Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008269.1

Orthogroup ID

OG0000899

Physical Location & Seq

Genomic Coordinates Reverse (-)

19098 .. 19790

Gene Structure 693 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008269.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ctgttctgtcttttccaccatgttgccattggtgcttccccgctttaccatttctgtttcagcaaacagaactacactgccaatagcccatacgaggccaacttgaatcagttgctcgatcttctatacaccaaagtccctcctactggatttggatctggttcaacaggtcaagacccgaaccaagtgaacgggctggcgctctgccgtggtgatgtttcaagcaacaattgcaagacttgtgtcgtcgacgcaagcaagaagctcggtgagcgctgcccagatagaaaaggagccataatatggtacgataattgcatgttaaagtactcagatgtgaatttcgttggccaaattgataacgcaaacaggttctatatgtggaatgttcaagaagtagataaccctacacctttcaatgagaaggttaaagaattattaagtggattatctactacagcttcttcttctaatccaaagctctatgctactggcgaggtggagctcgataaatcaaccaagctatatggtttagttcaatgcacgagggatctatctgaaccggattgcaagaagtgtcttgatggcgcaataagcgaactaccaaactgttgtgatgcaaagcaaggtgggcgggttgtgggcgggagttgtaactttagatacgaaatttacccttttgttgattcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0030312 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071944 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1204 Stress-antifung

Protein Analysis

230

Amino Acids

25.35

Weight (kDa)

5.65

Isoelectric Point (pI)

27.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000899)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22060
fragaria_vesca	FvH4_2g10161
malus_domestica	MD05G1056000.v1.1 MD05G1056300.v1.1 MD10G1064400.v1.1
prunus_persica	Prupe.3G109800_v2.0.a1 Prupe.3G110100_v2.0.a1 Prupe.3G110200_v2.0.a1 Prupe.3G110300_v2.0.a1 Prupe.8G086600_v2.0.a1
pyrus_communis	pycom05g04770 pycom05g04780
rosa_chinensis	RchiOBHm_Chr1g0328011 RchiOBHm_Chr1g0328031 RchiOBHm_Chr2g0158681 RchiOBHm_Chr2g0160231 RchiOBHm_Chr2g0160251
rosa_laevigata	RLG00000014015 RLG00000021106 RLG00000021206 RLG00000021207 RLG00000029943 RLG00000029944 RLG00000029946 RLG00000029948
rosa_multiflora	Rmu_co8269469.1_g000001 Rmu_co8408147.1_g000001 Rmu_sc0000403.1_g000003 Rmu_sc0008269.1_g000008 Rmu_sc0020806.1_g000002
rosa_roxburghii	Rroxscaffold_2G00091070 Rroxscaffold_2G00091110 Rroxscaffold_4G00321960 Rroxscaffold_4G00321970 Rroxscaffold_4G00321980 Rroxscaffold_4G00322000 Rroxscaffold_4G00322030 Rroxscaffold_7G00200860 Rroxscaffold_7G00200940
rosa_rugosa	Rorug01G0073200 Rorug01G0073200 Rorug01G0073300 Rorug02G0471400 Rorug02G0472000 Rorug02G0482400 Rorug02G0482400
rosa_samantha	Rh1BG071900 Rh1BG072100 Rh2AG537200 Rh2AG547800 Rh2BG550400 Rh2BG561200 Rh2BG561400 Rh2CG520900 Rh2CG531800 Rh2CG532100 Rh6AG153200 Rh6CG149000
rosa_wichuraiana	Rw0G019500 Rw1G006970 Rw1G006980 Rw1G006990 Rw2G044480 Rw2G045320 Rw6G013180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	303
AccI	GTMKAC	1 cut(s)	249
AciI	CCGC	3 cut(s)	41, 634, 645
AclWI	GGATC	2 cut(s)	163, 558
AcoI	YGGCCR	1 cut(s)	349
AcsI	RAATTY	2 cut(s)	340, 669
AfaI	GTAC	2 cut(s)	308, 329
AfeI	AGCGCT	1 cut(s)	275
AfiI	CCNNNNNNNGG	3 cut(s)	94, 146, 303
AgsI	TTSAA	6 cut(s)	106, 165, 222, 392, 418, 539
AluBI	AGCT	5 cut(s)	265, 461, 481, 505, 523
AluI	AGCT	5 cut(s)	265, 461, 481, 505, 523
Alw21I	GWGCWC	1 cut(s)	507
AlwI	GGATC	2 cut(s)	163, 558
Aor51HI	AGCGCT	1 cut(s)	275
AoxI	GGCC	2 cut(s)	96, 349
ApeKI	GCWGC	1 cut(s)	276
ApoI	RAATTY	2 cut(s)	340, 669
AspLEI	GCGC	3 cut(s)	202, 276, 590
AsuHPI	GGTGA	2 cut(s)	224, 281
BalI	TGGCCA	1 cut(s)	351
BanII	GRGCYC	1 cut(s)	507
BauI	CACGAG	1 cut(s)	544
Bbv12I	GWGCWC	1 cut(s)	507
BbvI	GCAGC	1 cut(s)	263
BccI	CCATC	1 cut(s)	578
BceAI	ACGGC	1 cut(s)	192
BcgI	CGANNNNNNTGC	2 cut(s)	247, 281
BfmI	CTRYAG	1 cut(s)	456
BfoI	RGCGCY	2 cut(s)	203, 277
BisI	GCNGC	1 cut(s)	277
BlsI	GCNGC	1 cut(s)	278
BmcAI	AGTACT	1 cut(s)	329
BmiI	GGNNCC	1 cut(s)	295
BmsI	GCATC	1 cut(s)	607
BoxI	GACNNNNGTC	1 cut(s)	242
BsaBI	GATNNNNATC	1 cut(s)	154
BsaJI	CCNNGG	1 cut(s)	208
BsaWI	WCCGGW	1 cut(s)	562
Bsc4I	CCNNNNNNNGG	3 cut(s)	94, 146, 303
Bse1I	ACTGG	2 cut(s)	151, 496
Bse8I	GATNNNNATC	1 cut(s)	154
BseDI	CCNNGG	1 cut(s)	208
BseJI	GATNNNNATC	1 cut(s)	154
BseLI	CCNNNNNNNGG	3 cut(s)	94, 146, 303
BseMII	CTCAG	1 cut(s)	345
BseNI	ACTGG	2 cut(s)	151, 496
BseXI	GCAGC	1 cut(s)	263
BshFI	GGCC	2 cut(s)	98, 351
BsiHKAI	GWGCWC	1 cut(s)	507
BsiSI	CCGG	1 cut(s)	563
BslFI	GGGAC	1 cut(s)	122
BslI	CCNNNNNNNGG	3 cut(s)	94, 146, 303
BsmFI	GGGAC	1 cut(s)	122
BsnI	GGCC	2 cut(s)	98, 351
Bsp1286I	GDGCHC	1 cut(s)	507
Bsp143I	GATC	3 cut(s)	118, 155, 550
BspACI	CCGC	3 cut(s)	41, 634, 645
BspANI	GGCC	2 cut(s)	98, 351
BspCNI	CTCAG	1 cut(s)	344
BspLI	GGNNCC	1 cut(s)	295
BspPI	GGATC	2 cut(s)	163, 558
BsrI	ACTGG	2 cut(s)	151, 496
BssECI	CCNNGG	1 cut(s)	208
BssMI	GATC	3 cut(s)	118, 155, 550
BssSI	CACGAG	1 cut(s)	544
Bst2BI	CACGAG	1 cut(s)	544
Bst4CI	ACNGT	1 cut(s)	611
BstAPI	GCANNNNNTGC	1 cut(s)	231
BstC8I	GCNNGC	2 cut(s)	198, 256
BstDEI	CTNAG	1 cut(s)	331
BstDSI	CCRYGG	1 cut(s)	208
BstH2I	RGCGCY	2 cut(s)	203, 277
BstHHI	GCGC	3 cut(s)	202, 276, 590
BstKTI	GATC	3 cut(s)	121, 158, 553
BstMBI	GATC	3 cut(s)	118, 155, 550
BstMWI	GCNNNNNNNGC	5 cut(s)	32, 231, 271, 594, 631
BstNSI	RCATGY	1 cut(s)	322
BstPAI	GACNNNNGTC	1 cut(s)	242
BstSFI	CTRYAG	1 cut(s)	456
BstV1I	GCAGC	1 cut(s)	263
BstX2I	RGATCY	2 cut(s)	155, 550
BstYI	RGATCY	2 cut(s)	155, 550
BsuRI	GGCC	2 cut(s)	98, 351
BtgI	CCRYGG	1 cut(s)	208
BtsI	GCAGTG	1 cut(s)	75
BtsIMutI	CAGTG	1 cut(s)	75
Cac8I	GCNNGC	2 cut(s)	198, 256
CfoI	GCGC	3 cut(s)	202, 276, 590
CseI	GACGC	1 cut(s)	260
Csp6I	GTAC	2 cut(s)	307, 328
CviAII	CATG	2 cut(s)	20, 319
CviQI	GTAC	2 cut(s)	307, 328
DdeI	CTNAG	1 cut(s)	331
DpnI	GATC	3 cut(s)	120, 157, 552
DpnII	GATC	3 cut(s)	118, 155, 550
EaeI	YGGCCR	1 cut(s)	349
Ecl136II	GAGCTC	1 cut(s)	505
Eco24I	GRGCYC	1 cut(s)	507
Eco47III	AGCGCT	1 cut(s)	275
Eco53kI	GAGCTC	1 cut(s)	505
EcoICRI	GAGCTC	1 cut(s)	505
EcoT38I	GRGCYC	1 cut(s)	507
FaeI	CATG	2 cut(s)	23, 322
FaqI	GGGAC	1 cut(s)	122
FatI	CATG	2 cut(s)	19, 318
FauI	CCCGC	3 cut(s)	48, 627, 638
FblI	GTMKAC	1 cut(s)	249
Fnu4HI	GCNGC	1 cut(s)	277
FriOI	GRGCYC	1 cut(s)	507
Fsp4HI	GCNGC	1 cut(s)	277
GlaI	GCGC	3 cut(s)	201, 275, 589
GluI	GCNGC	1 cut(s)	277
HaeII	RGCGCY	2 cut(s)	203, 277
HaeIII	GGCC	2 cut(s)	98, 351
HapII	CCGG	1 cut(s)	563
HgaI	GACGC	1 cut(s)	260
HhaI	GCGC	3 cut(s)	202, 276, 590
Hin1II	CATG	2 cut(s)	23, 322
Hin6I	GCGC	3 cut(s)	200, 274, 588
HinP1I	GCGC	3 cut(s)	200, 274, 588
HincII	GTYRAC	1 cut(s)	250
HindII	GTYRAC	1 cut(s)	250
HinfI	GANTC	2 cut(s)	106, 686
HpaII	CCGG	1 cut(s)	563
HphI	GGTGA	2 cut(s)	224, 281
Hpy166II	GTNNAC	2 cut(s)	190, 250
Hpy188I	TCNGA	2 cut(s)	334, 559
Hpy188III	TCNNGA	3 cut(s)	173, 392, 581
Hpy8I	GTNNAC	2 cut(s)	190, 250
Hpy99I	CGWCG	2 cut(s)	251, 254
HpyAV	CCTTC	1 cut(s)	418
HpyCH4III	ACNGT	1 cut(s)	611
HpyCH4V	TGCA	5 cut(s)	234, 318, 543, 570, 620
HpyF10VI	GCNNNNNNNGC	5 cut(s)	32, 231, 271, 594, 631
HpyF3I	CTNAG	1 cut(s)	331
Hsp92II	CATG	2 cut(s)	23, 322
HspAI	GCGC	3 cut(s)	200, 274, 588
Kzo9I	GATC	3 cut(s)	118, 155, 550
LmnI	GCTCC	2 cut(s)	293, 502
LpnPI	CCDG	8 cut(s)	132, 144, 153, 182, 294, 355, 477, 576
Lsp1109I	GCAGC	1 cut(s)	263
LweI	GCATC	1 cut(s)	607
MaeIII	GTNAC	1 cut(s)	653
MalI	GATC	3 cut(s)	120, 157, 552
MboI	GATC	3 cut(s)	118, 155, 550
MboII	GAAGA	3 cut(s)	113, 456, 459
MfeI	CAATTG	1 cut(s)	229
MflI	RGATCY	2 cut(s)	155, 550
MhlI	GDGCHC	1 cut(s)	507
MlsI	TGGCCA	1 cut(s)	351
MluCI	AATT	6 cut(s)	229, 313, 340, 354, 434, 669
MluNI	TGGCCA	1 cut(s)	351
MnlI	CCTC	4 cut(s)	88, 150, 490, 540
Mox20I	TGGCCA	1 cut(s)	351
MscI	TGGCCA	1 cut(s)	351
MseI	TTAA	4 cut(s)	323, 429, 440, 691
Msp20I	TGGCCA	1 cut(s)	351
MspI	CCGG	1 cut(s)	563
MunI	CAATTG	1 cut(s)	229
MwoI	GCNNNNNNNGC	5 cut(s)	32, 231, 271, 594, 631
NdeII	GATC	3 cut(s)	118, 155, 550
NlaIII	CATG	2 cut(s)	23, 322
NlaIV	GGNNCC	1 cut(s)	295
NspI	RCATGY	1 cut(s)	322
PfeI	GAWTC	2 cut(s)	106, 686
PflMI	CCANNNNNTGG	1 cut(s)	303
PkrI	GCNGC	1 cut(s)	278
PshAI	GACNNNNGTC	1 cut(s)	242
Psp124BI	GAGCTC	1 cut(s)	507
PspN4I	GGNNCC	1 cut(s)	295
PsuI	RGATCY	2 cut(s)	155, 550
RsaI	GTAC	2 cut(s)	308, 329
RsaNI	GTAC	2 cut(s)	307, 328
SacI	GAGCTC	1 cut(s)	507
SalI	GTCGAC	1 cut(s)	248
SaqAI	TTAA	4 cut(s)	323, 429, 440, 691
SatI	GCNGC	1 cut(s)	277
Sau3AI	GATC	3 cut(s)	118, 155, 550
ScaI	AGTACT	1 cut(s)	329
SduI	GDGCHC	1 cut(s)	507
SfaNI	GCATC	1 cut(s)	607
SfcI	CTRYAG	1 cut(s)	456
SgrDI	CGTCGACG	1 cut(s)	248
Sse9I	AATT	6 cut(s)	229, 313, 340, 354, 434, 669
SsiI	CCGC	3 cut(s)	41, 634, 645
SstI	GAGCTC	1 cut(s)	507
TaaI	ACNGT	1 cut(s)	611
TaqI	TCGA	3 cut(s)	117, 249, 507
TasI	AATT	6 cut(s)	229, 313, 340, 354, 434, 669
TatI	WGTACW	1 cut(s)	327
TfiI	GAWTC	2 cut(s)	106, 686
Tru1I	TTAA	4 cut(s)	323, 429, 440, 691
Tru9I	TTAA	4 cut(s)	323, 429, 440, 691
TscAI	CASTG	1 cut(s)	82
TseI	GCWGC	1 cut(s)	276
TspRI	CASTG	1 cut(s)	82
Van91I	CCANNNNNTGG	1 cut(s)	303
XapI	RAATTY	2 cut(s)	340, 669
XceI	RCATGY	1 cut(s)	322
XcmI	CCANNNNNNNNNTGG	1 cut(s)	26
XmiI	GTMKAC	1 cut(s)	249
ZrmI	AGTACT	1 cut(s)	329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.