Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0000899

Physical Location & Seq

Genomic Coordinates Forward (+)

9015014 .. 9015914

Gene Structure 901 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G110100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGTTCTCCAAATCAATCCCTCTCTTTTTCTTACTCTTCTGTCTTTTACACCATGCAGCGCTTGGTGCTTCGCCACTTTTCCATTTTTGTTTCAGCAAAGAAAACTACACTGCCAATAGCCCATATGGTGCTAACTTGATTCAGCTGTTCAATCTTCTGTATACAAAAGTTCCTCCTACTGGATTTGGCCTTGGATCAACTGGTGAAGGCCAAAACCAAGCGAATGGGCTAGCCCTATGTCGTGGGGACGTCTCAAGCCAAGATTGCAAGACTTGTGTCGTTGAGGCAAGCAAAGAGCTTGGTGAGCGCTGCCCTAGTAGAAAAGGAGCCATAATATGGTACGACAACTGCCTGTTCAAGTACTCAAATGTGAATTTTGCTGGGAAAATTGATAACAACAACAGGTTTTATATGTGGAATGTCCAAGAAGTAGATGATCCCAAGCCATTCAATGCGAAAGTTGAGGAATTGTTAAGCGGGTTATCTACTAAAGCTTCTTCTAACCCAAAGTTTTATGCTACTGGTGAGCTAGAGCTCAGCTCATCAGAAACGCTATATGGTTTGACTCAATGCACGAGGGACCTCTCTAGTTCCGATTGTAAGAAGTGTCTTGATGGTGCAATAAGCGAATTACCAAATTGTTGTGATGCAAAACGAGGTGGGCGTGTTGTGGGTGGGAGTTGTAACTTTCGATATGAACTTTACCCCATTGTTGATCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0030312 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071944 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1204 Stress-antifung

Protein Analysis

241

Amino Acids

26.39

Weight (kDa)

6.31

Isoelectric Point (pI)

30.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000899)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22060
fragaria_vesca	FvH4_2g10161
malus_domestica	MD05G1056000.v1.1 MD05G1056300.v1.1 MD10G1064400.v1.1
prunus_persica	Prupe.3G109800_v2.0.a1 Prupe.3G110100_v2.0.a1 Prupe.3G110200_v2.0.a1 Prupe.3G110300_v2.0.a1 Prupe.8G086600_v2.0.a1
pyrus_communis	pycom05g04770 pycom05g04780
rosa_chinensis	RchiOBHm_Chr1g0328011 RchiOBHm_Chr1g0328031 RchiOBHm_Chr2g0158681 RchiOBHm_Chr2g0160231 RchiOBHm_Chr2g0160251
rosa_laevigata	RLG00000014015 RLG00000021106 RLG00000021206 RLG00000021207 RLG00000029943 RLG00000029944 RLG00000029946 RLG00000029948
rosa_multiflora	Rmu_co8269469.1_g000001 Rmu_co8408147.1_g000001 Rmu_sc0000403.1_g000003 Rmu_sc0008269.1_g000008 Rmu_sc0020806.1_g000002
rosa_roxburghii	Rroxscaffold_2G00091070 Rroxscaffold_2G00091110 Rroxscaffold_4G00321960 Rroxscaffold_4G00321970 Rroxscaffold_4G00321980 Rroxscaffold_4G00322000 Rroxscaffold_4G00322030 Rroxscaffold_7G00200860 Rroxscaffold_7G00200940
rosa_rugosa	Rorug01G0073200 Rorug01G0073200 Rorug01G0073300 Rorug02G0471400 Rorug02G0472000 Rorug02G0482400 Rorug02G0482400
rosa_samantha	Rh1BG071900 Rh1BG072100 Rh2AG537200 Rh2AG547800 Rh2BG550400 Rh2BG561200 Rh2BG561400 Rh2CG520900 Rh2CG531800 Rh2CG532100 Rh6AG153200 Rh6CG149000
rosa_wichuraiana	Rw0G019500 Rw1G006970 Rw1G006980 Rw1G006990 Rw2G044480 Rw2G045320 Rw6G013180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	252
AccB7I	CCANNNNNTGG	1 cut(s)	336
AccI	GTMKAC	1 cut(s)	161
AciI	CCGC	1 cut(s)	477
AclWI	GGATC	3 cut(s)	202, 431, 710
AcsI	RAATTY	1 cut(s)	373
AcyI	GRCGYC	1 cut(s)	249
AfaI	GTAC	2 cut(s)	341, 362
AfeI	AGCGCT	2 cut(s)	60, 308
AfiI	CCNNNNNNNGG	2 cut(s)	179, 336
AgsI	TTSAA	3 cut(s)	151, 358, 451
AluBI	AGCT	6 cut(s)	145, 298, 494, 529, 535, 540
AluI	AGCT	6 cut(s)	145, 298, 494, 529, 535, 540
Alw21I	GWGCWC	1 cut(s)	537
Alw26I	GTCTC	1 cut(s)	256
AlwI	GGATC	3 cut(s)	202, 431, 710
Aor51HI	AGCGCT	2 cut(s)	60, 308
AoxI	GGCC	2 cut(s)	187, 208
ApeKI	GCWGC	2 cut(s)	56, 309
ApoI	RAATTY	1 cut(s)	373
AspLEI	GCGC	2 cut(s)	61, 309
AspS9I	GGNCC	1 cut(s)	580
AsuHPI	GGTGA	3 cut(s)	215, 314, 536
AsuNHI	GCTAGC	1 cut(s)	229
AvaII	GGWCC	1 cut(s)	580
BanII	GRGCYC	1 cut(s)	537
BauI	CACGAG	1 cut(s)	574
Bbv12I	GWGCWC	1 cut(s)	537
BbvI	GCAGC	2 cut(s)	68, 296
BccI	CCATC	1 cut(s)	608
BcoDI	GTCTC	1 cut(s)	256
BfaI	CTAG	4 cut(s)	230, 315, 530, 588
BfoI	RGCGCY	2 cut(s)	62, 310
BisI	GCNGC	2 cut(s)	57, 310
BlpI	GCTNAGC	1 cut(s)	536
BlsI	GCNGC	2 cut(s)	58, 311
BmcAI	AGTACT	1 cut(s)	362
Bme18I	GGWCC	1 cut(s)	580
BmgT120I	GGNCC	1 cut(s)	580
BmiI	GGNNCC	2 cut(s)	328, 581
BmsI	GCATC	1 cut(s)	637
BmtI	GCTAGC	1 cut(s)	233
BoxI	GACNNNNGTC	1 cut(s)	275
BplI	GAGNNNNNCTC	2 cut(s)	524, 556
Bpu1102I	GCTNAGC	1 cut(s)	536
BpuEI	CTTGAG	1 cut(s)	238
BsaHI	GRCGYC	1 cut(s)	249
BsaJI	CCNNGG	1 cut(s)	190
Bsc4I	CCNNNNNNNGG	2 cut(s)	179, 336
Bse1I	ACTGG	3 cut(s)	184, 205, 526
BseDI	CCNNGG	1 cut(s)	190
BseLI	CCNNNNNNNGG	2 cut(s)	179, 336
BseMII	CTCAG	1 cut(s)	550
BseNI	ACTGG	3 cut(s)	184, 205, 526
BseXI	GCAGC	2 cut(s)	68, 296
BseYI	CCCAGC	1 cut(s)	380
BshFI	GGCC	2 cut(s)	189, 210
BsiHKAI	GWGCWC	1 cut(s)	537
BslFI	GGGAC	2 cut(s)	260, 593
BslI	CCNNNNNNNGG	2 cut(s)	179, 336
BsmAI	GTCTC	1 cut(s)	256
BsmBI	CGTCTC	1 cut(s)	256
BsmFI	GGGAC	2 cut(s)	260, 593
BsnI	GGCC	2 cut(s)	189, 210
Bsp1286I	GDGCHC	1 cut(s)	537
Bsp143I	GATC	3 cut(s)	194, 436, 715
Bsp1720I	GCTNAGC	1 cut(s)	536
BspACI	CCGC	1 cut(s)	477
BspANI	GGCC	2 cut(s)	189, 210
BspCNI	CTCAG	1 cut(s)	549
BspLI	GGNNCC	2 cut(s)	328, 581
BspOI	GCTAGC	1 cut(s)	233
BspPI	GGATC	3 cut(s)	202, 431, 710
BsrI	ACTGG	3 cut(s)	184, 205, 526
BssECI	CCNNGG	1 cut(s)	190
BssMI	GATC	3 cut(s)	194, 436, 715
BssNAI	GTATAC	1 cut(s)	162
BssNI	GRCGYC	1 cut(s)	249
BssSI	CACGAG	1 cut(s)	574
BssT1I	CCWWGG	1 cut(s)	190
Bst1107I	GTATAC	1 cut(s)	162
Bst2BI	CACGAG	1 cut(s)	574
Bst6I	CTCTTC	1 cut(s)	41
BstACI	GRCGYC	1 cut(s)	249
BstC8I	GCNNGC	2 cut(s)	231, 289
BstDEI	CTNAG	1 cut(s)	536
BstH2I	RGCGCY	2 cut(s)	62, 310
BstHHI	GCGC	2 cut(s)	61, 309
BstKTI	GATC	3 cut(s)	197, 439, 718
BstMAI	GTCTC	1 cut(s)	256
BstMBI	GATC	3 cut(s)	194, 436, 715
BstMWI	GCNNNNNNNGC	3 cut(s)	65, 264, 304
BstPAI	GACNNNNGTC	1 cut(s)	275
BstV1I	GCAGC	2 cut(s)	68, 296
BstXI	CCANNNNNNTGG	1 cut(s)	224
BstZ17I	GTATAC	1 cut(s)	162
BsuRI	GGCC	2 cut(s)	189, 210
BtsI	GCAGTG	1 cut(s)	108
BtsIMutI	CAGTG	1 cut(s)	108
Cac8I	GCNNGC	2 cut(s)	231, 289
CfoI	GCGC	2 cut(s)	61, 309
Cfr13I	GGNCC	1 cut(s)	580
Csp6I	GTAC	2 cut(s)	340, 361
CviAII	CATG	1 cut(s)	53
CviQI	GTAC	2 cut(s)	340, 361
DdeI	CTNAG	1 cut(s)	536
DpnI	GATC	3 cut(s)	196, 438, 717
DpnII	GATC	3 cut(s)	194, 436, 715
Eam1104I	CTCTTC	1 cut(s)	41
EarI	CTCTTC	1 cut(s)	41
Ecl136II	GAGCTC	1 cut(s)	535
Eco130I	CCWWGG	1 cut(s)	190
Eco24I	GRGCYC	1 cut(s)	537
Eco47I	GGWCC	1 cut(s)	580
Eco47III	AGCGCT	2 cut(s)	60, 308
Eco53kI	GAGCTC	1 cut(s)	535
EcoICRI	GAGCTC	1 cut(s)	535
EcoO109I	RGGNCCY	1 cut(s)	580
EcoT14I	CCWWGG	1 cut(s)	190
EcoT38I	GRGCYC	1 cut(s)	537
ErhI	CCWWGG	1 cut(s)	190
Esp3I	CGTCTC	1 cut(s)	256
FaeI	CATG	1 cut(s)	56
FaqI	GGGAC	2 cut(s)	260, 593
FatI	CATG	1 cut(s)	52
FauI	CCCGC	1 cut(s)	470
FauNDI	CATATG	1 cut(s)	124
FblI	GTMKAC	1 cut(s)	161
Fnu4HI	GCNGC	2 cut(s)	57, 310
FriOI	GRGCYC	1 cut(s)	537
Fsp4HI	GCNGC	2 cut(s)	57, 310
FspBI	CTAG	4 cut(s)	230, 315, 530, 588
GlaI	GCGC	2 cut(s)	60, 308
GluI	GCNGC	2 cut(s)	57, 310
GsaI	CCCAGC	1 cut(s)	384
HaeII	RGCGCY	2 cut(s)	62, 310
HaeIII	GGCC	2 cut(s)	189, 210
HhaI	GCGC	2 cut(s)	61, 309
Hin1I	GRCGYC	1 cut(s)	249
Hin1II	CATG	1 cut(s)	56
Hin6I	GCGC	2 cut(s)	59, 307
HinP1I	GCGC	2 cut(s)	59, 307
HindIII	AAGCTT	1 cut(s)	492
HinfI	GANTC	2 cut(s)	139, 565
HphI	GGTGA	3 cut(s)	215, 314, 536
Hpy166II	GTNNAC	1 cut(s)	162
Hpy188I	TCNGA	2 cut(s)	547, 595
Hpy188III	TCNNGA	1 cut(s)	611
Hpy8I	GTNNAC	1 cut(s)	162
HpyAV	CCTTC	1 cut(s)	200
HpyCH4IV	ACGT	1 cut(s)	249
HpyCH4V	TGCA	5 cut(s)	56, 267, 573, 620, 650
HpyF10VI	GCNNNNNNNGC	3 cut(s)	65, 264, 304
HpyF3I	CTNAG	1 cut(s)	536
HpySE526I	ACGT	1 cut(s)	249
Hsp92I	GRCGYC	1 cut(s)	249
Hsp92II	CATG	1 cut(s)	56
HspAI	GCGC	2 cut(s)	59, 307
Kzo9I	GATC	3 cut(s)	194, 436, 715
LmnI	GCTCC	1 cut(s)	326
LpnPI	CCDG	6 cut(s)	165, 186, 365, 366, 388, 507
Lsp1109I	GCAGC	2 cut(s)	68, 296
LweI	GCATC	1 cut(s)	637
MaeI	CTAG	4 cut(s)	230, 315, 530, 588
MaeII	ACGT	1 cut(s)	249
MaeIII	GTNAC	1 cut(s)	683
MalI	GATC	3 cut(s)	196, 438, 717
MboI	GATC	3 cut(s)	194, 436, 715
MboII	GAAGA	3 cut(s)	28, 146, 489
MhlI	GDGCHC	1 cut(s)	537
MluCI	AATT	5 cut(s)	373, 387, 467, 629, 637
MlyI	GAGTC	1 cut(s)	559
MnlI	CCTC	7 cut(s)	30, 183, 277, 457, 570, 593, 650
MseI	TTAA	2 cut(s)	473, 721
MspA1I	CMGCKG	1 cut(s)	145
MwoI	GCNNNNNNNGC	3 cut(s)	65, 264, 304
NdeI	CATATG	1 cut(s)	124
NdeII	GATC	3 cut(s)	194, 436, 715
NheI	GCTAGC	1 cut(s)	229
NlaIII	CATG	1 cut(s)	56
NlaIV	GGNNCC	2 cut(s)	328, 581
PcsI	WCGNNNNNNNCGW	1 cut(s)	661
PfeI	GAWTC	1 cut(s)	139
PflMI	CCANNNNNTGG	1 cut(s)	336
PkrI	GCNGC	2 cut(s)	58, 311
PleI	GAGTC	1 cut(s)	559
PpsI	GAGTC	1 cut(s)	559
PpuMI	RGGWCCY	1 cut(s)	580
PshAI	GACNNNNGTC	1 cut(s)	275
Psp124BI	GAGCTC	1 cut(s)	537
Psp5II	RGGWCCY	1 cut(s)	580
PspFI	CCCAGC	1 cut(s)	380
PspN4I	GGNNCC	2 cut(s)	328, 581
PspPI	GGNCC	1 cut(s)	580
PspPPI	RGGWCCY	1 cut(s)	580
PvuII	CAGCTG	1 cut(s)	145
RsaI	GTAC	2 cut(s)	341, 362
RsaNI	GTAC	2 cut(s)	340, 361
SacI	GAGCTC	1 cut(s)	537
SaqAI	TTAA	2 cut(s)	473, 721
SatI	GCNGC	2 cut(s)	57, 310
Sau3AI	GATC	3 cut(s)	194, 436, 715
Sau96I	GGNCC	1 cut(s)	580
ScaI	AGTACT	1 cut(s)	362
SchI	GAGTC	1 cut(s)	559
SduI	GDGCHC	1 cut(s)	537
SfaNI	GCATC	1 cut(s)	637
SinI	GGWCC	1 cut(s)	580
SmlI	CTYRAG	1 cut(s)	253
SmoI	CTYRAG	1 cut(s)	253
Sse9I	AATT	5 cut(s)	373, 387, 467, 629, 637
SsiI	CCGC	1 cut(s)	477
SspMI	CTAG	4 cut(s)	230, 315, 530, 588
SstI	GAGCTC	1 cut(s)	537
StyI	CCWWGG	1 cut(s)	190
TaiI	ACGT	1 cut(s)	252
TaqI	TCGA	1 cut(s)	691
TasI	AATT	5 cut(s)	373, 387, 467, 629, 637
TatI	WGTACW	1 cut(s)	360
TfiI	GAWTC	1 cut(s)	139
Tru1I	TTAA	2 cut(s)	473, 721
Tru9I	TTAA	2 cut(s)	473, 721
TscAI	CASTG	1 cut(s)	115
TseI	GCWGC	2 cut(s)	56, 309
TspDTI	ATGAA	1 cut(s)	711
TspRI	CASTG	1 cut(s)	115
Van91I	CCANNNNNTGG	1 cut(s)	336
VpaK11BI	GGWCC	1 cut(s)	580
XapI	RAATTY	1 cut(s)	373
XcmI	CCANNNNNNNNNTGG	1 cut(s)	59
XmiI	GTMKAC	1 cut(s)	161
XspI	CTAG	4 cut(s)	230, 315, 530, 588
ZraI	GACGTC	1 cut(s)	250
ZrmI	AGTACT	1 cut(s)	362

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.