Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0000899

Physical Location & Seq

Genomic Coordinates Forward (+)

9030530 .. 9030850

Gene Structure 321 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G110200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGTTTTATATGTGGAATGTCCAAGAAGTAGATGATCCCATGCCGTTCAATGCGAAAGTTAAGGAATTGTTAAGCGGGTTATCTACTAAAGCTTCTTCTAATCCAAAGTTTTATGCTACTGGTGAGCTAGAGCTCAGCTCATCGGAAACTCTATATGCTTTGACTCAATGCACATGGGACCTCTCTAGTTCCAATTGTAAGAAGTGTCTTGATAATGCAATAAGCGAACTACCAAATTGTTGTGATGCGAAACGAGGTGGGCGTGTTGTGGGTGGGAGTTGTAACTTTCGATATGAACTTTACCCCATTGTTGATCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0030312 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071944 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1204 Stress-antifung

Protein Analysis

107

Amino Acids

11.79

Weight (kDa)

4.82

Isoelectric Point (pI)

49.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000899)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22060
fragaria_vesca	FvH4_2g10161
malus_domestica	MD05G1056000.v1.1 MD05G1056300.v1.1 MD10G1064400.v1.1
prunus_persica	Prupe.3G109800_v2.0.a1 Prupe.3G110100_v2.0.a1 Prupe.3G110200_v2.0.a1 Prupe.3G110300_v2.0.a1 Prupe.8G086600_v2.0.a1
pyrus_communis	pycom05g04770 pycom05g04780
rosa_chinensis	RchiOBHm_Chr1g0328011 RchiOBHm_Chr1g0328031 RchiOBHm_Chr2g0158681 RchiOBHm_Chr2g0160231 RchiOBHm_Chr2g0160251
rosa_laevigata	RLG00000014015 RLG00000021106 RLG00000021206 RLG00000021207 RLG00000029943 RLG00000029944 RLG00000029946 RLG00000029948
rosa_multiflora	Rmu_co8269469.1_g000001 Rmu_co8408147.1_g000001 Rmu_sc0000403.1_g000003 Rmu_sc0008269.1_g000008 Rmu_sc0020806.1_g000002
rosa_roxburghii	Rroxscaffold_2G00091070 Rroxscaffold_2G00091110 Rroxscaffold_4G00321960 Rroxscaffold_4G00321970 Rroxscaffold_4G00321980 Rroxscaffold_4G00322000 Rroxscaffold_4G00322030 Rroxscaffold_7G00200860 Rroxscaffold_7G00200940
rosa_rugosa	Rorug01G0073200 Rorug01G0073200 Rorug01G0073300 Rorug02G0471400 Rorug02G0472000 Rorug02G0482400 Rorug02G0482400
rosa_samantha	Rh1BG071900 Rh1BG072100 Rh2AG537200 Rh2AG547800 Rh2BG550400 Rh2BG561200 Rh2BG561400 Rh2CG520900 Rh2CG531800 Rh2CG532100 Rh6AG153200 Rh6CG149000
rosa_wichuraiana	Rw0G019500 Rw1G006970 Rw1G006980 Rw1G006990 Rw2G044480 Rw2G045320 Rw6G013180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	75
AclWI	GGATC	2 cut(s)	29, 308
AgsI	TTSAA	1 cut(s)	49
AluBI	AGCT	4 cut(s)	92, 127, 133, 138
AluI	AGCT	4 cut(s)	92, 127, 133, 138
Alw21I	GWGCWC	1 cut(s)	135
AlwI	GGATC	2 cut(s)	29, 308
AspS9I	GGNCC	1 cut(s)	178
AsuHPI	GGTGA	1 cut(s)	134
AvaII	GGWCC	1 cut(s)	178
BanII	GRGCYC	1 cut(s)	135
Bbv12I	GWGCWC	1 cut(s)	135
BceAI	ACGGC	1 cut(s)	28
BfaI	CTAG	2 cut(s)	128, 186
BlpI	GCTNAGC	1 cut(s)	134
Bme18I	GGWCC	1 cut(s)	178
BmgT120I	GGNCC	1 cut(s)	178
BmiI	GGNNCC	1 cut(s)	179
BmsI	GCATC	1 cut(s)	235
BplI	GAGNNNNNCTC	2 cut(s)	122, 154
Bpu1102I	GCTNAGC	1 cut(s)	134
Bse1I	ACTGG	1 cut(s)	124
BseMII	CTCAG	1 cut(s)	148
BseNI	ACTGG	1 cut(s)	124
BsiHKAI	GWGCWC	1 cut(s)	135
BslFI	GGGAC	1 cut(s)	191
BsmFI	GGGAC	1 cut(s)	191
Bsp1286I	GDGCHC	1 cut(s)	135
Bsp143I	GATC	2 cut(s)	34, 313
Bsp1720I	GCTNAGC	1 cut(s)	134
BspACI	CCGC	1 cut(s)	75
BspCNI	CTCAG	1 cut(s)	147
BspLI	GGNNCC	1 cut(s)	179
BspPI	GGATC	2 cut(s)	29, 308
BsrI	ACTGG	1 cut(s)	124
BssMI	GATC	2 cut(s)	34, 313
BstDEI	CTNAG	1 cut(s)	134
BstKTI	GATC	2 cut(s)	37, 316
BstMBI	GATC	2 cut(s)	34, 313
Cfr13I	GGNCC	1 cut(s)	178
CviAII	CATG	2 cut(s)	40, 174
CviJI	RGCY	4 cut(s)	92, 127, 133, 138
CviKI_1	RGCY	4 cut(s)	92, 127, 133, 138
DdeI	CTNAG	1 cut(s)	134
DpnI	GATC	2 cut(s)	36, 315
DpnII	GATC	2 cut(s)	34, 313
Ecl136II	GAGCTC	1 cut(s)	133
Eco24I	GRGCYC	1 cut(s)	135
Eco47I	GGWCC	1 cut(s)	178
Eco53kI	GAGCTC	1 cut(s)	133
EcoICRI	GAGCTC	1 cut(s)	133
EcoO109I	RGGNCCY	1 cut(s)	178
EcoT38I	GRGCYC	1 cut(s)	135
FaeI	CATG	2 cut(s)	43, 177
FaiI	YATR	8 cut(s)	9, 11, 41, 114, 154, 156, 175, 294
FaqI	GGGAC	1 cut(s)	191
FatI	CATG	2 cut(s)	39, 173
FauI	CCCGC	1 cut(s)	68
FriOI	GRGCYC	1 cut(s)	135
FspBI	CTAG	2 cut(s)	128, 186
Hin1II	CATG	2 cut(s)	43, 177
HindIII	AAGCTT	1 cut(s)	90
HinfI	GANTC	1 cut(s)	163
HphI	GGTGA	1 cut(s)	134
Hpy188I	TCNGA	1 cut(s)	145
Hpy188III	TCNNGA	1 cut(s)	209
HpyCH4V	TGCA	2 cut(s)	171, 218
HpyF3I	CTNAG	1 cut(s)	134
Hsp92II	CATG	2 cut(s)	43, 177
Kzo9I	GATC	2 cut(s)	34, 313
LpnPI	CCDG	1 cut(s)	105
LweI	GCATC	1 cut(s)	235
MaeI	CTAG	2 cut(s)	128, 186
MaeIII	GTNAC	1 cut(s)	281
MalI	GATC	2 cut(s)	36, 315
MboI	GATC	2 cut(s)	34, 313
MboII	GAAGA	1 cut(s)	87
MfeI	CAATTG	1 cut(s)	193
MhlI	GDGCHC	1 cut(s)	135
MluCI	AATT	3 cut(s)	65, 193, 235
MlyI	GAGTC	1 cut(s)	157
MnlI	CCTC	2 cut(s)	191, 248
MseI	TTAA	3 cut(s)	60, 71, 319
MunI	CAATTG	1 cut(s)	193
NdeII	GATC	2 cut(s)	34, 313
NlaIII	CATG	2 cut(s)	43, 177
NlaIV	GGNNCC	1 cut(s)	179
PcsI	WCGNNNNNNNCGW	1 cut(s)	259
PleI	GAGTC	1 cut(s)	157
PpsI	GAGTC	1 cut(s)	157
PpuMI	RGGWCCY	1 cut(s)	178
Psp124BI	GAGCTC	1 cut(s)	135
Psp5II	RGGWCCY	1 cut(s)	178
PspN4I	GGNNCC	1 cut(s)	179
PspPI	GGNCC	1 cut(s)	178
PspPPI	RGGWCCY	1 cut(s)	178
SacI	GAGCTC	1 cut(s)	135
SaqAI	TTAA	3 cut(s)	60, 71, 319
Sau3AI	GATC	2 cut(s)	34, 313
Sau96I	GGNCC	1 cut(s)	178
SchI	GAGTC	1 cut(s)	157
SduI	GDGCHC	1 cut(s)	135
SetI	ASST	6 cut(s)	94, 129, 135, 140, 183, 259
SfaNI	GCATC	1 cut(s)	235
SinI	GGWCC	1 cut(s)	178
Sse9I	AATT	3 cut(s)	65, 193, 235
SsiI	CCGC	1 cut(s)	75
SspMI	CTAG	2 cut(s)	128, 186
SstI	GAGCTC	1 cut(s)	135
TaqI	TCGA	1 cut(s)	289
TasI	AATT	3 cut(s)	65, 193, 235
Tru1I	TTAA	3 cut(s)	60, 71, 319
Tru9I	TTAA	3 cut(s)	60, 71, 319
TspDTI	ATGAA	1 cut(s)	309
VpaK11BI	GGWCC	1 cut(s)	178
XspI	CTAG	2 cut(s)	128, 186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.