Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0000899

Physical Location & Seq

Genomic Coordinates Reverse (-)

9876321 .. 9877052

Gene Structure 732 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1056300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGTTCATCTCCAAATCAATCCCTCTGTGTCTCTTAGTCCTATGTCTTTACCACCATTCAGCCATTGGTGCTTCCCCACTTTCCCATTCTTGTTTCAGCCCTGAAAACTACACTGCCAATAGTCCCTATGGTGCTAACTTAAACTTACTCTTCAATCTTTTATACACCAAAGTTCCTCCTACTGGCTTTGCCCTTGATTCGACTGGCCATGGCCAAAACCTAGTCCACGGCATGGCTCTATGCCGTGGTGATGTCTCAGAAAAAAACTGCAATACTTGCGTGGCTGACGCCGGTAAAGAGCTCCGTCAACGGTGTGCTTATAGCAAAGGAGCCGTTATTTGGTACGATCACTGCCTCTTAAAGTACTCGGATGTGAGCTTCTTTGGACAGATTGATTATGCGACTAGGTTCTCTATGTCGAACGTCCGAGAAGTAGATCAGAATGGAACACTATTCAATGAGAAAGTTAAAGAGTTGTTAAGCGAGTTATCTAATGAAGCTTCTGATGCTAATCCAAAGCTTTATGCTACCGGTGAGCTACAACTCGATACAGTCACAACGTTGTATGGTATTGCTCAATGCACAAGGGACCTCTCTGGCGTTAATTGTAAGAAGTGTCTTGATGGTGCAATAAGTGAACTGCCTAACTGTTGCGGTGCAAAACTAGGTGGTCGTGTTGTTGGTGGGAGTTGCAATGTTGGTTTTGAACTATATCCCATTGTTGGTACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0030312 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071944 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1204 Stress-antifung

Protein Analysis

244

Amino Acids

26.26

Weight (kDa)

6.05

Isoelectric Point (pI)

24.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stress-antifung	PF01657	31 - 124	2.2e-22	Salt stress response/antifungal
Stress-antifung	PF01657	147 - 237	1.5e-11	Salt stress response/antifungal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000899)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22060
fragaria_vesca	FvH4_2g10161
malus_domestica	MD05G1056000.v1.1 MD05G1056300.v1.1 MD10G1064400.v1.1
prunus_persica	Prupe.3G109800_v2.0.a1 Prupe.3G110100_v2.0.a1 Prupe.3G110200_v2.0.a1 Prupe.3G110300_v2.0.a1 Prupe.8G086600_v2.0.a1
pyrus_communis	pycom05g04770 pycom05g04780
rosa_chinensis	RchiOBHm_Chr1g0328011 RchiOBHm_Chr1g0328031 RchiOBHm_Chr2g0158681 RchiOBHm_Chr2g0160231 RchiOBHm_Chr2g0160251
rosa_laevigata	RLG00000014015 RLG00000021106 RLG00000021206 RLG00000021207 RLG00000029943 RLG00000029944 RLG00000029946 RLG00000029948
rosa_multiflora	Rmu_co8269469.1_g000001 Rmu_co8408147.1_g000001 Rmu_sc0000403.1_g000003 Rmu_sc0008269.1_g000008 Rmu_sc0020806.1_g000002
rosa_roxburghii	Rroxscaffold_2G00091070 Rroxscaffold_2G00091110 Rroxscaffold_4G00321960 Rroxscaffold_4G00321970 Rroxscaffold_4G00321980 Rroxscaffold_4G00322000 Rroxscaffold_4G00322030 Rroxscaffold_7G00200860 Rroxscaffold_7G00200940
rosa_rugosa	Rorug01G0073200 Rorug01G0073200 Rorug01G0073300 Rorug02G0471400 Rorug02G0472000 Rorug02G0482400 Rorug02G0482400
rosa_samantha	Rh1BG071900 Rh1BG072100 Rh2AG537200 Rh2AG547800 Rh2BG550400 Rh2BG561200 Rh2BG561400 Rh2CG520900 Rh2CG531800 Rh2CG532100 Rh6AG153200 Rh6CG149000
rosa_wichuraiana	Rw0G019500 Rw1G006970 Rw1G006980 Rw1G006990 Rw2G044480 Rw2G045320 Rw6G013180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	232
AciI	CCGC	1 cut(s)	654
AclI	AACGTT	1 cut(s)	560
AcoI	YGGCCR	2 cut(s)	205, 211
AcyI	GRCGYC	1 cut(s)	288
AfaI	GTAC	3 cut(s)	344, 365, 727
AfiI	CCNNNNNNNGG	4 cut(s)	182, 232, 339, 722
AgeI	ACCGGT	1 cut(s)	530
AgsI	TTSAA	3 cut(s)	154, 457, 707
AluBI	AGCT	5 cut(s)	301, 378, 500, 520, 538
AluI	AGCT	5 cut(s)	301, 378, 500, 520, 538
Alw21I	GWGCWC	1 cut(s)	303
Alw26I	GTCTC	2 cut(s)	35, 259
AoxI	GGCC	2 cut(s)	205, 211
AsiGI	ACCGGT	1 cut(s)	530
AspS9I	GGNCC	1 cut(s)	589
AsuHPI	GGTGA	2 cut(s)	260, 545
AvaII	GGWCC	1 cut(s)	589
BalI	TGGCCA	2 cut(s)	207, 213
BanII	GRGCYC	1 cut(s)	303
Bbv12I	GWGCWC	1 cut(s)	303
BccI	CCATC	1 cut(s)	617
BceAI	ACGGC	3 cut(s)	228, 244, 317
BcoDI	GTCTC	2 cut(s)	35, 259
BfaI	CTAG	3 cut(s)	221, 405, 665
BmcAI	AGTACT	1 cut(s)	365
Bme18I	GGWCC	1 cut(s)	589
BmgT120I	GGNCC	1 cut(s)	589
BmiI	GGNNCC	2 cut(s)	331, 590
BmsI	GCATC	1 cut(s)	496
BsaBI	GATNNNNATC	1 cut(s)	510
BsaHI	GRCGYC	1 cut(s)	288
BsaJI	CCNNGG	3 cut(s)	208, 226, 244
BsaWI	WCCGGW	1 cut(s)	530
Bsc4I	CCNNNNNNNGG	4 cut(s)	182, 232, 339, 722
Bse118I	RCCGGY	2 cut(s)	290, 530
Bse1I	ACTGG	2 cut(s)	187, 208
Bse3DI	GCAATG	1 cut(s)	700
Bse8I	GATNNNNATC	1 cut(s)	510
BseDI	CCNNGG	3 cut(s)	208, 226, 244
BseGI	GGATG	1 cut(s)	376
BseJI	GATNNNNATC	1 cut(s)	510
BseLI	CCNNNNNNNGG	4 cut(s)	182, 232, 339, 722
BseMI	GCAATG	1 cut(s)	700
BseMII	CTCAG	1 cut(s)	270
BseNI	ACTGG	2 cut(s)	187, 208
BshFI	GGCC	2 cut(s)	207, 213
BshTI	ACCGGT	1 cut(s)	530
BsiHKAI	GWGCWC	1 cut(s)	303
BsiSI	CCGG	2 cut(s)	291, 531
BslFI	GGGAC	2 cut(s)	108, 602
BslI	CCNNNNNNNGG	4 cut(s)	182, 232, 339, 722
BsmAI	GTCTC	2 cut(s)	35, 259
BsmFI	GGGAC	2 cut(s)	108, 602
BsnI	GGCC	2 cut(s)	207, 213
Bsp1286I	GDGCHC	1 cut(s)	303
Bsp143I	GATC	2 cut(s)	346, 436
Bsp19I	CCATGG	1 cut(s)	208
BspACI	CCGC	1 cut(s)	654
BspANI	GGCC	2 cut(s)	207, 213
BspCNI	CTCAG	1 cut(s)	269
BspLI	GGNNCC	2 cut(s)	331, 590
BsrDI	GCAATG	1 cut(s)	700
BsrFI	RCCGGY	2 cut(s)	290, 530
BsrI	ACTGG	2 cut(s)	187, 208
BssAI	RCCGGY	2 cut(s)	290, 530
BssECI	CCNNGG	3 cut(s)	208, 226, 244
BssMI	GATC	2 cut(s)	346, 436
BssNI	GRCGYC	1 cut(s)	288
BssT1I	CCWWGG	1 cut(s)	208
Bst4CI	ACNGT	3 cut(s)	312, 553, 650
Bst6I	CTCTTC	1 cut(s)	155
BstACI	GRCGYC	1 cut(s)	288
BstAPI	GCANNNNNTGC	1 cut(s)	276
BstDEI	CTNAG	3 cut(s)	34, 256, 729
BstDSI	CCRYGG	3 cut(s)	208, 226, 244
BstF5I	GGATG	1 cut(s)	376
BstKTI	GATC	2 cut(s)	349, 439
BstMAI	GTCTC	2 cut(s)	35, 259
BstMBI	GATC	2 cut(s)	346, 436
BstMWI	GCNNNNNNNGC	3 cut(s)	68, 276, 506
BsuRI	GGCC	2 cut(s)	207, 213
BtgI	CCRYGG	3 cut(s)	208, 226, 244
BtsCI	GGATG	1 cut(s)	376
BtsI	GCAGTG	2 cut(s)	111, 349
BtsIMutI	CAGTG	2 cut(s)	111, 349
Cfr10I	RCCGGY	2 cut(s)	290, 530
Cfr13I	GGNCC	1 cut(s)	589
CseI	GACGC	1 cut(s)	296
Csp6I	GTAC	3 cut(s)	343, 364, 726
CspAI	ACCGGT	1 cut(s)	530
CviAII	CATG	2 cut(s)	209, 232
CviQI	GTAC	3 cut(s)	343, 364, 726
DdeI	CTNAG	3 cut(s)	34, 256, 729
DpnI	GATC	2 cut(s)	348, 438
DpnII	GATC	2 cut(s)	346, 436
EaeI	YGGCCR	2 cut(s)	205, 211
Eam1104I	CTCTTC	1 cut(s)	155
EarI	CTCTTC	1 cut(s)	155
Ecl136II	GAGCTC	1 cut(s)	301
Eco130I	CCWWGG	1 cut(s)	208
Eco24I	GRGCYC	1 cut(s)	303
Eco47I	GGWCC	1 cut(s)	589
Eco53kI	GAGCTC	1 cut(s)	301
EcoICRI	GAGCTC	1 cut(s)	301
EcoO109I	RGGNCCY	1 cut(s)	589
EcoT14I	CCWWGG	1 cut(s)	208
EcoT38I	GRGCYC	1 cut(s)	303
ErhI	CCWWGG	1 cut(s)	208
FaeI	CATG	2 cut(s)	212, 235
FaqI	GGGAC	2 cut(s)	108, 602
FatI	CATG	2 cut(s)	208, 231
FokI	GGATG	1 cut(s)	383
FriOI	GRGCYC	1 cut(s)	303
FspBI	CTAG	3 cut(s)	221, 405, 665
HaeIII	GGCC	2 cut(s)	207, 213
HapII	CCGG	2 cut(s)	291, 531
HgaI	GACGC	1 cut(s)	296
Hin1I	GRCGYC	1 cut(s)	288
Hin1II	CATG	2 cut(s)	212, 235
HincII	GTYRAC	1 cut(s)	308
HindII	GTYRAC	1 cut(s)	308
HindIII	AAGCTT	2 cut(s)	498, 518
HinfI	GANTC	1 cut(s)	197
HpaII	CCGG	2 cut(s)	291, 531
HphI	GGTGA	2 cut(s)	260, 545
Hpy166II	GTNNAC	3 cut(s)	226, 308, 638
Hpy188I	TCNGA	5 cut(s)	259, 370, 428, 441, 505
Hpy188III	TCNNGA	1 cut(s)	620
Hpy8I	GTNNAC	3 cut(s)	226, 308, 638
HpyCH4III	ACNGT	3 cut(s)	312, 553, 650
HpyCH4IV	ACGT	2 cut(s)	423, 560
HpyCH4V	TGCA	5 cut(s)	270, 582, 629, 659, 693
HpyF10VI	GCNNNNNNNGC	3 cut(s)	68, 276, 506
HpyF3I	CTNAG	3 cut(s)	34, 256, 729
HpySE526I	ACGT	2 cut(s)	423, 560
Hsp92I	GRCGYC	1 cut(s)	288
Hsp92II	CATG	2 cut(s)	212, 235
Kzo9I	GATC	2 cut(s)	346, 436
LmnI	GCTCC	2 cut(s)	306, 329
LpnPI	CCDG	6 cut(s)	114, 168, 189, 304, 544, 582
LweI	GCATC	1 cut(s)	496
MaeI	CTAG	3 cut(s)	221, 405, 665
MaeII	ACGT	2 cut(s)	423, 560
MaeIII	GTNAC	1 cut(s)	553
MalI	GATC	2 cut(s)	348, 438
MboI	GATC	2 cut(s)	346, 436
MboII	GAAGA	1 cut(s)	142
MhlI	GDGCHC	1 cut(s)	303
MlsI	TGGCCA	2 cut(s)	207, 213
MluCI	AATT	1 cut(s)	604
MluNI	TGGCCA	2 cut(s)	207, 213
MnlI	CCTC	4 cut(s)	33, 186, 365, 602
Mox20I	TGGCCA	2 cut(s)	207, 213
MscI	TGGCCA	2 cut(s)	207, 213
MseI	TTAA	5 cut(s)	140, 359, 468, 479, 603
Msp20I	TGGCCA	2 cut(s)	207, 213
MspI	CCGG	2 cut(s)	291, 531
MwoI	GCNNNNNNNGC	3 cut(s)	68, 276, 506
NcoI	CCATGG	1 cut(s)	208
NdeII	GATC	2 cut(s)	346, 436
NlaIII	CATG	2 cut(s)	212, 235
NlaIV	GGNNCC	2 cut(s)	331, 590
NmuCI	GTSAC	1 cut(s)	553
PfeI	GAWTC	1 cut(s)	197
PflMI	CCANNNNNTGG	1 cut(s)	232
PinAI	ACCGGT	1 cut(s)	530
PpuMI	RGGWCCY	1 cut(s)	589
Psp124BI	GAGCTC	1 cut(s)	303
Psp1406I	AACGTT	1 cut(s)	560
Psp5II	RGGWCCY	1 cut(s)	589
PspN4I	GGNNCC	2 cut(s)	331, 590
PspPI	GGNCC	1 cut(s)	589
PspPPI	RGGWCCY	1 cut(s)	589
RsaI	GTAC	3 cut(s)	344, 365, 727
RsaNI	GTAC	3 cut(s)	343, 364, 726
SacI	GAGCTC	1 cut(s)	303
SaqAI	TTAA	5 cut(s)	140, 359, 468, 479, 603
Sau3AI	GATC	2 cut(s)	346, 436
Sau96I	GGNCC	1 cut(s)	589
ScaI	AGTACT	1 cut(s)	365
SduI	GDGCHC	1 cut(s)	303
SfaNI	GCATC	1 cut(s)	496
SinI	GGWCC	1 cut(s)	589
Sse9I	AATT	1 cut(s)	604
SsiI	CCGC	1 cut(s)	654
SspMI	CTAG	3 cut(s)	221, 405, 665
SstI	GAGCTC	1 cut(s)	303
StyI	CCWWGG	1 cut(s)	208
TaaI	ACNGT	3 cut(s)	312, 553, 650
TaiI	ACGT	2 cut(s)	426, 563
TaqI	TCGA	3 cut(s)	200, 419, 546
TasI	AATT	1 cut(s)	604
TatI	WGTACW	1 cut(s)	363
TfiI	GAWTC	1 cut(s)	197
Tru1I	TTAA	5 cut(s)	140, 359, 468, 479, 603
Tru9I	TTAA	5 cut(s)	140, 359, 468, 479, 603
TscAI	CASTG	2 cut(s)	118, 356
TseFI	GTSAC	1 cut(s)	553
Tsp45I	GTSAC	1 cut(s)	553
TspDTI	ATGAA	1 cut(s)	510
TspGWI	ACGGA	1 cut(s)	293
TspRI	CASTG	2 cut(s)	118, 356
Van91I	CCANNNNNTGG	1 cut(s)	232
VpaK11BI	GGWCC	1 cut(s)	589
XcmI	CCANNNNNNNNNTGG	1 cut(s)	62
XspI	CTAG	3 cut(s)	221, 405, 665
ZrmI	AGTACT	1 cut(s)	365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.