Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0000899

Physical Location & Seq

Genomic Coordinates Reverse (-)

23893701 .. 23894438

Gene Structure 738 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG153200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGTTGTGCTTTAAAACAATCCCTCTAGGTTTCATAGTCTTCTGTCTTTTCATCCACTCATCCTTTGGTGCTTCCTCACTCAACCATTTATGTTTCAGCCATGAAAACTACACCGCCAATAGCACATATGATGCGCACTTGACTCGGTTATTCATCCTTTTACAGACCAAAGTTCCTCCCACCGGATTTGGCCTTGCTTCGACTGGTCAAGTCCAAAAGAAAGCAAATGGCCTTGCACTTTGCCGAGGCGATGCCTCAAGTGAAGATTGCACTACTTGTGTGGTTGATGCAAGCAAAGATATTAGAGAGTTCTGCCCGAACAGCAAAGGAGCCATAATATGGTATGACCACTGCCTCTTAAAGTACTCAAATGTGGACTTCTTTGGGAAAATTGATAACAAAAACAAGTTCTATATGTGGAACGTTCAAGAAGTACAGAATCCCACACTTTTCAATGAGAGAGTTAAGGAATTGTTGAGTGGATTAGCTGTTGAAGCTTCTGATGGTGGTGCTAATCCGAAGTTTTATGCAACTGGTGAGCTGCAACTTGATACATTCACAACACTATATGGTTTGGCTACATGCACAAGGGACCTCTCATCCCCAGATTGTAAGAAGTGTCTTGATGGTGCAATAAGTGAATTGCCAAACTGCTGCAATGCAAAGCGAGGTGGGCGCGTTGTGGGTGGGAGTTGTAATGTTGGATTTGAACTTTACCCAATTGTTGGGACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0030312 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071944 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1204 Stress-antifung

Protein Analysis

244

Amino Acids

26.68

Weight (kDa)

6.5

Isoelectric Point (pI)

32.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stress-antifung	PF01657	31 - 124	3.4e-22	Salt stress response/antifungal
Stress-antifung	PF01657	146 - 238	2.8e-11	Salt stress response/antifungal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000899)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22060
fragaria_vesca	FvH4_2g10161
malus_domestica	MD05G1056000.v1.1 MD05G1056300.v1.1 MD10G1064400.v1.1
prunus_persica	Prupe.3G109800_v2.0.a1 Prupe.3G110100_v2.0.a1 Prupe.3G110200_v2.0.a1 Prupe.3G110300_v2.0.a1 Prupe.8G086600_v2.0.a1
pyrus_communis	pycom05g04770 pycom05g04780
rosa_chinensis	RchiOBHm_Chr1g0328011 RchiOBHm_Chr1g0328031 RchiOBHm_Chr2g0158681 RchiOBHm_Chr2g0160231 RchiOBHm_Chr2g0160251
rosa_laevigata	RLG00000014015 RLG00000021106 RLG00000021206 RLG00000021207 RLG00000029943 RLG00000029944 RLG00000029946 RLG00000029948
rosa_multiflora	Rmu_co8269469.1_g000001 Rmu_co8408147.1_g000001 Rmu_sc0000403.1_g000003 Rmu_sc0008269.1_g000008 Rmu_sc0020806.1_g000002
rosa_roxburghii	Rroxscaffold_2G00091070 Rroxscaffold_2G00091110 Rroxscaffold_4G00321960 Rroxscaffold_4G00321970 Rroxscaffold_4G00321980 Rroxscaffold_4G00322000 Rroxscaffold_4G00322030 Rroxscaffold_7G00200860 Rroxscaffold_7G00200940
rosa_rugosa	Rorug01G0073200 Rorug01G0073200 Rorug01G0073300 Rorug02G0471400 Rorug02G0472000 Rorug02G0482400 Rorug02G0482400
rosa_samantha	Rh1BG071900 Rh1BG072100 Rh2AG537200 Rh2AG547800 Rh2BG550400 Rh2BG561200 Rh2BG561400 Rh2CG520900 Rh2CG531800 Rh2CG532100 Rh6AG153200 Rh6CG149000
rosa_wichuraiana	Rw0G019500 Rw1G006970 Rw1G006980 Rw1G006990 Rw2G044480 Rw2G045320 Rw6G013180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	135
AccB7I	CCANNNNNTGG	2 cut(s)	339, 725
AccII	CGCG	1 cut(s)	678
AciI	CCGC	1 cut(s)	114
AclI	AACGTT	1 cut(s)	423
AfaI	GTAC	2 cut(s)	365, 435
AfiI	CCNNNNNNNGG	3 cut(s)	182, 339, 725
AgsI	TTSAA	4 cut(s)	428, 454, 494, 710
AluBI	AGCT	3 cut(s)	488, 497, 541
AluI	AGCT	3 cut(s)	488, 497, 541
AoxI	GGCC	2 cut(s)	190, 229
ApeKI	GCWGC	2 cut(s)	541, 654
AspLEI	GCGC	2 cut(s)	136, 678
AspS9I	GGNCC	1 cut(s)	592
AsuHPI	GGTGA	1 cut(s)	548
AvaII	GGWCC	1 cut(s)	592
BbsI	GAAGAC	1 cut(s)	31
BbvI	GCAGC	2 cut(s)	528, 641
BccI	CCATC	2 cut(s)	497, 620
BcgI	CGANNNNNNTGC	2 cut(s)	125, 159
BfaI	CTAG	1 cut(s)	26
BisI	GCNGC	2 cut(s)	542, 655
BlsI	GCNGC	2 cut(s)	543, 656
BmcAI	AGTACT	1 cut(s)	365
Bme18I	GGWCC	1 cut(s)	592
BmgT120I	GGNCC	1 cut(s)	592
BmiI	GGNNCC	2 cut(s)	331, 593
BmsI	GCATC	3 cut(s)	121, 241, 277
BpiI	GAAGAC	1 cut(s)	31
BpuEI	CTTGAG	1 cut(s)	241
BsaJI	CCNNGG	1 cut(s)	244
BsaWI	WCCGGW	1 cut(s)	182
Bsc4I	CCNNNNNNNGG	3 cut(s)	182, 339, 725
Bse1I	ACTGG	2 cut(s)	208, 538
Bse3DI	GCAATG	1 cut(s)	664
BseDI	CCNNGG	1 cut(s)	244
BseGI	GGATG	4 cut(s)	51, 59, 153, 599
BseLI	CCNNNNNNNGG	3 cut(s)	182, 339, 725
BseMI	GCAATG	1 cut(s)	664
BseNI	ACTGG	2 cut(s)	208, 538
BseXI	GCAGC	2 cut(s)	528, 641
Bsh1236I	CGCG	1 cut(s)	678
BshFI	GGCC	2 cut(s)	192, 231
BsiSI	CCGG	1 cut(s)	183
BslFI	GGGAC	1 cut(s)	605
BslI	CCNNNNNNNGG	3 cut(s)	182, 339, 725
BsmFI	GGGAC	1 cut(s)	605
BsnI	GGCC	2 cut(s)	192, 231
BspACI	CCGC	1 cut(s)	114
BspANI	GGCC	2 cut(s)	192, 231
BspFNI	CGCG	1 cut(s)	678
BspLI	GGNNCC	2 cut(s)	331, 593
BsrDI	GCAATG	1 cut(s)	664
BsrI	ACTGG	2 cut(s)	208, 538
BssECI	CCNNGG	1 cut(s)	244
BstC8I	GCNNGC	1 cut(s)	292
BstF5I	GGATG	4 cut(s)	51, 59, 153, 599
BstFNI	CGCG	1 cut(s)	678
BstHHI	GCGC	2 cut(s)	136, 678
BstMWI	GCNNNNNNNGC	3 cut(s)	321, 494, 673
BstNSI	RCATGY	1 cut(s)	585
BstUI	CGCG	1 cut(s)	678
BstV1I	GCAGC	2 cut(s)	528, 641
BstV2I	GAAGAC	1 cut(s)	31
BsuRI	GGCC	2 cut(s)	192, 231
BtgZI	GCGATG	1 cut(s)	264
BtsCI	GGATG	4 cut(s)	51, 59, 153, 599
BtsI	GCAGTG	1 cut(s)	349
BtsIMutI	CAGTG	1 cut(s)	349
Cac8I	GCNNGC	1 cut(s)	292
CfoI	GCGC	2 cut(s)	136, 678
Cfr13I	GGNCC	1 cut(s)	592
Csp6I	GTAC	2 cut(s)	364, 434
CspCI	CAANNNNNGTGG	2 cut(s)	169, 204
CviAII	CATG	2 cut(s)	101, 582
CviJI	RGCY	8 cut(s)	99, 192, 231, 332, 488, 497, 541, 578
CviKI_1	RGCY	8 cut(s)	99, 192, 231, 332, 488, 497, 541, 578
CviQI	GTAC	2 cut(s)	364, 434
DraI	TTTAAA	1 cut(s)	13
Eco47I	GGWCC	1 cut(s)	592
EcoO109I	RGGNCCY	1 cut(s)	592
FaeI	CATG	2 cut(s)	104, 585
FaqI	GGGAC	1 cut(s)	605
FatI	CATG	2 cut(s)	100, 581
FauNDI	CATATG	1 cut(s)	127
Fnu4HI	GCNGC	2 cut(s)	542, 655
FokI	GGATG	4 cut(s)	38, 46, 140, 586
Fsp4HI	GCNGC	2 cut(s)	542, 655
FspAI	RTGCGCAY	1 cut(s)	135
FspBI	CTAG	1 cut(s)	26
FspI	TGCGCA	1 cut(s)	135
GlaI	GCGC	2 cut(s)	135, 677
GluI	GCNGC	2 cut(s)	542, 655
HaeIII	GGCC	2 cut(s)	192, 231
HapII	CCGG	1 cut(s)	183
HhaI	GCGC	2 cut(s)	136, 678
Hin1II	CATG	2 cut(s)	104, 585
Hin6I	GCGC	2 cut(s)	134, 676
HinP1I	GCGC	2 cut(s)	134, 676
HindIII	AAGCTT	1 cut(s)	495
HinfI	GANTC	2 cut(s)	142, 439
HpaII	CCGG	1 cut(s)	183
HphI	GGTGA	1 cut(s)	548
Hpy166II	GTNNAC	1 cut(s)	376
Hpy188I	TCNGA	2 cut(s)	502, 519
Hpy188III	TCNNGA	2 cut(s)	428, 623
Hpy8I	GTNNAC	1 cut(s)	376
HpyCH4IV	ACGT	1 cut(s)	423
HpyCH4V	TGCA	9 cut(s)	236, 270, 290, 530, 544, 585, 632, 657, 662
HpyF10VI	GCNNNNNNNGC	3 cut(s)	321, 494, 673
HpySE526I	ACGT	1 cut(s)	423
Hsp92II	CATG	2 cut(s)	104, 585
HspAI	GCGC	2 cut(s)	134, 676
LmnI	GCTCC	1 cut(s)	329
LpnPI	CCDG	4 cut(s)	189, 196, 519, 618
Lsp1109I	GCAGC	2 cut(s)	528, 641
LweI	GCATC	3 cut(s)	121, 241, 277
MaeI	CTAG	1 cut(s)	26
MaeII	ACGT	1 cut(s)	423
MboII	GAAGA	2 cut(s)	31, 275
MfeI	CAATTG	1 cut(s)	720
MluCI	AATT	4 cut(s)	390, 470, 641, 720
MlyI	GAGTC	1 cut(s)	136
MmeI	TCCRAC	1 cut(s)	682
MnlI	CCTC	8 cut(s)	33, 85, 186, 239, 265, 365, 605, 662
MseI	TTAA	3 cut(s)	12, 359, 465
MspI	CCGG	1 cut(s)	183
MunI	CAATTG	1 cut(s)	720
MvnI	CGCG	1 cut(s)	678
MwoI	GCNNNNNNNGC	3 cut(s)	321, 494, 673
NdeI	CATATG	1 cut(s)	127
NlaIII	CATG	2 cut(s)	104, 585
NlaIV	GGNNCC	2 cut(s)	331, 593
NmeAIII	GCCGAG	1 cut(s)	269
NsbI	TGCGCA	1 cut(s)	135
NspI	RCATGY	1 cut(s)	585
PfeI	GAWTC	1 cut(s)	439
PflMI	CCANNNNNTGG	2 cut(s)	339, 725
PkrI	GCNGC	2 cut(s)	543, 656
PleI	GAGTC	1 cut(s)	136
PpsI	GAGTC	1 cut(s)	136
PpuMI	RGGWCCY	1 cut(s)	592
Psp1406I	AACGTT	1 cut(s)	423
Psp5II	RGGWCCY	1 cut(s)	592
PspN4I	GGNNCC	2 cut(s)	331, 593
PspPI	GGNCC	1 cut(s)	592
PspPPI	RGGWCCY	1 cut(s)	592
RsaI	GTAC	2 cut(s)	365, 435
RsaNI	GTAC	2 cut(s)	364, 434
SaqAI	TTAA	3 cut(s)	12, 359, 465
SatI	GCNGC	2 cut(s)	542, 655
Sau96I	GGNCC	1 cut(s)	592
ScaI	AGTACT	1 cut(s)	365
SchI	GAGTC	1 cut(s)	136
SetI	ASST	7 cut(s)	31, 426, 490, 499, 543, 597, 673
SfaNI	GCATC	3 cut(s)	121, 241, 277
SinI	GGWCC	1 cut(s)	592
SmlI	CTYRAG	1 cut(s)	256
SmoI	CTYRAG	1 cut(s)	256
Sse9I	AATT	4 cut(s)	390, 470, 641, 720
SsiI	CCGC	1 cut(s)	114
SspMI	CTAG	1 cut(s)	26
TaiI	ACGT	1 cut(s)	426
TaqI	TCGA	1 cut(s)	200
TasI	AATT	4 cut(s)	390, 470, 641, 720
TatI	WGTACW	2 cut(s)	363, 433
TfiI	GAWTC	1 cut(s)	439
Tru1I	TTAA	3 cut(s)	12, 359, 465
Tru9I	TTAA	3 cut(s)	12, 359, 465
TscAI	CASTG	1 cut(s)	356
TseI	GCWGC	2 cut(s)	541, 654
TspDTI	ATGAA	4 cut(s)	22, 40, 117, 142
TspRI	CASTG	1 cut(s)	356
Van91I	CCANNNNNTGG	2 cut(s)	339, 725
VpaK11BI	GGWCC	1 cut(s)	592
XceI	RCATGY	1 cut(s)	585
XcmI	CCANNNNNNNNNTGG	1 cut(s)	62
XspI	CTAG	1 cut(s)	26
ZrmI	AGTACT	1 cut(s)	365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.