Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0000899

Physical Location & Seq

Genomic Coordinates Forward (+)

77226653 .. 77227027

Gene Structure 375 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG561200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGTTAAAGTACGCAGATGTGGATTTCATTGGCCAAATTGATAACGCAAACAAGATCTATATGTGGAATGCTCAAGAAGTAGATAATCCTACACCATTCAATGAGAAGGTTACAGAATTATTAAGTGGATTGTCTACTACAGCCTCTTCTTCTAATCCAAAGCTTTATGCTACTGGCGAGGTGGAGCTCTATAAATCAACCAAGCTATATGGTTTAGTTCAATGCACGAGGGATGTATCTGAAACAGATTGCAAGACACTTCTTGATGGAGCAATAAGCGAACTGCCAGACTGTTGTGATGCAAAGCGAGGTGGGCGGGTTGTGGGCGGGAGTTGTAACTTTAGATACGAAATTTACCCTTTCGTTGATTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0030312 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071944 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1204 Stress-antifung

Protein Analysis

124

Amino Acids

13.71

Weight (kDa)

4.55

Isoelectric Point (pI)

32.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stress-antifung	PF01657	27 - 118	6.1e-13	Salt stress response/antifungal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000899)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22060
fragaria_vesca	FvH4_2g10161
malus_domestica	MD05G1056000.v1.1 MD05G1056300.v1.1 MD10G1064400.v1.1
prunus_persica	Prupe.3G109800_v2.0.a1 Prupe.3G110100_v2.0.a1 Prupe.3G110200_v2.0.a1 Prupe.3G110300_v2.0.a1 Prupe.8G086600_v2.0.a1
pyrus_communis	pycom05g04770 pycom05g04780
rosa_chinensis	RchiOBHm_Chr1g0328011 RchiOBHm_Chr1g0328031 RchiOBHm_Chr2g0158681 RchiOBHm_Chr2g0160231 RchiOBHm_Chr2g0160251
rosa_laevigata	RLG00000014015 RLG00000021106 RLG00000021206 RLG00000021207 RLG00000029943 RLG00000029944 RLG00000029946 RLG00000029948
rosa_multiflora	Rmu_co8269469.1_g000001 Rmu_co8408147.1_g000001 Rmu_sc0000403.1_g000003 Rmu_sc0008269.1_g000008 Rmu_sc0020806.1_g000002
rosa_roxburghii	Rroxscaffold_2G00091070 Rroxscaffold_2G00091110 Rroxscaffold_4G00321960 Rroxscaffold_4G00321970 Rroxscaffold_4G00321980 Rroxscaffold_4G00322000 Rroxscaffold_4G00322030 Rroxscaffold_7G00200860 Rroxscaffold_7G00200940
rosa_rugosa	Rorug01G0073200 Rorug01G0073200 Rorug01G0073300 Rorug02G0471400 Rorug02G0472000 Rorug02G0482400 Rorug02G0482400
rosa_samantha	Rh1BG071900 Rh1BG072100 Rh2AG537200 Rh2AG547800 Rh2BG550400 Rh2BG561200 Rh2BG561400 Rh2CG520900 Rh2CG531800 Rh2CG532100 Rh6AG153200 Rh6CG149000
rosa_wichuraiana	Rw0G019500 Rw1G006970 Rw1G006980 Rw1G006990 Rw2G044480 Rw2G045320 Rw6G013180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	134
AciI	CCGC	2 cut(s)	316, 327
AcoI	YGGCCR	1 cut(s)	31
AcsI	RAATTY	1 cut(s)	351
AfaI	GTAC	1 cut(s)	11
AgsI	TTSAA	2 cut(s)	100, 221
AluBI	AGCT	3 cut(s)	163, 187, 205
AluI	AGCT	3 cut(s)	163, 187, 205
Alw21I	GWGCWC	1 cut(s)	189
AoxI	GGCC	1 cut(s)	31
ApoI	RAATTY	1 cut(s)	351
BalI	TGGCCA	1 cut(s)	33
BanII	GRGCYC	1 cut(s)	189
BauI	CACGAG	1 cut(s)	226
Bbv12I	GWGCWC	1 cut(s)	189
BccI	CCATC	1 cut(s)	260
BfmI	CTRYAG	1 cut(s)	138
BglII	AGATCT	1 cut(s)	54
BmsI	GCATC	1 cut(s)	289
BpuEI	CTTGAG	1 cut(s)	57
Bse1I	ACTGG	1 cut(s)	178
BseGI	GGATG	1 cut(s)	238
BseNI	ACTGG	1 cut(s)	178
BshFI	GGCC	1 cut(s)	33
BsiHKAI	GWGCWC	1 cut(s)	189
BsmI	GAATGC	1 cut(s)	73
BsnI	GGCC	1 cut(s)	33
Bsp1286I	GDGCHC	1 cut(s)	189
Bsp143I	GATC	1 cut(s)	54
BspACI	CCGC	2 cut(s)	316, 327
BspANI	GGCC	1 cut(s)	33
BsrI	ACTGG	1 cut(s)	178
BssMI	GATC	1 cut(s)	54
BssSI	CACGAG	1 cut(s)	226
Bst2BI	CACGAG	1 cut(s)	226
Bst4CI	ACNGT	1 cut(s)	293
Bst6I	CTCTTC	1 cut(s)	151
BstF5I	GGATG	1 cut(s)	238
BstKTI	GATC	1 cut(s)	57
BstMBI	GATC	1 cut(s)	54
BstMWI	GCNNNNNNNGC	1 cut(s)	313
BstSFI	CTRYAG	1 cut(s)	138
BstX2I	RGATCY	1 cut(s)	54
BstYI	RGATCY	1 cut(s)	54
BsuRI	GGCC	1 cut(s)	33
BtsCI	GGATG	1 cut(s)	238
Csp6I	GTAC	1 cut(s)	10
CviJI	RGCY	5 cut(s)	33, 143, 163, 187, 205
CviKI_1	RGCY	5 cut(s)	33, 143, 163, 187, 205
CviQI	GTAC	1 cut(s)	10
DpnI	GATC	1 cut(s)	56
DpnII	GATC	1 cut(s)	54
EaeI	YGGCCR	1 cut(s)	31
Eam1104I	CTCTTC	1 cut(s)	151
EarI	CTCTTC	1 cut(s)	151
Ecl136II	GAGCTC	1 cut(s)	187
Eco24I	GRGCYC	1 cut(s)	189
Eco53kI	GAGCTC	1 cut(s)	187
EcoICRI	GAGCTC	1 cut(s)	187
EcoT38I	GRGCYC	1 cut(s)	189
FaiI	YATR	6 cut(s)	60, 62, 168, 192, 208, 210
FauI	CCCGC	2 cut(s)	309, 320
FblI	GTMKAC	1 cut(s)	134
FokI	GGATG	1 cut(s)	245
FriOI	GRGCYC	1 cut(s)	189
HaeIII	GGCC	1 cut(s)	33
HindIII	AAGCTT	1 cut(s)	161
HinfI	GANTC	1 cut(s)	368
Hpy166II	GTNNAC	1 cut(s)	135
Hpy188I	TCNGA	1 cut(s)	241
Hpy188III	TCNNGA	2 cut(s)	74, 263
Hpy8I	GTNNAC	1 cut(s)	135
HpyAV	CCTTC	1 cut(s)	100
HpyCH4III	ACNGT	1 cut(s)	293
HpyCH4V	TGCA	3 cut(s)	225, 252, 302
HpyF10VI	GCNNNNNNNGC	1 cut(s)	313
Kzo9I	GATC	1 cut(s)	54
LmnI	GCTCC	2 cut(s)	184, 269
LpnPI	CCDG	2 cut(s)	159, 300
LweI	GCATC	1 cut(s)	289
MaeIII	GTNAC	2 cut(s)	109, 335
MalI	GATC	1 cut(s)	56
MboI	GATC	1 cut(s)	54
MboII	GAAGA	2 cut(s)	138, 141
MflI	RGATCY	1 cut(s)	54
MhlI	GDGCHC	1 cut(s)	189
MlsI	TGGCCA	1 cut(s)	33
MluCI	AATT	3 cut(s)	36, 116, 351
MluNI	TGGCCA	1 cut(s)	33
MnlI	CCTC	4 cut(s)	154, 172, 222, 302
Mox20I	TGGCCA	1 cut(s)	33
MscI	TGGCCA	1 cut(s)	33
MseI	TTAA	3 cut(s)	5, 122, 373
Msp20I	TGGCCA	1 cut(s)	33
Mva1269I	GAATGC	1 cut(s)	73
MwoI	GCNNNNNNNGC	1 cut(s)	313
NdeII	GATC	1 cut(s)	54
PctI	GAATGC	1 cut(s)	73
PfeI	GAWTC	1 cut(s)	368
Psp124BI	GAGCTC	1 cut(s)	189
PsuI	RGATCY	1 cut(s)	54
RsaI	GTAC	1 cut(s)	11
RsaNI	GTAC	1 cut(s)	10
SacI	GAGCTC	1 cut(s)	189
SaqAI	TTAA	3 cut(s)	5, 122, 373
Sau3AI	GATC	1 cut(s)	54
SduI	GDGCHC	1 cut(s)	189
SetI	ASST	6 cut(s)	111, 165, 183, 189, 207, 313
SfaNI	GCATC	1 cut(s)	289
SfcI	CTRYAG	1 cut(s)	138
SmlI	CTYRAG	1 cut(s)	72
SmoI	CTYRAG	1 cut(s)	72
Sse9I	AATT	3 cut(s)	36, 116, 351
SsiI	CCGC	2 cut(s)	316, 327
SstI	GAGCTC	1 cut(s)	189
TaaI	ACNGT	1 cut(s)	293
TasI	AATT	3 cut(s)	36, 116, 351
TfiI	GAWTC	1 cut(s)	368
Tru1I	TTAA	3 cut(s)	5, 122, 373
Tru9I	TTAA	3 cut(s)	5, 122, 373
TspDTI	ATGAA	1 cut(s)	16
XapI	RAATTY	1 cut(s)	351
XmiI	GTMKAC	1 cut(s)	134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.