Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0000899

Physical Location & Seq

Genomic Coordinates Forward (+)

72929652 .. 72930380

Gene Structure 729 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021206

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGGTGGGCTCCAAATCAATCCCTCTTGGTTTCTTACTGTTCTGTCTTTTCCACCATGCCGCCATCGGTGCTTCCCCACTTTACCATTTCTGTTTCAGCAAGCAAAACTACACTGCCAATAGCCCGTACCAGGCTAACTTGAATCAGTTGCTTGATCTTCTATACACCAAAGTCCCTCCTACTGGATTTGGATCTGGTTCAACAGGTCAAGACCCGGACCAAGTGAACGGGCTGGCGCTATGCCGTGGTGATGTTTCAAGCAACAATTGCAAGACTTGTGTCGTTAACGCAAGCAAGAAGCTCGGTGAGCGCTGCCCAGATAGAAAAGGAGCCATAATATGGTACGATAATTGCATGTTAAAGTACTCAGATGTGGATTTCATTGGCCAAATTGATAACGCAAACAAGATCTATATGTGGAATGCTCAAGAAGTAGATAATCCTACACTATTCAATGAGAAGGTTAAAGAATTATTAAATGGATTATCTACTACAGCCTCTTCTTCTAATCCAAAGCTTTATGCTACTGGCGAGGTGGAGCTCGATAAATCAACCAAGCTATATGGTCTAGTTCAATGCACGAGGGATCTATCTGAAACGGATTGCAAGAAGTGTCTTGATGGAGCAATAAGCGAACTGCCAGACTGTCGTGATGCAAAGCAAGGTGGGCGGGTTGTGGGCGGGAGTTGTAACTTTAGATACGAAATTTACCCTTTCGTTGATTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0030312 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071944 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1204 Stress-antifung

Protein Analysis

243

Amino Acids

26.58

Weight (kDa)

5.93

Isoelectric Point (pI)

23.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stress-antifung	PF01657	31 - 124	1.1e-26	Salt stress response/antifungal
Stress-antifung	PF01657	146 - 236	3.7e-14	Salt stress response/antifungal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000899)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22060
fragaria_vesca	FvH4_2g10161
malus_domestica	MD05G1056000.v1.1 MD05G1056300.v1.1 MD10G1064400.v1.1
prunus_persica	Prupe.3G109800_v2.0.a1 Prupe.3G110100_v2.0.a1 Prupe.3G110200_v2.0.a1 Prupe.3G110300_v2.0.a1 Prupe.8G086600_v2.0.a1
pyrus_communis	pycom05g04770 pycom05g04780
rosa_chinensis	RchiOBHm_Chr1g0328011 RchiOBHm_Chr1g0328031 RchiOBHm_Chr2g0158681 RchiOBHm_Chr2g0160231 RchiOBHm_Chr2g0160251
rosa_laevigata	RLG00000014015 RLG00000021106 RLG00000021206 RLG00000021207 RLG00000029943 RLG00000029944 RLG00000029946 RLG00000029948
rosa_multiflora	Rmu_co8269469.1_g000001 Rmu_co8408147.1_g000001 Rmu_sc0000403.1_g000003 Rmu_sc0008269.1_g000008 Rmu_sc0020806.1_g000002
rosa_roxburghii	Rroxscaffold_2G00091070 Rroxscaffold_2G00091110 Rroxscaffold_4G00321960 Rroxscaffold_4G00321970 Rroxscaffold_4G00321980 Rroxscaffold_4G00322000 Rroxscaffold_4G00322030 Rroxscaffold_7G00200860 Rroxscaffold_7G00200940
rosa_rugosa	Rorug01G0073200 Rorug01G0073200 Rorug01G0073300 Rorug02G0471400 Rorug02G0472000 Rorug02G0482400 Rorug02G0482400
rosa_samantha	Rh1BG071900 Rh1BG072100 Rh2AG537200 Rh2AG547800 Rh2BG550400 Rh2BG561200 Rh2BG561400 Rh2CG520900 Rh2CG531800 Rh2CG532100 Rh6AG153200 Rh6CG149000
rosa_wichuraiana	Rw0G019500 Rw1G006970 Rw1G006980 Rw1G006990 Rw2G044480 Rw2G045320 Rw6G013180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	339
AciI	CCGC	3 cut(s)	60, 670, 681
AclWI	GGATC	2 cut(s)	199, 594
AcoI	YGGCCR	1 cut(s)	385
AcsI	RAATTY	1 cut(s)	705
AfaI	GTAC	3 cut(s)	128, 344, 365
AfeI	AGCGCT	1 cut(s)	311
AfiI	CCNNNNNNNGG	3 cut(s)	130, 182, 339
AgsI	TTSAA	5 cut(s)	142, 201, 258, 454, 575
AjnI	CCWGG	1 cut(s)	129
AluBI	AGCT	4 cut(s)	301, 517, 541, 559
AluI	AGCT	4 cut(s)	301, 517, 541, 559
Alw21I	GWGCWC	1 cut(s)	543
AlwI	GGATC	2 cut(s)	199, 594
Aor51HI	AGCGCT	1 cut(s)	311
AoxI	GGCC	1 cut(s)	385
ApeKI	GCWGC	1 cut(s)	312
ApoI	RAATTY	1 cut(s)	705
AspLEI	GCGC	2 cut(s)	238, 312
AspS9I	GGNCC	1 cut(s)	217
AsuC2I	CCSGG	1 cut(s)	215
AsuHPI	GGTGA	2 cut(s)	260, 317
AvaII	GGWCC	1 cut(s)	217
BalI	TGGCCA	1 cut(s)	387
BanII	GRGCYC	2 cut(s)	11, 543
BauI	CACGAG	1 cut(s)	580
Bbv12I	GWGCWC	1 cut(s)	543
BbvI	GCAGC	1 cut(s)	299
BccI	CCATC	2 cut(s)	71, 614
BceAI	ACGGC	1 cut(s)	228
BcgI	CGANNNNNNTGC	2 cut(s)	283, 317
BciT130I	CCWGG	1 cut(s)	131
BcnI	CCSGG	1 cut(s)	215
BfaI	CTAG	1 cut(s)	569
BfmI	CTRYAG	1 cut(s)	492
BfoI	RGCGCY	2 cut(s)	239, 313
BglII	AGATCT	1 cut(s)	408
BisI	GCNGC	2 cut(s)	60, 313
BlsI	GCNGC	2 cut(s)	61, 314
BmcAI	AGTACT	1 cut(s)	365
Bme1390I	CCNGG	2 cut(s)	131, 215
Bme18I	GGWCC	1 cut(s)	217
BmgT120I	GGNCC	1 cut(s)	217
BmiI	GGNNCC	2 cut(s)	10, 331
BmrFI	CCNGG	2 cut(s)	131, 215
BmsI	GCATC	1 cut(s)	643
BoxI	GACNNNNGTC	1 cut(s)	278
BpuEI	CTTGAG	1 cut(s)	411
BpuMI	CCSGG	1 cut(s)	215
BsaBI	GATNNNNATC	1 cut(s)	190
BsaJI	CCNNGG	1 cut(s)	244
Bsc4I	CCNNNNNNNGG	3 cut(s)	130, 182, 339
Bse1I	ACTGG	2 cut(s)	187, 532
Bse8I	GATNNNNATC	1 cut(s)	190
BseBI	CCWGG	1 cut(s)	131
BseDI	CCNNGG	1 cut(s)	244
BseJI	GATNNNNATC	1 cut(s)	190
BseLI	CCNNNNNNNGG	3 cut(s)	130, 182, 339
BseMII	CTCAG	1 cut(s)	381
BseNI	ACTGG	2 cut(s)	187, 532
BseXI	GCAGC	1 cut(s)	299
BshFI	GGCC	1 cut(s)	387
BsiHKAI	GWGCWC	1 cut(s)	543
BsiSI	CCGG	1 cut(s)	215
BslFI	GGGAC	1 cut(s)	158
BslI	CCNNNNNNNGG	3 cut(s)	130, 182, 339
BsmFI	GGGAC	1 cut(s)	158
BsmI	GAATGC	1 cut(s)	427
BsnI	GGCC	1 cut(s)	387
Bsp1286I	GDGCHC	2 cut(s)	11, 543
Bsp143I	GATC	4 cut(s)	154, 191, 408, 586
BspACI	CCGC	3 cut(s)	60, 670, 681
BspANI	GGCC	1 cut(s)	387
BspCNI	CTCAG	1 cut(s)	380
BspLI	GGNNCC	2 cut(s)	10, 331
BspPI	GGATC	2 cut(s)	199, 594
BsrI	ACTGG	2 cut(s)	187, 532
BssECI	CCNNGG	1 cut(s)	244
BssMI	GATC	4 cut(s)	154, 191, 408, 586
BssSI	CACGAG	1 cut(s)	580
Bst2BI	CACGAG	1 cut(s)	580
Bst2UI	CCWGG	1 cut(s)	131
Bst4CI	ACNGT	2 cut(s)	39, 647
Bst6I	CTCTTC	1 cut(s)	505
BstAPI	GCANNNNNTGC	1 cut(s)	267
BstC8I	GCNNGC	3 cut(s)	101, 234, 292
BstDEI	CTNAG	1 cut(s)	367
BstDSI	CCRYGG	1 cut(s)	244
BstH2I	RGCGCY	2 cut(s)	239, 313
BstHHI	GCGC	2 cut(s)	238, 312
BstKTI	GATC	4 cut(s)	157, 194, 411, 589
BstMBI	GATC	4 cut(s)	154, 191, 408, 586
BstMWI	GCNNNNNNNGC	4 cut(s)	68, 267, 307, 667
BstNI	CCWGG	1 cut(s)	131
BstNSI	RCATGY	1 cut(s)	358
BstPAI	GACNNNNGTC	1 cut(s)	278
BstSCI	CCNGG	2 cut(s)	129, 213
BstSFI	CTRYAG	1 cut(s)	492
BstV1I	GCAGC	1 cut(s)	299
BstX2I	RGATCY	3 cut(s)	191, 408, 586
BstYI	RGATCY	3 cut(s)	191, 408, 586
BsuRI	GGCC	1 cut(s)	387
BtgI	CCRYGG	1 cut(s)	244
BtsI	GCAGTG	1 cut(s)	111
BtsIMutI	CAGTG	1 cut(s)	111
Cac8I	GCNNGC	3 cut(s)	101, 234, 292
CfoI	GCGC	2 cut(s)	238, 312
Cfr13I	GGNCC	1 cut(s)	217
Csp6I	GTAC	3 cut(s)	127, 343, 364
CviAII	CATG	2 cut(s)	56, 355
CviQI	GTAC	3 cut(s)	127, 343, 364
DdeI	CTNAG	1 cut(s)	367
DpnI	GATC	4 cut(s)	156, 193, 410, 588
DpnII	GATC	4 cut(s)	154, 191, 408, 586
EaeI	YGGCCR	1 cut(s)	385
Eam1104I	CTCTTC	1 cut(s)	505
EarI	CTCTTC	1 cut(s)	505
Ecl136II	GAGCTC	1 cut(s)	541
Eco24I	GRGCYC	2 cut(s)	11, 543
Eco47I	GGWCC	1 cut(s)	217
Eco47III	AGCGCT	1 cut(s)	311
Eco53kI	GAGCTC	1 cut(s)	541
EcoICRI	GAGCTC	1 cut(s)	541
EcoRII	CCWGG	1 cut(s)	129
EcoT38I	GRGCYC	2 cut(s)	11, 543
FaeI	CATG	2 cut(s)	59, 358
FaqI	GGGAC	1 cut(s)	158
FatI	CATG	2 cut(s)	55, 354
FauI	CCCGC	2 cut(s)	663, 674
Fnu4HI	GCNGC	2 cut(s)	60, 313
FriOI	GRGCYC	2 cut(s)	11, 543
Fsp4HI	GCNGC	2 cut(s)	60, 313
FspBI	CTAG	1 cut(s)	569
GlaI	GCGC	2 cut(s)	237, 311
GluI	GCNGC	2 cut(s)	60, 313
HaeII	RGCGCY	2 cut(s)	239, 313
HaeIII	GGCC	1 cut(s)	387
HapII	CCGG	1 cut(s)	215
HhaI	GCGC	2 cut(s)	238, 312
Hin1II	CATG	2 cut(s)	59, 358
Hin6I	GCGC	2 cut(s)	236, 310
HinP1I	GCGC	2 cut(s)	236, 310
HincII	GTYRAC	1 cut(s)	286
HindII	GTYRAC	1 cut(s)	286
HindIII	AAGCTT	1 cut(s)	515
HinfI	GANTC	2 cut(s)	142, 722
HpaI	GTTAAC	1 cut(s)	286
HpaII	CCGG	1 cut(s)	215
HphI	GGTGA	2 cut(s)	260, 317
Hpy166II	GTNNAC	2 cut(s)	226, 286
Hpy188I	TCNGA	2 cut(s)	370, 595
Hpy188III	TCNNGA	4 cut(s)	209, 428, 617, 650
Hpy8I	GTNNAC	2 cut(s)	226, 286
HpyAV	CCTTC	1 cut(s)	454
HpyCH4III	ACNGT	2 cut(s)	39, 647
HpyCH4V	TGCA	5 cut(s)	270, 354, 579, 606, 656
HpyF10VI	GCNNNNNNNGC	4 cut(s)	68, 267, 307, 667
HpyF3I	CTNAG	1 cut(s)	367
Hsp92II	CATG	2 cut(s)	59, 358
HspAI	GCGC	2 cut(s)	236, 310
KspAI	GTTAAC	1 cut(s)	286
Kzo9I	GATC	4 cut(s)	154, 191, 408, 586
LmnI	GCTCC	4 cut(s)	14, 329, 538, 623
Lsp1109I	GCAGC	1 cut(s)	299
LweI	GCATC	1 cut(s)	643
MaeI	CTAG	1 cut(s)	569
MaeIII	GTNAC	1 cut(s)	689
MalI	GATC	4 cut(s)	156, 193, 410, 588
MboI	GATC	4 cut(s)	154, 191, 408, 586
MboII	GAAGA	3 cut(s)	149, 492, 495
MfeI	CAATTG	1 cut(s)	265
MflI	RGATCY	3 cut(s)	191, 408, 586
MhlI	GDGCHC	2 cut(s)	11, 543
MlsI	TGGCCA	1 cut(s)	387
MluCI	AATT	5 cut(s)	265, 349, 390, 470, 705
MluNI	TGGCCA	1 cut(s)	387
MnlI	CCTC	5 cut(s)	33, 186, 508, 526, 576
Mox20I	TGGCCA	1 cut(s)	387
MscI	TGGCCA	1 cut(s)	387
MseI	TTAA	5 cut(s)	285, 359, 465, 476, 727
Msp20I	TGGCCA	1 cut(s)	387
MspI	CCGG	1 cut(s)	215
MspR9I	CCNGG	2 cut(s)	131, 215
MunI	CAATTG	1 cut(s)	265
Mva1269I	GAATGC	1 cut(s)	427
MvaI	CCWGG	1 cut(s)	131
MwoI	GCNNNNNNNGC	4 cut(s)	68, 267, 307, 667
NciI	CCSGG	1 cut(s)	215
NdeII	GATC	4 cut(s)	154, 191, 408, 586
NlaIII	CATG	2 cut(s)	59, 358
NlaIV	GGNNCC	2 cut(s)	10, 331
NspI	RCATGY	1 cut(s)	358
PctI	GAATGC	1 cut(s)	427
PfeI	GAWTC	2 cut(s)	142, 722
PflMI	CCANNNNNTGG	1 cut(s)	339
PkrI	GCNGC	2 cut(s)	61, 314
PshAI	GACNNNNGTC	1 cut(s)	278
Psp124BI	GAGCTC	1 cut(s)	543
Psp6I	CCWGG	1 cut(s)	129
PspGI	CCWGG	1 cut(s)	129
PspN4I	GGNNCC	2 cut(s)	10, 331
PspPI	GGNCC	1 cut(s)	217
PsuI	RGATCY	3 cut(s)	191, 408, 586
RsaI	GTAC	3 cut(s)	128, 344, 365
RsaNI	GTAC	3 cut(s)	127, 343, 364
SacI	GAGCTC	1 cut(s)	543
SaqAI	TTAA	5 cut(s)	285, 359, 465, 476, 727
SatI	GCNGC	2 cut(s)	60, 313
Sau3AI	GATC	4 cut(s)	154, 191, 408, 586
Sau96I	GGNCC	1 cut(s)	217
ScaI	AGTACT	1 cut(s)	365
ScrFI	CCNGG	2 cut(s)	131, 215
SduI	GDGCHC	2 cut(s)	11, 543
SetI	ASST	8 cut(s)	208, 303, 465, 519, 537, 543, 561, 667
SfaNI	GCATC	1 cut(s)	643
SfcI	CTRYAG	1 cut(s)	492
SinI	GGWCC	1 cut(s)	217
SmlI	CTYRAG	1 cut(s)	426
SmoI	CTYRAG	1 cut(s)	426
Sse9I	AATT	5 cut(s)	265, 349, 390, 470, 705
SsiI	CCGC	3 cut(s)	60, 670, 681
SspMI	CTAG	1 cut(s)	569
SstI	GAGCTC	1 cut(s)	543
StyD4I	CCNGG	2 cut(s)	129, 213
TaaI	ACNGT	2 cut(s)	39, 647
TaqI	TCGA	1 cut(s)	543
TasI	AATT	5 cut(s)	265, 349, 390, 470, 705
TatI	WGTACW	1 cut(s)	363
TauI	GCSGC	1 cut(s)	62
TfiI	GAWTC	2 cut(s)	142, 722
Tru1I	TTAA	5 cut(s)	285, 359, 465, 476, 727
Tru9I	TTAA	5 cut(s)	285, 359, 465, 476, 727
TscAI	CASTG	1 cut(s)	118
TseI	GCWGC	1 cut(s)	312
TspDTI	ATGAA	1 cut(s)	370
TspGWI	ACGGA	1 cut(s)	614
TspRI	CASTG	1 cut(s)	118
Van91I	CCANNNNNTGG	1 cut(s)	339
VpaK11BI	GGWCC	1 cut(s)	217
XapI	RAATTY	1 cut(s)	705
XceI	RCATGY	1 cut(s)	358
XspI	CTAG	1 cut(s)	569
ZrmI	AGTACT	1 cut(s)	365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.