Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0000899

Physical Location & Seq

Genomic Coordinates Forward (+)

71991671 .. 71992243

Gene Structure 573 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021106

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGCTTAATCATTTATCCACCAAAGTCCCTCCAACTGGATTCGGGGTTGCTTCAACAGGTCTAGGTCCGAACAAAGTGAACGGACTAGCGCTGTGCCGAGGCGACGTCTCAAGCCCAAAGTGTAAGACTTGTGTCATTGAAGCAAGCAAAGAGCTTCGTGCACGCTGCCCTCATAAAAAAGGAGCCGTAATATGGTACGACCATTGCATGCTGAAGTACTCAAATGGCAACTTCTTTGGGCAAATTGATAGCACAAACAAGTTCTATATGTGGAACACCAAGACCCTCGATAAATCGAACAAGTTGTATGGTTTAGTTCAGTGCACGAGGGACCTATCTCGCCTGGAATGTAAGAAGTGTCTTGATGTTGCAATAAGTGAACTGCCGAAATGTTGTGATGCGAAACGAGGCGGGCGCGTAGGAGGTGGGAGTTGTAACTTCCGATATGAACTTTCCCGCTTCGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0030312 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071944 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1204 Stress-antifung

Protein Analysis

156

Amino Acids

17.15

Weight (kDa)

9.39

Isoelectric Point (pI)

42.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stress-antifung	PF01657	2 - 75	6.2e-19	Salt stress response/antifungal
Stress-antifung	PF01657	86 - 151	3.2e-11	Salt stress response/antifungal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000899)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22060
fragaria_vesca	FvH4_2g10161
malus_domestica	MD05G1056000.v1.1 MD05G1056300.v1.1 MD10G1064400.v1.1
prunus_persica	Prupe.3G109800_v2.0.a1 Prupe.3G110100_v2.0.a1 Prupe.3G110200_v2.0.a1 Prupe.3G110300_v2.0.a1 Prupe.8G086600_v2.0.a1
pyrus_communis	pycom05g04770 pycom05g04780
rosa_chinensis	RchiOBHm_Chr1g0328011 RchiOBHm_Chr1g0328031 RchiOBHm_Chr2g0158681 RchiOBHm_Chr2g0160231 RchiOBHm_Chr2g0160251
rosa_laevigata	RLG00000014015 RLG00000021106 RLG00000021206 RLG00000021207 RLG00000029943 RLG00000029944 RLG00000029946 RLG00000029948
rosa_multiflora	Rmu_co8269469.1_g000001 Rmu_co8408147.1_g000001 Rmu_sc0000403.1_g000003 Rmu_sc0008269.1_g000008 Rmu_sc0020806.1_g000002
rosa_roxburghii	Rroxscaffold_2G00091070 Rroxscaffold_2G00091110 Rroxscaffold_4G00321960 Rroxscaffold_4G00321970 Rroxscaffold_4G00321980 Rroxscaffold_4G00322000 Rroxscaffold_4G00322030 Rroxscaffold_7G00200860 Rroxscaffold_7G00200940
rosa_rugosa	Rorug01G0073200 Rorug01G0073200 Rorug01G0073300 Rorug02G0471400 Rorug02G0472000 Rorug02G0482400 Rorug02G0482400
rosa_samantha	Rh1BG071900 Rh1BG072100 Rh2AG537200 Rh2AG547800 Rh2BG550400 Rh2BG561200 Rh2BG561400 Rh2CG520900 Rh2CG531800 Rh2CG532100 Rh6AG153200 Rh6CG149000
rosa_wichuraiana	Rw0G019500 Rw1G006970 Rw1G006980 Rw1G006990 Rw2G044480 Rw2G045320 Rw6G013180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	108
AccII	CGCG	1 cut(s)	417
AciI	CCGC	2 cut(s)	411, 457
AcuI	CTGAAG	1 cut(s)	233
AcyI	GRCGYC	1 cut(s)	105
AfaI	GTAC	2 cut(s)	197, 218
AfeI	AGCGCT	1 cut(s)	90
AfiI	CCNNNNNNNGG	2 cut(s)	35, 192
AgsI	TTSAA	2 cut(s)	54, 140
AjnI	CCWGG	1 cut(s)	342
AluBI	AGCT	1 cut(s)	154
AluI	AGCT	1 cut(s)	154
Alw21I	GWGCWC	2 cut(s)	163, 326
Alw26I	GTCTC	1 cut(s)	112
Alw44I	GTGCAC	2 cut(s)	159, 322
Aor51HI	AGCGCT	1 cut(s)	90
ApaLI	GTGCAC	2 cut(s)	159, 322
ApeKI	GCWGC	1 cut(s)	165
AspLEI	GCGC	2 cut(s)	91, 417
AspS9I	GGNCC	2 cut(s)	65, 331
AvaII	GGWCC	2 cut(s)	65, 331
BaeGI	GKGCMC	2 cut(s)	163, 326
BauI	CACGAG	1 cut(s)	325
Bbv12I	GWGCWC	2 cut(s)	163, 326
BbvI	GCAGC	1 cut(s)	152
BceAI	ACGGC	1 cut(s)	170
BciT130I	CCWGG	1 cut(s)	344
BcoDI	GTCTC	1 cut(s)	112
BfaI	CTAG	2 cut(s)	62, 86
BfoI	RGCGCY	1 cut(s)	92
BisI	GCNGC	1 cut(s)	166
BlsI	GCNGC	1 cut(s)	167
BmcAI	AGTACT	1 cut(s)	218
Bme1390I	CCNGG	1 cut(s)	344
Bme18I	GGWCC	2 cut(s)	65, 331
BmgT120I	GGNCC	2 cut(s)	65, 331
BmiI	GGNNCC	2 cut(s)	184, 332
BmrFI	CCNGG	1 cut(s)	344
BmsI	GCATC	1 cut(s)	388
BoxI	GACNNNNGTC	1 cut(s)	131
BpuEI	CTTGAG	1 cut(s)	94
BsaHI	GRCGYC	1 cut(s)	105
BsaJI	CCNNGG	1 cut(s)	97
Bsc4I	CCNNNNNNNGG	2 cut(s)	35, 192
Bse1I	ACTGG	1 cut(s)	40
Bse3DI	GCAATG	1 cut(s)	202
BseBI	CCWGG	1 cut(s)	344
BseDI	CCNNGG	1 cut(s)	97
BseLI	CCNNNNNNNGG	2 cut(s)	35, 192
BseMI	GCAATG	1 cut(s)	202
BseNI	ACTGG	1 cut(s)	40
BseSI	GKGCMC	2 cut(s)	163, 326
BseXI	GCAGC	1 cut(s)	152
Bsh1236I	CGCG	1 cut(s)	417
BsiHKAI	GWGCWC	2 cut(s)	163, 326
BslFI	GGGAC	2 cut(s)	11, 344
BslI	CCNNNNNNNGG	2 cut(s)	35, 192
BsmAI	GTCTC	1 cut(s)	112
BsmBI	CGTCTC	1 cut(s)	112
BsmFI	GGGAC	2 cut(s)	11, 344
Bsp1286I	GDGCHC	2 cut(s)	163, 326
BspACI	CCGC	2 cut(s)	411, 457
BspFNI	CGCG	1 cut(s)	417
BspLI	GGNNCC	2 cut(s)	184, 332
BsrDI	GCAATG	1 cut(s)	202
BsrI	ACTGG	1 cut(s)	40
BssECI	CCNNGG	1 cut(s)	97
BssNI	GRCGYC	1 cut(s)	105
BssSI	CACGAG	1 cut(s)	325
Bst2BI	CACGAG	1 cut(s)	325
Bst2UI	CCWGG	1 cut(s)	344
BstACI	GRCGYC	1 cut(s)	105
BstC8I	GCNNGC	4 cut(s)	145, 163, 209, 413
BstFNI	CGCG	1 cut(s)	417
BstH2I	RGCGCY	1 cut(s)	92
BstHHI	GCGC	2 cut(s)	91, 417
BstMAI	GTCTC	1 cut(s)	112
BstNI	CCWGG	1 cut(s)	344
BstNSI	RCATGY	1 cut(s)	211
BstPAI	GACNNNNGTC	1 cut(s)	131
BstSCI	CCNGG	1 cut(s)	342
BstSLI	GKGCMC	2 cut(s)	163, 326
BstUI	CGCG	1 cut(s)	417
BstV1I	GCAGC	1 cut(s)	152
BtsIMutI	CAGTG	1 cut(s)	326
Cac8I	GCNNGC	4 cut(s)	145, 163, 209, 413
CfoI	GCGC	2 cut(s)	91, 417
Cfr13I	GGNCC	2 cut(s)	65, 331
Csp6I	GTAC	2 cut(s)	196, 217
CviAII	CATG	1 cut(s)	208
CviJI	RGCY	3 cut(s)	114, 154, 185
CviKI_1	RGCY	3 cut(s)	114, 154, 185
CviQI	GTAC	2 cut(s)	196, 217
Eco47I	GGWCC	2 cut(s)	65, 331
Eco47III	AGCGCT	1 cut(s)	90
Eco57I	CTGAAG	1 cut(s)	233
EcoO109I	RGGNCCY	1 cut(s)	331
EcoRII	CCWGG	1 cut(s)	342
Esp3I	CGTCTC	1 cut(s)	112
FaeI	CATG	1 cut(s)	211
FaiI	YATR	7 cut(s)	174, 193, 209, 267, 269, 309, 447
FaqI	GGGAC	2 cut(s)	11, 344
FatI	CATG	1 cut(s)	207
FauI	CCCGC	2 cut(s)	404, 464
Fnu4HI	GCNGC	1 cut(s)	166
Fsp4HI	GCNGC	1 cut(s)	166
FspBI	CTAG	2 cut(s)	62, 86
GlaI	GCGC	2 cut(s)	90, 416
GluI	GCNGC	1 cut(s)	166
HaeII	RGCGCY	1 cut(s)	92
HhaI	GCGC	2 cut(s)	91, 417
Hin1I	GRCGYC	1 cut(s)	105
Hin1II	CATG	1 cut(s)	211
Hin6I	GCGC	2 cut(s)	89, 415
HinP1I	GCGC	2 cut(s)	89, 415
HinfI	GANTC	1 cut(s)	39
Hpy166II	GTNNAC	4 cut(s)	79, 161, 324, 380
Hpy188I	TCNGA	2 cut(s)	69, 443
Hpy188III	TCNNGA	1 cut(s)	362
Hpy8I	GTNNAC	4 cut(s)	79, 161, 324, 380
Hpy99I	CGWCG	1 cut(s)	107
HpyCH4IV	ACGT	1 cut(s)	105
HpyCH4V	TGCA	4 cut(s)	161, 207, 324, 371
HpySE526I	ACGT	1 cut(s)	105
Hsp92I	GRCGYC	1 cut(s)	105
Hsp92II	CATG	1 cut(s)	211
HspAI	GCGC	2 cut(s)	89, 415
LmnI	GCTCC	1 cut(s)	182
LpnPI	CCDG	4 cut(s)	21, 42, 329, 356
Lsp1109I	GCAGC	1 cut(s)	152
LweI	GCATC	1 cut(s)	388
MaeI	CTAG	2 cut(s)	62, 86
MaeII	ACGT	1 cut(s)	105
MaeIII	GTNAC	1 cut(s)	434
MhlI	GDGCHC	2 cut(s)	163, 326
MluCI	AATT	1 cut(s)	243
MmeI	TCCRAC	1 cut(s)	56
MnlI	CCTC	7 cut(s)	39, 92, 180, 296, 321, 401, 416
MseI	TTAA	1 cut(s)	6
MspR9I	CCNGG	1 cut(s)	344
MvaI	CCWGG	1 cut(s)	344
MvnI	CGCG	1 cut(s)	417
NlaIII	CATG	1 cut(s)	211
NlaIV	GGNNCC	2 cut(s)	184, 332
NmeAIII	GCCGAG	1 cut(s)	122
NspI	RCATGY	1 cut(s)	211
PaeI	GCATGC	1 cut(s)	211
PfeI	GAWTC	1 cut(s)	39
PkrI	GCNGC	1 cut(s)	167
PpuMI	RGGWCCY	1 cut(s)	331
PshAI	GACNNNNGTC	1 cut(s)	131
Psp5II	RGGWCCY	1 cut(s)	331
Psp6I	CCWGG	1 cut(s)	342
PspGI	CCWGG	1 cut(s)	342
PspN4I	GGNNCC	2 cut(s)	184, 332
PspPI	GGNCC	2 cut(s)	65, 331
PspPPI	RGGWCCY	1 cut(s)	331
RsaI	GTAC	2 cut(s)	197, 218
RsaNI	GTAC	2 cut(s)	196, 217
SaqAI	TTAA	1 cut(s)	6
SatI	GCNGC	1 cut(s)	166
Sau96I	GGNCC	2 cut(s)	65, 331
ScaI	AGTACT	1 cut(s)	218
ScrFI	CCNGG	1 cut(s)	344
SduI	GDGCHC	2 cut(s)	163, 326
SetI	ASST	6 cut(s)	61, 67, 108, 156, 336, 427
SfaNI	GCATC	1 cut(s)	388
SinI	GGWCC	2 cut(s)	65, 331
SmlI	CTYRAG	1 cut(s)	109
SmoI	CTYRAG	1 cut(s)	109
SphI	GCATGC	1 cut(s)	211
Sse9I	AATT	1 cut(s)	243
SsiI	CCGC	2 cut(s)	411, 457
SspMI	CTAG	2 cut(s)	62, 86
StyD4I	CCNGG	1 cut(s)	342
TaiI	ACGT	1 cut(s)	108
TaqI	TCGA	2 cut(s)	288, 296
TasI	AATT	1 cut(s)	243
TatI	WGTACW	1 cut(s)	216
TfiI	GAWTC	1 cut(s)	39
Tru1I	TTAA	1 cut(s)	6
Tru9I	TTAA	1 cut(s)	6
TscAI	CASTG	1 cut(s)	326
TseI	GCWGC	1 cut(s)	165
TspDTI	ATGAA	1 cut(s)	462
TspGWI	ACGGA	1 cut(s)	96
TspRI	CASTG	1 cut(s)	326
VneI	GTGCAC	2 cut(s)	159, 322
VpaK11BI	GGWCC	2 cut(s)	65, 331
XceI	RCATGY	1 cut(s)	211
XspI	CTAG	2 cut(s)	62, 86
ZraI	GACGTC	1 cut(s)	106
ZrmI	AGTACT	1 cut(s)	218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.