Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8269469.1

Orthogroup ID

OG0000899

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 734

Gene Structure 734 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8269469.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 637 bp

ccatgaaaactacactgccaatagcacatatgatgcgcacttgactcggttattcatccttttacagaccaaagttcctcccaccggatttgcccttgcttcgactggtcaagcccaaaagaaagcaaatggccttgcactttgccgaggcgatgcctcaagtgaagattgcactacttgtgtggttgatgcaagcaaagatattagagagttctgcccgaacagcaaaggagccataatatggtatgaccactgcctcttaaagtactcaaatgtggacttctttgggaaaattgataacaaaaacaagttctatatgtggaacgttcaagaagtacagaatcccacacttttcaatgagagagttaaggaattgttgagtggattagctgttgaagcttctgatggtagtgctaatccgaagttttatgcaactggtgagctgcaacttgatacattcacaacactatatggtttagctacatgcacaagggacctctcatccccagattgtaagaagtgtcttgatggtgcaataagtgaattgccaaactgctgcaatgcaaagcgaggtgggcgcgttgtgggtgggagttgtaatgttggatttgaactttacccaattgttgggacatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0030312 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071944 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1204 Stress-antifung

Protein Analysis

211

Amino Acids

23.04

Weight (kDa)

5.94

Isoelectric Point (pI)

34.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000899)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22060
fragaria_vesca	FvH4_2g10161
malus_domestica	MD05G1056000.v1.1 MD05G1056300.v1.1 MD10G1064400.v1.1
prunus_persica	Prupe.3G109800_v2.0.a1 Prupe.3G110100_v2.0.a1 Prupe.3G110200_v2.0.a1 Prupe.3G110300_v2.0.a1 Prupe.8G086600_v2.0.a1
pyrus_communis	pycom05g04770 pycom05g04780
rosa_chinensis	RchiOBHm_Chr1g0328011 RchiOBHm_Chr1g0328031 RchiOBHm_Chr2g0158681 RchiOBHm_Chr2g0160231 RchiOBHm_Chr2g0160251
rosa_laevigata	RLG00000014015 RLG00000021106 RLG00000021206 RLG00000021207 RLG00000029943 RLG00000029944 RLG00000029946 RLG00000029948
rosa_multiflora	Rmu_co8269469.1_g000001 Rmu_co8408147.1_g000001 Rmu_sc0000403.1_g000003 Rmu_sc0008269.1_g000008 Rmu_sc0020806.1_g000002
rosa_roxburghii	Rroxscaffold_2G00091070 Rroxscaffold_2G00091110 Rroxscaffold_4G00321960 Rroxscaffold_4G00321970 Rroxscaffold_4G00321980 Rroxscaffold_4G00322000 Rroxscaffold_4G00322030 Rroxscaffold_7G00200860 Rroxscaffold_7G00200940
rosa_rugosa	Rorug01G0073200 Rorug01G0073200 Rorug01G0073300 Rorug02G0471400 Rorug02G0472000 Rorug02G0482400 Rorug02G0482400
rosa_samantha	Rh1BG071900 Rh1BG072100 Rh2AG537200 Rh2AG547800 Rh2BG550400 Rh2BG561200 Rh2BG561400 Rh2CG520900 Rh2CG531800 Rh2CG532100 Rh6AG153200 Rh6CG149000
rosa_wichuraiana	Rw0G019500 Rw1G006970 Rw1G006980 Rw1G006990 Rw2G044480 Rw2G045320 Rw6G013180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	37
AccB7I	CCANNNNNTGG	2 cut(s)	241, 627
AccII	CGCG	1 cut(s)	580
AclI	AACGTT	1 cut(s)	325
AfaI	GTAC	2 cut(s)	267, 337
AfiI	CCNNNNNNNGG	3 cut(s)	84, 241, 627
AgsI	TTSAA	4 cut(s)	330, 356, 396, 612
AluBI	AGCT	4 cut(s)	390, 399, 443, 480
AluI	AGCT	4 cut(s)	390, 399, 443, 480
AoxI	GGCC	1 cut(s)	131
ApeKI	GCWGC	2 cut(s)	443, 556
AspLEI	GCGC	2 cut(s)	38, 580
AspS9I	GGNCC	1 cut(s)	494
AsuHPI	GGTGA	1 cut(s)	450
AvaII	GGWCC	1 cut(s)	494
BbvI	GCAGC	2 cut(s)	430, 543
BccI	CCATC	2 cut(s)	399, 522
BcgI	CGANNNNNNTGC	2 cut(s)	27, 61
BisI	GCNGC	2 cut(s)	444, 557
BlsI	GCNGC	2 cut(s)	445, 558
BmcAI	AGTACT	1 cut(s)	267
Bme18I	GGWCC	1 cut(s)	494
BmgT120I	GGNCC	1 cut(s)	494
BmiI	GGNNCC	2 cut(s)	233, 495
BmsI	GCATC	3 cut(s)	23, 143, 179
BpuEI	CTTGAG	1 cut(s)	143
BsaJI	CCNNGG	1 cut(s)	146
BsaWI	WCCGGW	1 cut(s)	84
Bsc4I	CCNNNNNNNGG	3 cut(s)	84, 241, 627
Bse1I	ACTGG	2 cut(s)	110, 440
Bse3DI	GCAATG	1 cut(s)	566
BseDI	CCNNGG	1 cut(s)	146
BseGI	GGATG	2 cut(s)	55, 501
BseLI	CCNNNNNNNGG	3 cut(s)	84, 241, 627
BseMI	GCAATG	1 cut(s)	566
BseNI	ACTGG	2 cut(s)	110, 440
BseXI	GCAGC	2 cut(s)	430, 543
Bsh1236I	CGCG	1 cut(s)	580
BshFI	GGCC	1 cut(s)	133
BsiSI	CCGG	1 cut(s)	85
BslFI	GGGAC	1 cut(s)	507
BslI	CCNNNNNNNGG	3 cut(s)	84, 241, 627
BsmFI	GGGAC	1 cut(s)	507
BsnI	GGCC	1 cut(s)	133
BspANI	GGCC	1 cut(s)	133
BspFNI	CGCG	1 cut(s)	580
BspLI	GGNNCC	2 cut(s)	233, 495
BsrDI	GCAATG	1 cut(s)	566
BsrI	ACTGG	2 cut(s)	110, 440
BssECI	CCNNGG	1 cut(s)	146
BstC8I	GCNNGC	1 cut(s)	194
BstF5I	GGATG	2 cut(s)	55, 501
BstFNI	CGCG	1 cut(s)	580
BstHHI	GCGC	2 cut(s)	38, 580
BstMWI	GCNNNNNNNGC	3 cut(s)	223, 396, 575
BstNSI	RCATGY	1 cut(s)	487
BstUI	CGCG	1 cut(s)	580
BstV1I	GCAGC	2 cut(s)	430, 543
BsuRI	GGCC	1 cut(s)	133
BtgZI	GCGATG	1 cut(s)	166
BtsCI	GGATG	2 cut(s)	55, 501
BtsI	GCAGTG	2 cut(s)	13, 251
BtsIMutI	CAGTG	2 cut(s)	13, 251
Cac8I	GCNNGC	1 cut(s)	194
CfoI	GCGC	2 cut(s)	38, 580
Cfr13I	GGNCC	1 cut(s)	494
Csp6I	GTAC	2 cut(s)	266, 336
CspCI	CAANNNNNGTGG	2 cut(s)	71, 106
CviAII	CATG	2 cut(s)	3, 484
CviJI	RGCY	7 cut(s)	114, 133, 234, 390, 399, 443, 480
CviKI_1	RGCY	7 cut(s)	114, 133, 234, 390, 399, 443, 480
CviQI	GTAC	2 cut(s)	266, 336
Eco47I	GGWCC	1 cut(s)	494
EcoO109I	RGGNCCY	1 cut(s)	494
FaeI	CATG	2 cut(s)	6, 487
FaqI	GGGAC	1 cut(s)	507
FatI	CATG	2 cut(s)	2, 483
FauNDI	CATATG	1 cut(s)	29
Fnu4HI	GCNGC	2 cut(s)	444, 557
FokI	GGATG	2 cut(s)	42, 488
Fsp4HI	GCNGC	2 cut(s)	444, 557
FspAI	RTGCGCAY	1 cut(s)	37
FspI	TGCGCA	1 cut(s)	37
GlaI	GCGC	2 cut(s)	37, 579
GluI	GCNGC	2 cut(s)	444, 557
HaeIII	GGCC	1 cut(s)	133
HapII	CCGG	1 cut(s)	85
HhaI	GCGC	2 cut(s)	38, 580
Hin1II	CATG	2 cut(s)	6, 487
Hin6I	GCGC	2 cut(s)	36, 578
HinP1I	GCGC	2 cut(s)	36, 578
HindIII	AAGCTT	1 cut(s)	397
HinfI	GANTC	2 cut(s)	44, 341
HpaII	CCGG	1 cut(s)	85
HphI	GGTGA	1 cut(s)	450
Hpy166II	GTNNAC	1 cut(s)	278
Hpy188I	TCNGA	2 cut(s)	404, 421
Hpy188III	TCNNGA	2 cut(s)	330, 525
Hpy8I	GTNNAC	1 cut(s)	278
HpyCH4IV	ACGT	1 cut(s)	325
HpyCH4V	TGCA	9 cut(s)	138, 172, 192, 432, 446, 487, 534, 559, 564
HpyF10VI	GCNNNNNNNGC	3 cut(s)	223, 396, 575
HpySE526I	ACGT	1 cut(s)	325
Hsp92II	CATG	2 cut(s)	6, 487
HspAI	GCGC	2 cut(s)	36, 578
LmnI	GCTCC	1 cut(s)	231
LpnPI	CCDG	4 cut(s)	91, 98, 421, 520
Lsp1109I	GCAGC	2 cut(s)	430, 543
LweI	GCATC	3 cut(s)	23, 143, 179
MaeII	ACGT	1 cut(s)	325
MboII	GAAGA	1 cut(s)	177
MfeI	CAATTG	1 cut(s)	622
MluCI	AATT	4 cut(s)	292, 372, 543, 622
MlyI	GAGTC	1 cut(s)	38
MmeI	TCCRAC	1 cut(s)	584
MnlI	CCTC	6 cut(s)	88, 141, 167, 267, 507, 564
MseI	TTAA	2 cut(s)	261, 367
MspI	CCGG	1 cut(s)	85
MunI	CAATTG	1 cut(s)	622
MvnI	CGCG	1 cut(s)	580
MwoI	GCNNNNNNNGC	3 cut(s)	223, 396, 575
NdeI	CATATG	1 cut(s)	29
NlaIII	CATG	2 cut(s)	6, 487
NlaIV	GGNNCC	2 cut(s)	233, 495
NmeAIII	GCCGAG	1 cut(s)	171
NsbI	TGCGCA	1 cut(s)	37
NspI	RCATGY	1 cut(s)	487
PfeI	GAWTC	1 cut(s)	341
PflMI	CCANNNNNTGG	2 cut(s)	241, 627
PkrI	GCNGC	2 cut(s)	445, 558
PleI	GAGTC	1 cut(s)	38
PpsI	GAGTC	1 cut(s)	38
PpuMI	RGGWCCY	1 cut(s)	494
Psp1406I	AACGTT	1 cut(s)	325
Psp5II	RGGWCCY	1 cut(s)	494
PspN4I	GGNNCC	2 cut(s)	233, 495
PspPI	GGNCC	1 cut(s)	494
PspPPI	RGGWCCY	1 cut(s)	494
RsaI	GTAC	2 cut(s)	267, 337
RsaNI	GTAC	2 cut(s)	266, 336
SaqAI	TTAA	2 cut(s)	261, 367
SatI	GCNGC	2 cut(s)	444, 557
Sau96I	GGNCC	1 cut(s)	494
ScaI	AGTACT	1 cut(s)	267
SchI	GAGTC	1 cut(s)	38
SetI	ASST	7 cut(s)	328, 392, 401, 445, 482, 499, 575
SfaNI	GCATC	3 cut(s)	23, 143, 179
SinI	GGWCC	1 cut(s)	494
SmlI	CTYRAG	1 cut(s)	158
SmoI	CTYRAG	1 cut(s)	158
Sse9I	AATT	4 cut(s)	292, 372, 543, 622
TaiI	ACGT	1 cut(s)	328
TaqI	TCGA	1 cut(s)	102
TasI	AATT	4 cut(s)	292, 372, 543, 622
TatI	WGTACW	2 cut(s)	265, 335
TfiI	GAWTC	1 cut(s)	341
Tru1I	TTAA	2 cut(s)	261, 367
Tru9I	TTAA	2 cut(s)	261, 367
TscAI	CASTG	2 cut(s)	20, 258
TseI	GCWGC	2 cut(s)	443, 556
TspDTI	ATGAA	2 cut(s)	19, 44
TspRI	CASTG	2 cut(s)	20, 258
Van91I	CCANNNNNTGG	2 cut(s)	241, 627
VpaK11BI	GGWCC	1 cut(s)	494
XceI	RCATGY	1 cut(s)	487
ZrmI	AGTACT	1 cut(s)	267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.