cut(s)	346
BssSI	CACGAG	1 cut(s)	580
Bst2BI	CACGAG	1 cut(s)	580
Bst4CI	ACNGT	1 cut(s)	708
BstAPI	GCANNNNNTGC	3 cut(s)	68, 267, 276
BstC8I	GCNNGC	1 cut(s)	292
BstDEI	CTNAG	2 cut(s)	34, 367
BstDSI	CCRYGG	1 cut(s)	244
BstFNI	CGCG	1 cut(s)	246
BstKTI	GATC	1 cut(s)	349
BstMAI	GTCTC	3 cut(s)	35, 259, 300
BstMBI	GATC	1 cut(s)	346
BstMCI	CGRYCG	1 cut(s)	349
BstMWI	GCNNNNNNNGC	4 cut(s)	68, 267, 276, 503
BstUI	CGCG	1 cut(s)	246
BstV1I	GCAGC	3 cut(s)	299, 338, 635
BstXI	CCANNNNNNTGG	1 cut(s)	227
BsuI	GTATCC	1 cut(s)	720
BsuRI	GGCC	2 cut(s)	207, 236
BtgI	CCRYGG	1 cut(s)	244
BtgZI	GCGATG	1 cut(s)	666
BtsI	GCAGTG	1 cut(s)	111
BtsIMutI	CAGTG	1 cut(s)	111
Cac8I	GCNNGC	1 cut(s)	292
Cfr13I	GGNCC	2 cut(s)	235, 586
Cfr42I	CCGCGG	1 cut(s)	247
CseI	GACGC	1 cut(s)	296
Csp6I	GTAC	3 cut(s)	343, 364, 536
CviQI	GTAC	3 cut(s)	343, 364, 536
DdeI	CTNAG	2 cut(s)	34, 367
DpnI	GATC	1 cut(s)	348
DpnII	GATC	1 cut(s)	346
DraI	TTTAAA	1 cut(s)	360
EaeI	YGGCCR	1 cut(s)	205
Eco31I	GGTCTC	2 cut(s)	35, 300
Eco47I	GGWCC	1 cut(s)	586
Eco57I	CTGAAG	1 cut(s)	522
EcoO109I	RGGNCCY	1 cut(s)	586
FaiI	YATR	9 cut(s)	127, 129, 163, 335, 414, 416, 522, 564, 702
FaqI	GGGAC	2 cut(s)	457, 599
FauNDI	CATATG	1 cut(s)	127
Fnu4HI	GCNGC	4 cut(s)	244, 313, 352, 649
Fsp4HI	GCNGC	4 cut(s)	244, 313, 352, 649
GluI	GCNGC	4 cut(s)	244, 313, 352, 649
HaeIII	GGCC	2 cut(s)	207, 236
HgaI	GACGC	1 cut(s)	296
HincII	GTYRAC	1 cut(s)	286
HindII	GTYRAC	1 cut(s)	286
HindIII	AAGCTT	2 cut(s)	495, 515
HphI	GGTGA	2 cut(s)	260, 542
Hpy166II	GTNNAC	1 cut(s)	286
Hpy188I	TCNGA	2 cut(s)	370, 502
Hpy188III	TCNNGA	2 cut(s)	305, 617
Hpy8I	GTNNAC	1 cut(s)	286
HpyAV	CCTTC	1 cut(s)	189
HpyCH4III	ACNGT	1 cut(s)	708
HpyCH4IV	ACGT	1 cut(s)	423
HpyCH4V	TGCA	4 cut(s)	62, 270, 579, 656
HpyF10VI	GCNNNNNNNGC	4 cut(s)	68, 267, 276, 503
HpyF3I	CTNAG	2 cut(s)	34, 367
HpySE526I	ACGT	1 cut(s)	423
KspI	CCGCGG	1 cut(s)	247
Kzo9I	GATC	1 cut(s)	346
LmnI	GCTCC	1 cut(s)	329
LpnPI	CCDG	8 cut(s)	11, 114, 168, 189, 385, 391, 513, 579
Lsp1109I	GCAGC	3 cut(s)	299, 338, 635
LweI	GCATC	1 cut(s)	643
MaeII	ACGT	1 cut(s)	423
MalI	GATC	1 cut(s)	348
MboI	GATC	1 cut(s)	346
MlsI	TGGCCA	1 cut(s)	207
MluCI	AATT	2 cut(s)	336, 390
MluNI	TGGCCA	1 cut(s)	207
MnlI	CCTC	7 cut(s)	33, 82, 186, 526, 576, 599, 656
Mox20I	TGGCCA	1 cut(s)	207
MroXI	GAANNNNTTC	1 cut(s)	407
MscI	TGGCCA	1 cut(s)	207
MseI	TTAA	5 cut(s)	81, 359, 465, 476, 727
Msp20I	TGGCCA	1 cut(s)	207
MspA1I	CMGCKG	2 cut(s)	246, 312
MvnI	CGCG	1 cut(s)	246
MwoI	GCNNNNNNNGC	4 cut(s)	68, 267, 276, 503
NdeI	CATATG	1 cut(s)	127
NdeII	GATC	1 cut(s)	346
NlaIV	GGNNCC	4 cut(s)	70, 133, 331, 587
PcsI	WCGNNNNNNNCGW	1 cut(s)	667
PdmI	GAANNNNTTC	1 cut(s)	407
PflMI	CCANNNNNTGG	1 cut(s)	339
PkrI	GCNGC	4 cut(s)	245, 314, 353, 650
Ple19I	CGATCG	1 cut(s)	349
PpuMI	RGGWCCY	1 cut(s)	586
Psp5II	RGGWCCY	1 cut(s)	586
PspN4I	GGNNCC	4 cut(s)	70, 133, 331, 587
PspPI	GGNCC	2 cut(s)	235, 586
PspPPI	RGGWCCY	1 cut(s)	586
PvuI	CGATCG	1 cut(s)	349
RsaI	GTAC	3 cut(s)	344, 365, 537
RsaNI	GTAC	3 cut(s)	343, 364, 536
SacII	CCGCGG	1 cut(s)	247
SaqAI	TTAA	5 cut(s)	81, 359, 465, 476, 727
SatI	GCNGC	4 cut(s)	244, 313, 352, 649
Sau3AI	GATC	1 cut(s)	346
Sau96I	GGNCC	2 cut(s)	235, 586
ScaI	AGTACT	1 cut(s)	365
SfaNI	GCATC	1 cut(s)	643
Sfr303I	CCGCGG	1 cut(s)	247
SgrBI	CCGCGG	1 cut(s)	247
SinI	GGWCC	1 cut(s)	586
SmlI	CTYRAG	1 cut(s)	256
SmoI	CTYRAG	1 cut(s)	256
Sse9I	AATT	2 cut(s)	336, 390
SsiI	CCGC	3 cut(s)	244, 246, 310
TaaI	ACNGT	1 cut(s)	708
TaiI	ACGT	1 cut(s)	426
TaqI	TCGA	2 cut(s)	304, 543
TasI	AATT	2 cut(s)	336, 390
TatI	WGTACW	1 cut(s)	363
TauI	GCSGC	1 cut(s)	246
Tru1I	TTAA	5 cut(s)	81, 359, 465, 476, 727
Tru9I	TTAA	5 cut(s)	81, 359, 465, 476, 727
TscAI	CASTG	1 cut(s)	118
TseI	GCWGC	3 cut(s)	312, 351, 648
TspDTI	ATGAA	2 cut(s)	507, 717
TspRI	CASTG	1 cut(s)	118
Van91I	CCANNNNNTGG	1 cut(s)	339
VpaK11BI	GGWCC	1 cut(s)	586
XcmI	CCANNNNNNNNNTGG	1 cut(s)	62
XmnI	GAANNNNTTC	1 cut(s)	407
ZrmI	AGTACT	1 cut(s)	365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.