Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000899

Physical Location & Seq

Genomic Coordinates Forward (+)

7770899 .. 7772357

Gene Structure 1459 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G22060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGTCTTCATTAAAACGCATCGTTTGGTTCCCTATCTTGGCCATAGCCATACAAATTCTCTCTATACATACCGTTTTGTCTCAAAGCCAGAACAATGCGTTTCTCTTCCACAAGTGCTCAGACATCGAAGGAAGCTTTACCTCAAAAAGTCTCTACGAGTCAAATCTCAACAATCTCTTTAGTCAGCTCTCTTACAAAGTTCCATCCACCGGTTTTGCCGCCTCCTCCACTGGCAACACTCCAAACAACGTCAACGGTTTGGCCCTTTGCCGCGGTGATGCCTCCTCCTCTGACTGCCGCTCTTGTCTTGAGACTGCCATCCCCGAGCTACGTCAGAGATGTCCGAACAACAAGGCGGGAATAGTATGGTATGACAACTGTCTTGTAAAGTATTCCTCGACCAATTTCTTCGGGAAGATAGATTTCGAGAACAGGTTCTATTTGTACAACGTCAAAAATGTGAGTGATCCATCAACATTCAACTCGCAGACGAAAGCTCTTTTAACCGAGCTGACAAAGAAAGCGACTACTAGAGATAACCAGAAGCTATTTGCGACAGGAGAGAAAAATATCGGAAAGAATAAATTGTACGGACTAGTGCAATGTACGAGGGACTTGAAGAGTATTACTTGTAAGGCGTGTTTAAATGGAATTATTGGGGAGCTTCCTAACTGTTGCGACGGTAAAGAAGGAGGGAGAGTTGTGGGTGGGAGCTGTAACTTTAGGTATGAGATTTACCCTTTTGTTAAGACTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0030312 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071944 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1204 Stress-antifung

Protein Analysis

252

Amino Acids

27.86

Weight (kDa)

9.04

Isoelectric Point (pI)

40.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stress-antifung	PF01657	38 - 133	2.9e-25	Salt stress response/antifungal
Stress-antifung	PF01657	152 - 245	1e-14	Salt stress response/antifungal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000899)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22060
fragaria_vesca	FvH4_2g10161
malus_domestica	MD05G1056000.v1.1 MD05G1056300.v1.1 MD10G1064400.v1.1
prunus_persica	Prupe.3G109800_v2.0.a1 Prupe.3G110100_v2.0.a1 Prupe.3G110200_v2.0.a1 Prupe.3G110300_v2.0.a1 Prupe.8G086600_v2.0.a1
pyrus_communis	pycom05g04770 pycom05g04780
rosa_chinensis	RchiOBHm_Chr1g0328011 RchiOBHm_Chr1g0328031 RchiOBHm_Chr2g0158681 RchiOBHm_Chr2g0160231 RchiOBHm_Chr2g0160251
rosa_laevigata	RLG00000014015 RLG00000021106 RLG00000021206 RLG00000021207 RLG00000029943 RLG00000029944 RLG00000029946 RLG00000029948
rosa_multiflora	Rmu_co8269469.1_g000001 Rmu_co8408147.1_g000001 Rmu_sc0000403.1_g000003 Rmu_sc0008269.1_g000008 Rmu_sc0020806.1_g000002
rosa_roxburghii	Rroxscaffold_2G00091070 Rroxscaffold_2G00091110 Rroxscaffold_4G00321960 Rroxscaffold_4G00321970 Rroxscaffold_4G00321980 Rroxscaffold_4G00322000 Rroxscaffold_4G00322030 Rroxscaffold_7G00200860 Rroxscaffold_7G00200940
rosa_rugosa	Rorug01G0073200 Rorug01G0073200 Rorug01G0073300 Rorug02G0471400 Rorug02G0472000 Rorug02G0482400 Rorug02G0482400
rosa_samantha	Rh1BG071900 Rh1BG072100 Rh2AG537200 Rh2AG547800 Rh2BG550400 Rh2BG561200 Rh2BG561400 Rh2CG520900 Rh2CG531800 Rh2CG532100 Rh6AG153200 Rh6CG149000
rosa_wichuraiana	Rw0G019500 Rw1G006970 Rw1G006980 Rw1G006990 Rw2G044480 Rw2G045320 Rw6G013180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	300
AccII	CGCG	1 cut(s)	273
AciI	CCGC	5 cut(s)	219, 271, 273, 298, 356
AclWI	GGATC	1 cut(s)	461
AcoI	YGGCCR	1 cut(s)	39
AcsI	RAATTY	1 cut(s)	54
AfaI	GTAC	3 cut(s)	446, 590, 607
AfiI	CCNNNNNNNGG	2 cut(s)	37, 209
AgeI	ACCGGT	1 cut(s)	209
AgsI	TTSAA	2 cut(s)	481, 619
AhlI	ACTAGT	1 cut(s)	595
AluBI	AGCT	8 cut(s)	135, 187, 328, 497, 511, 547, 664, 714
AluI	AGCT	8 cut(s)	135, 187, 328, 497, 511, 547, 664, 714
Alw21I	GWGCWC	1 cut(s)	119
Alw26I	GTCTC	3 cut(s)	84, 155, 305
AlwI	GGATC	1 cut(s)	461
Ama87I	CYCGRG	1 cut(s)	323
AoxI	GGCC	2 cut(s)	39, 261
ApoI	RAATTY	1 cut(s)	54
AsiGI	ACCGGT	1 cut(s)	209
Asp700I	GAANNNNTTC	1 cut(s)	434
AspS9I	GGNCC	1 cut(s)	262
AsuHPI	GGTGA	1 cut(s)	287
AvaI	CYCGRG	1 cut(s)	323
BalI	TGGCCA	1 cut(s)	41
Bbv12I	GWGCWC	1 cut(s)	119
BccI	CCATC	3 cut(s)	211, 326, 478
BcoDI	GTCTC	3 cut(s)	84, 155, 305
BcuI	ACTAGT	1 cut(s)	595
BfaI	CTAG	2 cut(s)	531, 596
BisI	GCNGC	3 cut(s)	219, 271, 298
BlsI	GCNGC	3 cut(s)	220, 272, 299
BmeT110I	CYCGRG	1 cut(s)	323
BmgT120I	GGNCC	1 cut(s)	262
BmiI	GGNNCC	1 cut(s)	29
BmsI	GCATC	2 cut(s)	27, 268
BoxI	GACNNNNGTC	1 cut(s)	378
BpuEI	CTTGAG	1 cut(s)	329
BsaJI	CCNNGG	1 cut(s)	271
BsaWI	WCCGGW	1 cut(s)	209
BsaXI	ACNNNNNCTCC	2 cut(s)	684, 714
Bsc4I	CCNNNNNNNGG	2 cut(s)	37, 209
Bse118I	RCCGGY	1 cut(s)	209
Bse1I	ACTGG	1 cut(s)	235
Bse3DI	GCAATG	1 cut(s)	608
BseDI	CCNNGG	1 cut(s)	271
BseGI	GGATG	2 cut(s)	203, 318
BseLI	CCNNNNNNNGG	2 cut(s)	37, 209
BseMI	GCAATG	1 cut(s)	608
BseMII	CTCAG	1 cut(s)	132
BseNI	ACTGG	1 cut(s)	235
BseRI	GAGGAG	3 cut(s)	214, 274, 277
Bsh1236I	CGCG	1 cut(s)	273
BshFI	GGCC	2 cut(s)	41, 263
BshTI	ACCGGT	1 cut(s)	209
BsiHKAI	GWGCWC	1 cut(s)	119
BsiHKCI	CYCGRG	1 cut(s)	323
BsiSI	CCGG	1 cut(s)	210
BslFI	GGGAC	1 cut(s)	626
BslI	CCNNNNNNNGG	2 cut(s)	37, 209
BsmAI	GTCTC	3 cut(s)	84, 155, 305
BsmFI	GGGAC	1 cut(s)	626
BsnI	GGCC	2 cut(s)	41, 263
BsoBI	CYCGRG	1 cut(s)	323
Bsp1286I	GDGCHC	1 cut(s)	119
Bsp1407I	TGTACA	1 cut(s)	444
Bsp143I	GATC	1 cut(s)	466
BspACI	CCGC	5 cut(s)	219, 271, 273, 298, 356
BspANI	GGCC	2 cut(s)	41, 263
BspCNI	CTCAG	1 cut(s)	131
BspFNI	CGCG	1 cut(s)	273
BspLI	GGNNCC	1 cut(s)	29
BspPI	GGATC	1 cut(s)	461
BsrBI	CCGCTC	1 cut(s)	300
BsrDI	GCAATG	1 cut(s)	608
BsrFI	RCCGGY	1 cut(s)	209
BsrGI	TGTACA	1 cut(s)	444
BsrI	ACTGG	1 cut(s)	235
BssAI	RCCGGY	1 cut(s)	209
BssECI	CCNNGG	1 cut(s)	271
BssMI	GATC	1 cut(s)	466
Bst4CI	ACNGT	5 cut(s)	73, 257, 380, 674, 683
Bst6I	CTCTTC	2 cut(s)	110, 614
BstAUI	TGTACA	1 cut(s)	444
BstDEI	CTNAG	1 cut(s)	118
BstDSI	CCRYGG	1 cut(s)	271
BstF5I	GGATG	2 cut(s)	203, 318
BstFNI	CGCG	1 cut(s)	273
BstKTI	GATC	1 cut(s)	469
BstMAI	GTCTC	3 cut(s)	84, 155, 305
BstMBI	GATC	1 cut(s)	466
BstPAI	GACNNNNGTC	1 cut(s)	378
BstUI	CGCG	1 cut(s)	273
BsuRI	GGCC	2 cut(s)	41, 263
BtgI	CCRYGG	1 cut(s)	271
BtsCI	GGATG	2 cut(s)	203, 318
BtsIMutI	CAGTG	1 cut(s)	228
Cfr10I	RCCGGY	1 cut(s)	209
Cfr13I	GGNCC	1 cut(s)	262
Cfr42I	CCGCGG	1 cut(s)	274
Csp6I	GTAC	3 cut(s)	445, 589, 606
CspAI	ACCGGT	1 cut(s)	209
CspCI	CAANNNNNGTGG	2 cut(s)	196, 231
CviQI	GTAC	3 cut(s)	445, 589, 606
DdeI	CTNAG	1 cut(s)	118
DpnI	GATC	1 cut(s)	468
DpnII	GATC	1 cut(s)	466
DraI	TTTAAA	1 cut(s)	645
EaeI	YGGCCR	1 cut(s)	39
Eam1104I	CTCTTC	2 cut(s)	110, 614
EarI	CTCTTC	2 cut(s)	110, 614
Eco88I	CYCGRG	1 cut(s)	323
FaiI	YATR	7 cut(s)	44, 50, 65, 69, 367, 372, 729
FaqI	GGGAC	1 cut(s)	626
FauI	CCCGC	1 cut(s)	349
Fnu4HI	GCNGC	3 cut(s)	219, 271, 298
FokI	GGATG	2 cut(s)	190, 305
Fsp4HI	GCNGC	3 cut(s)	219, 271, 298
FspBI	CTAG	2 cut(s)	531, 596
GluI	GCNGC	3 cut(s)	219, 271, 298
HaeIII	GGCC	2 cut(s)	41, 263
HapII	CCGG	1 cut(s)	210
HincII	GTYRAC	1 cut(s)	253
HindII	GTYRAC	1 cut(s)	253
HindIII	AAGCTT	1 cut(s)	133
HinfI	GANTC	1 cut(s)	158
HpaII	CCGG	1 cut(s)	210
HphI	GGTGA	1 cut(s)	287
Hpy166II	GTNNAC	1 cut(s)	253
Hpy188I	TCNGA	5 cut(s)	121, 292, 336, 345, 575
Hpy188III	TCNNGA	3 cut(s)	308, 412, 427
Hpy8I	GTNNAC	1 cut(s)	253
Hpy99I	CGWCG	1 cut(s)	683
HpyAV	CCTTC	2 cut(s)	122, 683
HpyCH4III	ACNGT	5 cut(s)	73, 257, 380, 674, 683
HpyCH4IV	ACGT	3 cut(s)	249, 331, 450
HpyCH4V	TGCA	1 cut(s)	601
HpyF3I	CTNAG	1 cut(s)	118
HpySE526I	ACGT	3 cut(s)	249, 331, 450
KspI	CCGCGG	1 cut(s)	274
Kzo9I	GATC	1 cut(s)	466
LmnI	GCTCC	2 cut(s)	661, 711
LpnPI	CCDG	6 cut(s)	101, 216, 223, 418, 543, 554
LweI	GCATC	2 cut(s)	27, 268
MaeI	CTAG	2 cut(s)	531, 596
MaeII	ACGT	3 cut(s)	249, 331, 450
MaeIII	GTNAC	1 cut(s)	716
MalI	GATC	1 cut(s)	468
MbiI	CCGCTC	1 cut(s)	300
MboI	GATC	1 cut(s)	466
MboII	GAAGA	4 cut(s)	97, 400, 427, 631
MhlI	GDGCHC	1 cut(s)	119
MlsI	TGGCCA	1 cut(s)	41
MluCI	AATT	4 cut(s)	54, 403, 584, 651
MluNI	TGGCCA	1 cut(s)	41
MlyI	GAGTC	1 cut(s)	167
MnlI	CCTC	9 cut(s)	151, 232, 235, 292, 295, 298, 406, 603, 686
Mox20I	TGGCCA	1 cut(s)	41
MroXI	GAANNNNTTC	1 cut(s)	434
MscI	TGGCCA	1 cut(s)	41
MseI	TTAA	4 cut(s)	11, 503, 644, 747
Msp20I	TGGCCA	1 cut(s)	41
MspA1I	CMGCKG	1 cut(s)	273
MspI	CCGG	1 cut(s)	210
MvnI	CGCG	1 cut(s)	273
NdeII	GATC	1 cut(s)	466
NlaIV	GGNNCC	1 cut(s)	29
PdmI	GAANNNNTTC	1 cut(s)	434
PinAI	ACCGGT	1 cut(s)	209
PkrI	GCNGC	3 cut(s)	220, 272, 299
PleI	GAGTC	1 cut(s)	166
PpsI	GAGTC	1 cut(s)	166
PshAI	GACNNNNGTC	1 cut(s)	378
PspN4I	GGNNCC	1 cut(s)	29
PspPI	GGNCC	1 cut(s)	262
RsaI	GTAC	3 cut(s)	446, 590, 607
RsaNI	GTAC	3 cut(s)	445, 589, 606
SacII	CCGCGG	1 cut(s)	274
SaqAI	TTAA	4 cut(s)	11, 503, 644, 747
SatI	GCNGC	3 cut(s)	219, 271, 298
Sau3AI	GATC	1 cut(s)	466
Sau96I	GGNCC	1 cut(s)	262
SchI	GAGTC	1 cut(s)	167
SduI	GDGCHC	1 cut(s)	119
SfaNI	GCATC	2 cut(s)	27, 268
Sfr303I	CCGCGG	1 cut(s)	274
SgrBI	CCGCGG	1 cut(s)	274
SmlI	CTYRAG	1 cut(s)	308
SmoI	CTYRAG	1 cut(s)	308
SpeI	ACTAGT	1 cut(s)	595
Sse9I	AATT	4 cut(s)	54, 403, 584, 651
SsiI	CCGC	5 cut(s)	219, 271, 273, 298, 356
SspMI	CTAG	2 cut(s)	531, 596
TaaI	ACNGT	5 cut(s)	73, 257, 380, 674, 683
TaiI	ACGT	3 cut(s)	252, 334, 453
TaqI	TCGA	3 cut(s)	126, 398, 426
TasI	AATT	4 cut(s)	54, 403, 584, 651
TatI	WGTACW	1 cut(s)	444
TauI	GCSGC	3 cut(s)	221, 273, 300
Tru1I	TTAA	4 cut(s)	11, 503, 644, 747
Tru9I	TTAA	4 cut(s)	11, 503, 644, 747
TscAI	CASTG	1 cut(s)	235
TspGWI	ACGGA	1 cut(s)	606
TspRI	CASTG	1 cut(s)	235
XapI	RAATTY	1 cut(s)	54
XmnI	GAANNNNTTC	1 cut(s)	434
XspI	CTAG	2 cut(s)	531, 596

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.