Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0000899

Physical Location & Seq

Genomic Coordinates Reverse (-)

9851316 .. 9852044

Gene Structure 729 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1056000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGTTCTTCTTCAAATCAATCCCTCTGGGTCTCTTAGTGCTTTGCCTTTTACACCATTCTGCAATTGGTGCCTCCCCACTTTACCATTTTTGTTTCAGCCCAGAAAACTACACTGCTGATAGTCCATATGGTGCCAACTTGAACTCATTGTTCAGTCTTTTATACACCAAAGTTCCTCCTACTGGCTTTGGCCTTGGTTCAACTGGCCAAGCTAAAAACCAAGTGAATGGCTTGGCCCTTTGCCGCGGTGATGTCTCAAGCAAAGATTGCAATACTTGCGTGGTTGACGCAAGCAAAGAGATTCGCGAGCGCTGCCCTTATCGTAAAGGAGCCATAATTTGGTACGATCACTGCCTTTTAAAGTACTCAGATGTGAGCTTTTTTGGGCAAATTGATAGCAGGAACAGGTTCTATATGTGGAACGTCCAAGAAGTAGAGAATGGGACACTATTCAATGAGAAAGTTAAAGAGTTGTTAAGTGGGTTATCCAATGAAGCTTCTGAAGCTAATCAAAAGCTTTATGCTACTGGTGAGGTACAACTCGATACATTCACAACCCTTTATGGCATTGCTCAATGCACGAGGGACCTCTCTGGCGTTGATTGTAAAAAGTGTCTAGATAGTGCAATAAGCGAACTCCCAAACTGCTGCGATGCAAAACGAGGTGGGCGTGTTGTAGGTGGGAGCTGTAACTTTCGATATGAACTGTATCCCATTGTCAATACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0030312 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071944 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1204 Stress-antifung

Protein Analysis

243

Amino Acids

26.79

Weight (kDa)

6.42

Isoelectric Point (pI)

25.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stress-antifung	PF01657	31 - 124	4.3e-24	Salt stress response/antifungal
Stress-antifung	PF01657	145 - 236	2.4e-14	Salt stress response/antifungal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000899)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22060
fragaria_vesca	FvH4_2g10161
malus_domestica	MD05G1056000.v1.1 MD05G1056300.v1.1 MD10G1064400.v1.1
prunus_persica	Prupe.3G109800_v2.0.a1 Prupe.3G110100_v2.0.a1 Prupe.3G110200_v2.0.a1 Prupe.3G110300_v2.0.a1 Prupe.8G086600_v2.0.a1
pyrus_communis	pycom05g04770 pycom05g04780
rosa_chinensis	RchiOBHm_Chr1g0328011 RchiOBHm_Chr1g0328031 RchiOBHm_Chr2g0158681 RchiOBHm_Chr2g0160231 RchiOBHm_Chr2g0160251
rosa_laevigata	RLG00000014015 RLG00000021106 RLG00000021206 RLG00000021207 RLG00000029943 RLG00000029944 RLG00000029946 RLG00000029948
rosa_multiflora	Rmu_co8269469.1_g000001 Rmu_co8408147.1_g000001 Rmu_sc0000403.1_g000003 Rmu_sc0008269.1_g000008 Rmu_sc0020806.1_g000002
rosa_roxburghii	Rroxscaffold_2G00091070 Rroxscaffold_2G00091110 Rroxscaffold_4G00321960 Rroxscaffold_4G00321970 Rroxscaffold_4G00321980 Rroxscaffold_4G00322000 Rroxscaffold_4G00322030 Rroxscaffold_7G00200860 Rroxscaffold_7G00200940
rosa_rugosa	Rorug01G0073200 Rorug01G0073200 Rorug01G0073300 Rorug02G0471400 Rorug02G0472000 Rorug02G0482400 Rorug02G0482400
rosa_samantha	Rh1BG071900 Rh1BG072100 Rh2AG537200 Rh2AG547800 Rh2BG550400 Rh2BG561200 Rh2BG561400 Rh2CG520900 Rh2CG531800 Rh2CG532100 Rh6AG153200 Rh6CG149000
rosa_wichuraiana	Rw0G019500 Rw1G006970 Rw1G006980 Rw1G006990 Rw2G044480 Rw2G045320 Rw6G013180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	68, 131
AccB7I	CCANNNNNTGG	1 cut(s)	339
AccII	CGCG	2 cut(s)	246, 306
AciI	CCGC	2 cut(s)	244, 246
AcoI	YGGCCR	1 cut(s)	205
AcuI	CTGAAG	1 cut(s)	522
AfaI	GTAC	3 cut(s)	344, 365, 537
AfeI	AGCGCT	1 cut(s)	311
AfiI	CCNNNNNNNGG	2 cut(s)	182, 339
AgsI	TTSAA	4 cut(s)	13, 142, 201, 454
AluBI	AGCT	6 cut(s)	212, 378, 497, 506, 517, 687
AluI	AGCT	6 cut(s)	212, 378, 497, 506, 517, 687
Alw26I	GTCTC	2 cut(s)	35, 259
Aor51HI	AGCGCT	1 cut(s)	311
AoxI	GGCC	3 cut(s)	190, 205, 234
ApeKI	GCWGC	2 cut(s)	312, 648
Asp700I	GAANNNNTTC	1 cut(s)	407
AspLEI	GCGC	1 cut(s)	312
AspS9I	GGNCC	2 cut(s)	235, 586
AsuHPI	GGTGA	2 cut(s)	260, 542
AvaII	GGWCC	1 cut(s)	586
BalI	TGGCCA	1 cut(s)	207
BanI	GGYRCC	2 cut(s)	68, 131
BauI	CACGAG	1 cut(s)	580
BbvI	GCAGC	2 cut(s)	299, 635
BciVI	GTATCC	1 cut(s)	720
BcoDI	GTCTC	2 cut(s)	35, 259
BfaI	CTAG	1 cut(s)	617
BfoI	RGCGCY	1 cut(s)	313
BfuI	GTATCC	1 cut(s)	720
BisI	GCNGC	3 cut(s)	244, 313, 649
BlsI	GCNGC	3 cut(s)	245, 314, 650
BmcAI	AGTACT	1 cut(s)	365
Bme18I	GGWCC	1 cut(s)	586
BmgT120I	GGNCC	2 cut(s)	235, 586
BmiI	GGNNCC	4 cut(s)	70, 133, 331, 587
BmsI	GCATC	1 cut(s)	643
BpuEI	CTTGAG	1 cut(s)	241
BsaI	GGTCTC	1 cut(s)	35
BsaJI	CCNNGG	2 cut(s)	193, 244
Bsc4I	CCNNNNNNNGG	2 cut(s)	182, 339
Bse1I	ACTGG	3 cut(s)	187, 208, 532
Bse3DI	GCAATG	1 cut(s)	567
BseDI	CCNNGG	2 cut(s)	193, 244
BseLI	CCNNNNNNNGG	2 cut(s)	182, 339
BseMI	GCAATG	1 cut(s)	567
BseMII	CTCAG	1 cut(s)	381
BseNI	ACTGG	3 cut(s)	187, 208, 532
BseXI	GCAGC	2 cut(s)	299, 635
Bsh1236I	CGCG	2 cut(s)	246, 306
BshFI	GGCC	3 cut(s)	192, 207, 236
BshNI	GGYRCC	2 cut(s)	68, 131
BslFI	GGGAC	2 cut(s)	457, 599
BslI	CCNNNNNNNGG	2 cut(s)	182, 339
BsmAI	GTCTC	2 cut(s)	35, 259
BsmFI	GGGAC	2 cut(s)	457, 599
BsnI	GGCC	3 cut(s)	192, 207, 236
Bso31I	GGTCTC	1 cut(s)	35
Bsp143I	GATC	1 cut(s)	346
Bsp68I	TCGCGA	1 cut(s)	306
BspACI	CCGC	2 cut(s)	244, 246
BspANI	GGCC	3 cut(s)	192, 207, 236
BspCNI	CTCAG	1 cut(s)	380
BspFNI	CGCG	2 cut(s)	246, 306
BspLI	GGNNCC	4 cut(s)	70, 133, 331, 587
BspT107I	GGYRCC	2 cut(s)	68, 131
BspTNI	GGTCTC	1 cut(s)	35
BsrDI	GCAATG	1 cut(s)	567
BsrI	ACTGG	3 cut(s)	187, 208, 532
BssECI	CCNNGG	2 cut(s)	193, 244
BssMI	GATC	1 cut(s)	346
BssSI	CACGAG	1 cut(s)	580
BssT1I	CCWWGG	1 cut(s)	193
Bst2BI	CACGAG	1 cut(s)	580
Bst4CI	ACNGT	1 cut(s)	708
BstAPI	GCANNNNNTGC	3 cut(s)	68, 267, 276
BstC8I	GCNNGC	2 cut(s)	292, 308
BstDEI	CTNAG	2 cut(s)	34, 367
BstDSI	CCRYGG	1 cut(s)	244
BstFNI	CGCG	2 cut(s)	246, 306
BstH2I	RGCGCY	1 cut(s)	313
BstHHI	GCGC	1 cut(s)	312
BstKTI	GATC	1 cut(s)	349
BstMAI	GTCTC	2 cut(s)	35, 259
BstMBI	GATC	1 cut(s)	346
BstMWI	GCNNNNNNNGC	5 cut(s)	68, 267, 276, 312, 503
BstUI	CGCG	2 cut(s)	246, 306
BstV1I	GCAGC	2 cut(s)	299, 635
BstXI	CCANNNNNNTGG	1 cut(s)	227
BsuI	GTATCC	1 cut(s)	720
BsuRI	GGCC	3 cut(s)	192, 207, 236
BtgI	CCRYGG	1 cut(s)	244
BtgZI	GCGATG	1 cut(s)	666
BtsI	GCAGTG	2 cut(s)	111, 349
BtsIMutI	CAGTG	2 cut(s)	111, 349
BtuMI	TCGCGA	1 cut(s)	306
Cac8I	GCNNGC	2 cut(s)	292, 308
CfoI	GCGC	1 cut(s)	312
Cfr13I	GGNCC	2 cut(s)	235, 586
Cfr42I	CCGCGG	1 cut(s)	247
CseI	GACGC	1 cut(s)	296
Csp6I	GTAC	3 cut(s)	343, 364, 536
CviQI	GTAC	3 cut(s)	343, 364, 536
DdeI	CTNAG	2 cut(s)	34, 367
DpnI	GATC	1 cut(s)	348
DpnII	GATC	1 cut(s)	346
DraI	TTTAAA	1 cut(s)	360
EaeI	YGGCCR	1 cut(s)	205
Eco130I	CCWWGG	1 cut(s)	193
Eco31I	GGTCTC	1 cut(s)	35
Eco47I	GGWCC	1 cut(s)	586
Eco47III	AGCGCT	1 cut(s)	311
Eco57I	CTGAAG	1 cut(s)	522
EcoO109I	RGGNCCY	1 cut(s)	586
EcoT14I	CCWWGG	1 cut(s)	193
ErhI	CCWWGG	1 cut(s)	193
FaiI	YATR	9 cut(s)	127, 129, 163, 335, 414, 416, 522, 564, 702
FaqI	GGGAC	2 cut(s)	457, 599
FauNDI	CATATG	1 cut(s)	127
Fnu4HI	GCNGC	3 cut(s)	244, 313, 649
Fsp4HI	GCNGC	3 cut(s)	244, 313, 649
FspBI	CTAG	1 cut(s)	617
GlaI	GCGC	1 cut(s)	311
GluI	GCNGC	3 cut(s)	244, 313, 649
HaeII	RGCGCY	1 cut(s)	313
HaeIII	GGCC	3 cut(s)	192, 207, 236
HgaI	GACGC	1 cut(s)	296
HhaI	GCGC	1 cut(s)	312
Hin6I	GCGC	1 cut(s)	310
HinP1I	GCGC	1 cut(s)	310
HincII	GTYRAC	1 cut(s)	286
HindII	GTYRAC	1 cut(s)	286
HindIII	AAGCTT	2 cut(s)	495, 515
HinfI	GANTC	1 cut(s)	301
HphI	GGTGA	2 cut(s)	260, 542
Hpy166II	GTNNAC	1 cut(s)	286
Hpy188I	TCNGA	2 cut(s)	370, 502
Hpy188III	TCNNGA	2 cut(s)	305, 617
Hpy8I	GTNNAC	1 cut(s)	286
HpyCH4III	ACNGT	1 cut(s)	708
HpyCH4IV	ACGT	1 cut(s)	423
HpyCH4V	TGCA	5 cut(s)	62, 270, 579, 626, 656
HpyF10VI	GCNNNNNNNGC	5 cut(s)	68, 267, 276, 312, 503
HpyF3I	CTNAG	2 cut(s)	34, 367
HpySE526I	ACGT	1 cut(s)	423
HspAI	GCGC	1 cut(s)	310
KspI	CCGCGG	1 cut(s)	247
Kzo9I	GATC	1 cut(s)	346
LmnI	GCTCC	2 cut(s)	329, 684
LpnPI	CCDG	8 cut(s)	11, 114, 168, 189, 385, 391, 513, 579
Lsp1109I	GCAGC	2 cut(s)	299, 635
LweI	GCATC	1 cut(s)	643
MaeI	CTAG	1 cut(s)	617
MaeII	ACGT	1 cut(s)	423
MaeIII	GTNAC	1 cut(s)	689
MalI	GATC	1 cut(s)	348
MboI	GATC	1 cut(s)	346
MfeI	CAATTG	1 cut(s)	63
MlsI	TGGCCA	1 cut(s)	207
MluCI	AATT	3 cut(s)	63, 336, 390
MluNI	TGGCCA	1 cut(s)	207
MnlI	CCTC	7 cut(s)	33, 82, 186, 526, 576, 599, 656
Mox20I	TGGCCA	1 cut(s)	207
MroXI	GAANNNNTTC	1 cut(s)	407
MscI	TGGCCA	1 cut(s)	207
MseI	TTAA	4 cut(s)	359, 465, 476, 727
Msp20I	TGGCCA	1 cut(s)	207
MspA1I	CMGCKG	1 cut(s)	246
MunI	CAATTG	1 cut(s)	63
MvnI	CGCG	2 cut(s)	246, 306
MwoI	GCNNNNNNNGC	5 cut(s)	68, 267, 276, 312, 503
NdeI	CATATG	1 cut(s)	127
NdeII	GATC	1 cut(s)	346
NlaIV	GGNNCC	4 cut(s)	70, 133, 331, 587
NruI	TCGCGA	1 cut(s)	306
PcsI	WCGNNNNNNNCGW	1 cut(s)	667
PdmI	GAANNNNTTC	1 cut(s)	407
PfeI	GAWTC	1 cut(s)	301
PflMI	CCANNNNNTGG	1 cut(s)	339
PkrI	GCNGC	3 cut(s)	245, 314, 650
PpuMI	RGGWCCY	1 cut(s)	586
Psp5II	RGGWCCY	1 cut(s)	586
PspN4I	GGNNCC	4 cut(s)	70, 133, 331, 587
PspPI	GGNCC	2 cut(s)	235, 586
PspPPI	RGGWCCY	1 cut(s)	586
RruI	TCGCGA	1 cut(s)	306
RsaI	GTAC	3 cut(s)	344, 365, 537
RsaNI	GTAC	3 cut(s)	343, 364, 536
SacII	CCGCGG	1 cut(s)	247
SaqAI	TTAA	4 cut(s)	359, 465, 476, 727
SatI	GCNGC	3 cut(s)	244, 313, 649
Sau3AI	GATC	1 cut(s)	346
Sau96I	GGNCC	2 cut(s)	235, 586
ScaI	AGTACT	1 cut(s)	365
SfaNI	GCATC	1 cut(s)	643
Sfr303I	CCGCGG	1 cut(s)	247
SgrBI	CCGCGG	1 cut(s)	247
SinI	GGWCC	1 cut(s)	586
SmlI	CTYRAG	1 cut(s)	256
SmoI	CTYRAG	1 cut(s)	256
Sse9I	AATT	3 cut(s)	63, 336, 390
SsiI	CCGC	2 cut(s)	244, 246
SspMI	CTAG	1 cut(s)	617
StyI	CCWWGG	1 cut(s)	193
TaaI	ACNGT	1 cut(s)	708
TaiI	ACGT	1 cut(s)	426
TaqI	TCGA	2 cut(s)	543, 697
TasI	AATT	3 cut(s)	63, 336, 390
TatI	WGTACW	1 cut(s)	363
TauI	GCSGC	1 cut(s)	246
TfiI	GAWTC	1 cut(s)	301
Tru1I	TTAA	4 cut(s)	359, 465, 476, 727
Tru9I	TTAA	4 cut(s)	359, 465, 476, 727
TscAI	CASTG	2 cut(s)	118, 356
TseI	GCWGC	2 cut(s)	312, 648
TspDTI	ATGAA	2 cut(s)	507, 717
TspRI	CASTG	2 cut(s)	118, 356
Van91I	CCANNNNNTGG	1 cut(s)	339
VpaK11BI	GGWCC	1 cut(s)	586
XbaI	TCTAGA	1 cut(s)	616
XcmI	CCANNNNNNNNNTGG	1 cut(s)	62
XmnI	GAANNNNTTC	1 cut(s)	407
XspI	CTAG	1 cut(s)	617
ZrmI	AGTACT	1 cut(s)	365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.