Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0000899

Physical Location & Seq

Genomic Coordinates Forward (+)

9003236 .. 9004437

Gene Structure 1202 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g10161.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGTTGTGCTACAAAACAATCCCTCTAGGTTTCCTAGTCTTCTGTTTTTTCATCCATTCATCCTTTGGGGCTTCCTCACTCAACCATTTCTGTTTCAGCCATGAAAACTACACTGCCGATAGCCCATATGATGCGCACTTGACTCGGTTATTCACCCTTCTACAGACCAAAGTTCCTCCTACCGGATTTGGCCTTGCTTCGACCGGTCAAGGCCTAAAGAAAGCAAATGGCCTAGCACTTTGCCGAGGCGATGTCTCGAGTGAAGATTGCACTACTTGTGTGGTTGATGCAAGCAAAGATATTAGAGAGTTCTGCCCGAACAGCAAAGGAGCCATAATATGGTACGACCACTGCCTCTTAAAGTATTCAAATGTGGACTTCTTTGGGAAAATTGATAACAAAAACAAGTTCTACATGTGGAACGTTCAAGAAGTACAGAATCCCACATTATTCAATAAGAGCGTTAAGGACTTGTTGAGTGGATTAGCTGTTGAGGCTTCTGAGGCTGCTGCTGCTCCGAAGTTTTATGCAACCGGTGAGCTGCAACTTGATACATTCACAACACTATATGGTCTGGCTACATGCACTAGGGACCTCTCGGCCGCAGATTGTAAGAAGTGTCTTGATGGTGCAGTAAGTGAATTGCCAAACTGCTGCAGTGCAAAGCGAGGTGGGCGTGTTGTAGGTGGGAGTTGCAATGTCGGATTTGAACTTTACCCCATTGTTGGGACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0030312 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071944 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1204 Stress-antifung

Protein Analysis

245

Amino Acids

26.56

Weight (kDa)

6.5

Isoelectric Point (pI)

33.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stress-antifung	PF01657	31 - 124	3.4e-22	Salt stress response/antifungal
Stress-antifung	PF01657	146 - 238	5.1e-12	Salt stress response/antifungal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000899)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22060
fragaria_vesca	FvH4_2g10161
malus_domestica	MD05G1056000.v1.1 MD05G1056300.v1.1 MD10G1064400.v1.1
prunus_persica	Prupe.3G109800_v2.0.a1 Prupe.3G110100_v2.0.a1 Prupe.3G110200_v2.0.a1 Prupe.3G110300_v2.0.a1 Prupe.8G086600_v2.0.a1
pyrus_communis	pycom05g04770 pycom05g04780
rosa_chinensis	RchiOBHm_Chr1g0328011 RchiOBHm_Chr1g0328031 RchiOBHm_Chr2g0158681 RchiOBHm_Chr2g0160231 RchiOBHm_Chr2g0160251
rosa_laevigata	RLG00000014015 RLG00000021106 RLG00000021206 RLG00000021207 RLG00000029943 RLG00000029944 RLG00000029946 RLG00000029948
rosa_multiflora	Rmu_co8269469.1_g000001 Rmu_co8408147.1_g000001 Rmu_sc0000403.1_g000003 Rmu_sc0008269.1_g000008 Rmu_sc0020806.1_g000002
rosa_roxburghii	Rroxscaffold_2G00091070 Rroxscaffold_2G00091110 Rroxscaffold_4G00321960 Rroxscaffold_4G00321970 Rroxscaffold_4G00321980 Rroxscaffold_4G00322000 Rroxscaffold_4G00322030 Rroxscaffold_7G00200860 Rroxscaffold_7G00200940
rosa_rugosa	Rorug01G0073200 Rorug01G0073200 Rorug01G0073300 Rorug02G0471400 Rorug02G0472000 Rorug02G0482400 Rorug02G0482400
rosa_samantha	Rh1BG071900 Rh1BG072100 Rh2AG537200 Rh2AG547800 Rh2BG550400 Rh2BG561200 Rh2BG561400 Rh2CG520900 Rh2CG531800 Rh2CG532100 Rh6AG153200 Rh6CG149000
rosa_wichuraiana	Rw0G019500 Rw1G006970 Rw1G006980 Rw1G006990 Rw2G044480 Rw2G045320 Rw6G013180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	135
AccB7I	CCANNNNNTGG	1 cut(s)	339
AciI	CCGC	1 cut(s)	603
AclI	AACGTT	1 cut(s)	423
AcoI	YGGCCR	1 cut(s)	600
AfaI	GTAC	2 cut(s)	344, 435
AfiI	CCNNNNNNNGG	4 cut(s)	182, 339, 725, 726
AflIII	ACRYGT	1 cut(s)	414
AgeI	ACCGGT	2 cut(s)	203, 533
AgsI	TTSAA	4 cut(s)	369, 428, 454, 710
AluBI	AGCT	2 cut(s)	488, 541
AluI	AGCT	2 cut(s)	488, 541
Alw26I	GTCTC	1 cut(s)	259
Ama87I	CYCGRG	1 cut(s)	256
AoxI	GGCC	4 cut(s)	190, 211, 229, 600
ApeKI	GCWGC	5 cut(s)	506, 509, 512, 541, 654
AsiGI	ACCGGT	2 cut(s)	203, 533
AspLEI	GCGC	1 cut(s)	136
AspS9I	GGNCC	1 cut(s)	592
AsuHPI	GGTGA	2 cut(s)	145, 548
AvaI	CYCGRG	1 cut(s)	256
AvaII	GGWCC	1 cut(s)	592
BbsI	GAAGAC	1 cut(s)	31
BbvI	GCAGC	5 cut(s)	493, 496, 499, 528, 641
BccI	CCATC	1 cut(s)	620
BcgI	CGANNNNNNTGC	2 cut(s)	125, 159
BcoDI	GTCTC	1 cut(s)	259
BfaI	CTAG	4 cut(s)	26, 35, 233, 588
BfmI	CTRYAG	2 cut(s)	161, 655
BisI	GCNGC	6 cut(s)	507, 510, 513, 542, 603, 655
BlsI	GCNGC	6 cut(s)	508, 511, 514, 543, 604, 656
Bme18I	GGWCC	1 cut(s)	592
BmeT110I	CYCGRG	1 cut(s)	256
BmgT120I	GGNCC	1 cut(s)	592
BmiI	GGNNCC	2 cut(s)	331, 593
BmsI	GCATC	2 cut(s)	121, 277
BpiI	GAAGAC	1 cut(s)	31
BsaJI	CCNNGG	1 cut(s)	244
BsaWI	WCCGGW	3 cut(s)	182, 203, 533
Bsc4I	CCNNNNNNNGG	4 cut(s)	182, 339, 725, 726
Bse118I	RCCGGY	2 cut(s)	203, 533
Bse3DI	GCAATG	1 cut(s)	703
BseDI	CCNNGG	1 cut(s)	244
BseGI	GGATG	2 cut(s)	51, 59
BseLI	CCNNNNNNNGG	4 cut(s)	182, 339, 725, 726
BseMI	GCAATG	1 cut(s)	703
BseMII	CTCAG	1 cut(s)	492
BseX3I	CGGCCG	1 cut(s)	600
BseXI	GCAGC	5 cut(s)	493, 496, 499, 528, 641
BsgI	GTGCAG	1 cut(s)	651
Bsh1285I	CGRYCG	2 cut(s)	204, 603
BshFI	GGCC	4 cut(s)	192, 213, 231, 602
BshTI	ACCGGT	2 cut(s)	203, 533
BsiEI	CGRYCG	2 cut(s)	204, 603
BsiHKCI	CYCGRG	1 cut(s)	256
BsiSI	CCGG	3 cut(s)	183, 204, 534
BslFI	GGGAC	1 cut(s)	605
BslI	CCNNNNNNNGG	4 cut(s)	182, 339, 725, 726
BsmAI	GTCTC	1 cut(s)	259
BsmFI	GGGAC	1 cut(s)	605
BsnI	GGCC	4 cut(s)	192, 213, 231, 602
BsoBI	CYCGRG	1 cut(s)	256
BspACI	CCGC	1 cut(s)	603
BspANI	GGCC	4 cut(s)	192, 213, 231, 602
BspCNI	CTCAG	1 cut(s)	493
BspLI	GGNNCC	2 cut(s)	331, 593
BspMAI	CTGCAG	1 cut(s)	659
BsrDI	GCAATG	1 cut(s)	703
BsrFI	RCCGGY	2 cut(s)	203, 533
BssAI	RCCGGY	2 cut(s)	203, 533
BssECI	CCNNGG	1 cut(s)	244
BstC8I	GCNNGC	1 cut(s)	292
BstDEI	CTNAG	1 cut(s)	501
BstF5I	GGATG	2 cut(s)	51, 59
BstHHI	GCGC	1 cut(s)	136
BstMAI	GTCTC	1 cut(s)	259
BstMCI	CGRYCG	2 cut(s)	204, 603
BstMWI	GCNNNNNNNGC	5 cut(s)	321, 494, 503, 512, 673
BstNSI	RCATGY	2 cut(s)	418, 585
BstSFI	CTRYAG	2 cut(s)	161, 655
BstV1I	GCAGC	5 cut(s)	493, 496, 499, 528, 641
BstV2I	GAAGAC	1 cut(s)	31
BstZI	CGGCCG	1 cut(s)	600
BsuRI	GGCC	4 cut(s)	192, 213, 231, 602
BtgZI	GCGATG	1 cut(s)	264
BtsCI	GGATG	2 cut(s)	51, 59
BtsI	GCAGTG	3 cut(s)	111, 349, 664
BtsIMutI	CAGTG	3 cut(s)	111, 349, 664
Cac8I	GCNNGC	1 cut(s)	292
CfoI	GCGC	1 cut(s)	136
Cfr10I	RCCGGY	2 cut(s)	203, 533
Cfr13I	GGNCC	1 cut(s)	592
Csp6I	GTAC	2 cut(s)	343, 434
CspAI	ACCGGT	2 cut(s)	203, 533
CviAII	CATG	3 cut(s)	101, 415, 582
CviQI	GTAC	2 cut(s)	343, 434
DdeI	CTNAG	1 cut(s)	501
EaeI	YGGCCR	1 cut(s)	600
EagI	CGGCCG	1 cut(s)	600
EclXI	CGGCCG	1 cut(s)	600
Eco147I	AGGCCT	1 cut(s)	213
Eco47I	GGWCC	1 cut(s)	592
Eco52I	CGGCCG	1 cut(s)	600
Eco88I	CYCGRG	1 cut(s)	256
EcoO109I	RGGNCCY	1 cut(s)	592
FaeI	CATG	3 cut(s)	104, 418, 585
FaqI	GGGAC	1 cut(s)	605
FatI	CATG	3 cut(s)	100, 414, 581
FauNDI	CATATG	1 cut(s)	127
Fnu4HI	GCNGC	6 cut(s)	507, 510, 513, 542, 603, 655
FokI	GGATG	2 cut(s)	38, 46
Fsp4HI	GCNGC	6 cut(s)	507, 510, 513, 542, 603, 655
FspAI	RTGCGCAY	1 cut(s)	135
FspBI	CTAG	4 cut(s)	26, 35, 233, 588
FspI	TGCGCA	1 cut(s)	135
GlaI	GCGC	1 cut(s)	135
GluI	GCNGC	6 cut(s)	507, 510, 513, 542, 603, 655
HaeIII	GGCC	4 cut(s)	192, 213, 231, 602
HapII	CCGG	3 cut(s)	183, 204, 534
HhaI	GCGC	1 cut(s)	136
Hin1II	CATG	3 cut(s)	104, 418, 585
Hin6I	GCGC	1 cut(s)	134
HinP1I	GCGC	1 cut(s)	134
HinfI	GANTC	2 cut(s)	142, 439
HpaII	CCGG	3 cut(s)	183, 204, 534
HphI	GGTGA	2 cut(s)	145, 548
Hpy166II	GTNNAC	1 cut(s)	376
Hpy188I	TCNGA	3 cut(s)	502, 519, 704
Hpy188III	TCNNGA	3 cut(s)	256, 428, 623
Hpy8I	GTNNAC	1 cut(s)	376
HpyAV	CCTTC	1 cut(s)	167
HpyCH4IV	ACGT	1 cut(s)	423
HpyCH4V	TGCA	9 cut(s)	270, 290, 530, 544, 585, 632, 657, 662, 696
HpyF10VI	GCNNNNNNNGC	5 cut(s)	321, 494, 503, 512, 673
HpyF3I	CTNAG	1 cut(s)	501
HpySE526I	ACGT	1 cut(s)	423
Hsp92II	CATG	3 cut(s)	104, 418, 585
HspAI	GCGC	1 cut(s)	134
LmnI	GCTCC	2 cut(s)	329, 520
LpnPI	CCDG	4 cut(s)	196, 217, 547, 560
Lsp1109I	GCAGC	5 cut(s)	493, 496, 499, 528, 641
LweI	GCATC	2 cut(s)	121, 277
MaeI	CTAG	4 cut(s)	26, 35, 233, 588
MaeII	ACGT	1 cut(s)	423
MboII	GAAGA	2 cut(s)	31, 275
MluCI	AATT	2 cut(s)	390, 641
MlyI	GAGTC	1 cut(s)	136
MmeI	TCCRAC	1 cut(s)	682
MnlI	CCTC	9 cut(s)	33, 85, 186, 239, 365, 487, 496, 605, 662
MseI	TTAA	2 cut(s)	359, 465
MspI	CCGG	3 cut(s)	183, 204, 534
MwoI	GCNNNNNNNGC	5 cut(s)	321, 494, 503, 512, 673
NdeI	CATATG	1 cut(s)	127
NlaIII	CATG	3 cut(s)	104, 418, 585
NlaIV	GGNNCC	2 cut(s)	331, 593
NmeAIII	GCCGAG	2 cut(s)	269, 578
NsbI	TGCGCA	1 cut(s)	135
NspI	RCATGY	2 cut(s)	418, 585
PaeR7I	CTCGAG	1 cut(s)	256
PceI	AGGCCT	1 cut(s)	213
PciI	ACATGT	1 cut(s)	414
PfeI	GAWTC	1 cut(s)	439
PflMI	CCANNNNNTGG	1 cut(s)	339
PinAI	ACCGGT	2 cut(s)	203, 533
PkrI	GCNGC	6 cut(s)	508, 511, 514, 543, 604, 656
PleI	GAGTC	1 cut(s)	136
PpsI	GAGTC	1 cut(s)	136
PpuMI	RGGWCCY	1 cut(s)	592
PscI	ACATGT	1 cut(s)	414
Psp1406I	AACGTT	1 cut(s)	423
Psp5II	RGGWCCY	1 cut(s)	592
PspN4I	GGNNCC	2 cut(s)	331, 593
PspPI	GGNCC	1 cut(s)	592
PspPPI	RGGWCCY	1 cut(s)	592
PstI	CTGCAG	1 cut(s)	659
RsaI	GTAC	2 cut(s)	344, 435
RsaNI	GTAC	2 cut(s)	343, 434
SaqAI	TTAA	2 cut(s)	359, 465
SatI	GCNGC	6 cut(s)	507, 510, 513, 542, 603, 655
Sau96I	GGNCC	1 cut(s)	592
SchI	GAGTC	1 cut(s)	136
SetI	ASST	7 cut(s)	31, 426, 490, 543, 597, 673, 688
SfaNI	GCATC	2 cut(s)	121, 277
SfcI	CTRYAG	2 cut(s)	161, 655
Sfr274I	CTCGAG	1 cut(s)	256
SinI	GGWCC	1 cut(s)	592
SlaI	CTCGAG	1 cut(s)	256
SmlI	CTYRAG	1 cut(s)	256
SmoI	CTYRAG	1 cut(s)	256
Sse9I	AATT	2 cut(s)	390, 641
SseBI	AGGCCT	1 cut(s)	213
SsiI	CCGC	1 cut(s)	603
SspMI	CTAG	4 cut(s)	26, 35, 233, 588
StuI	AGGCCT	1 cut(s)	213
TaiI	ACGT	1 cut(s)	426
TaqI	TCGA	2 cut(s)	200, 257
TasI	AATT	2 cut(s)	390, 641
TatI	WGTACW	1 cut(s)	433
TauI	GCSGC	1 cut(s)	605
TfiI	GAWTC	1 cut(s)	439
Tru1I	TTAA	2 cut(s)	359, 465
Tru9I	TTAA	2 cut(s)	359, 465
TscAI	CASTG	3 cut(s)	118, 356, 664
TseI	GCWGC	5 cut(s)	506, 509, 512, 541, 654
TspDTI	ATGAA	3 cut(s)	40, 48, 117
TspRI	CASTG	3 cut(s)	118, 356, 664
Van91I	CCANNNNNTGG	1 cut(s)	339
VpaK11BI	GGWCC	1 cut(s)	592
XceI	RCATGY	2 cut(s)	418, 585
XcmI	CCANNNNNNNNNTGG	1 cut(s)	62
XhoI	CTCGAG	1 cut(s)	256
XspI	CTAG	4 cut(s)	26, 35, 233, 588

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.