Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0000899

Physical Location & Seq

Genomic Coordinates Forward (+)

45727502 .. 45728714

Gene Structure 1213 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014015

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGTTGTGCTTTAAAACAATCCCTCTAGGTTTCATAGTCTTCTGTCTTTTCATCCACTCATCCTTTGGTGCTTCCTCACTCAACCATTTCTGTTTCAGCCATGAAAACTACACTGCCAATAGCACATATGATGCACACTTGACTCGGTTATTCATCCTTTTACAGACCAAAGTTCCTCCTACCGGATTTGGCCTTGCTTCGACTGGTCAAGCCCAAAAGAAAGCAAATGGCCTTGCACTTTGCCGAGGCGATACCTCAAGTGAAGATTGCACTACTTGTGTGGTTGATGCAAGCAAAGATATTAGAGAGTTCTGCCCGAACAGCAAAGGAGCCATAATATGGTATGATCACTGCCTCTTAAAGTACTCAAATGTGGACTTCTTTGGGAAAATTGATAACAAAAACAAGTTCTATATGTGGAACGTTCAAGAAGTACAGAATCCCACACTTTTCAATGAGAGAGTTAAGGGATTGTTGAGTGGATTAGCTGTTGAAGCTTCTGATGGTAGTGCTAATCCGAAGTTTTATGCAACTGGTGAGCTGCAACTTGATACATTCACAACACTGTATGGTTTGGCTACATGCACAAGGGACCTCTCATCCCCAGATTGTAAGAAGTGTCTTGATGGTGCAATAAGTGAATTGCCAAACTGCTGCAATGCAAAGCGAGCCGAAGACGAAGATCGTGTGCACCTCGGGTCGTCGAAACAGGAGCGGCTGATCTGGCCTTCTTGTTCTCCGGCGTCTGGCTGGTCGGTGTCGATGATACCAGCTTCTCAAGATCTCGGGGTCACTGGTCCTAGTCGTCGGAAGGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0030312 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071944 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1204 Stress-antifung

Protein Analysis

273

Amino Acids

29.86

Weight (kDa)

6.96

Isoelectric Point (pI)

40.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stress-antifung	PF01657	31 - 124	1.5e-22	Salt stress response/antifungal
Stress-antifung	PF01657	146 - 224	5.5e-09	Salt stress response/antifungal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000899)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22060
fragaria_vesca	FvH4_2g10161
malus_domestica	MD05G1056000.v1.1 MD05G1056300.v1.1 MD10G1064400.v1.1
prunus_persica	Prupe.3G109800_v2.0.a1 Prupe.3G110100_v2.0.a1 Prupe.3G110200_v2.0.a1 Prupe.3G110300_v2.0.a1 Prupe.8G086600_v2.0.a1
pyrus_communis	pycom05g04770 pycom05g04780
rosa_chinensis	RchiOBHm_Chr1g0328011 RchiOBHm_Chr1g0328031 RchiOBHm_Chr2g0158681 RchiOBHm_Chr2g0160231 RchiOBHm_Chr2g0160251
rosa_laevigata	RLG00000014015 RLG00000021106 RLG00000021206 RLG00000021207 RLG00000029943 RLG00000029944 RLG00000029946 RLG00000029948
rosa_multiflora	Rmu_co8269469.1_g000001 Rmu_co8408147.1_g000001 Rmu_sc0000403.1_g000003 Rmu_sc0008269.1_g000008 Rmu_sc0020806.1_g000002
rosa_roxburghii	Rroxscaffold_2G00091070 Rroxscaffold_2G00091110 Rroxscaffold_4G00321960 Rroxscaffold_4G00321970 Rroxscaffold_4G00321980 Rroxscaffold_4G00322000 Rroxscaffold_4G00322030 Rroxscaffold_7G00200860 Rroxscaffold_7G00200940
rosa_rugosa	Rorug01G0073200 Rorug01G0073200 Rorug01G0073300 Rorug02G0471400 Rorug02G0472000 Rorug02G0482400 Rorug02G0482400
rosa_samantha	Rh1BG071900 Rh1BG072100 Rh2AG537200 Rh2AG547800 Rh2BG550400 Rh2BG561200 Rh2BG561400 Rh2CG520900 Rh2CG531800 Rh2CG532100 Rh6AG153200 Rh6CG149000
rosa_wichuraiana	Rw0G019500 Rw1G006970 Rw1G006980 Rw1G006990 Rw2G044480 Rw2G045320 Rw6G013180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	339
AccBSI	CCGCTC	1 cut(s)	715
AciI	CCGC	1 cut(s)	715
AclI	AACGTT	1 cut(s)	423
AcyI	GRCGYC	1 cut(s)	743
AfaI	GTAC	2 cut(s)	365, 435
AfiI	CCNNNNNNNGG	3 cut(s)	182, 339, 746
AgsI	TTSAA	3 cut(s)	428, 454, 494
AluBI	AGCT	4 cut(s)	488, 497, 541, 773
AluI	AGCT	4 cut(s)	488, 497, 541, 773
Alw21I	GWGCWC	1 cut(s)	693
Alw44I	GTGCAC	1 cut(s)	689
Ama87I	CYCGRG	2 cut(s)	695, 785
AoxI	GGCC	3 cut(s)	190, 229, 725
ApaLI	GTGCAC	1 cut(s)	689
ApeKI	GCWGC	2 cut(s)	541, 654
AspS9I	GGNCC	2 cut(s)	592, 797
AsuHPI	GGTGA	1 cut(s)	548
AvaI	CYCGRG	2 cut(s)	695, 785
AvaII	GGWCC	2 cut(s)	592, 797
BaeGI	GKGCMC	1 cut(s)	693
BbsI	GAAGAC	2 cut(s)	31, 681
Bbv12I	GWGCWC	1 cut(s)	693
BbvI	GCAGC	2 cut(s)	528, 641
BccI	CCATC	2 cut(s)	497, 620
BclI	TGATCA	1 cut(s)	346
BfaI	CTAG	3 cut(s)	26, 801, 817
BglII	AGATCT	1 cut(s)	781
BisI	GCNGC	3 cut(s)	542, 655, 716
BlsI	GCNGC	3 cut(s)	543, 656, 717
BmcAI	AGTACT	1 cut(s)	365
Bme18I	GGWCC	2 cut(s)	592, 797
BmeT110I	CYCGRG	2 cut(s)	695, 785
BmgT120I	GGNCC	2 cut(s)	592, 797
BmiI	GGNNCC	2 cut(s)	331, 593
BmsI	GCATC	2 cut(s)	121, 277
BpiI	GAAGAC	2 cut(s)	31, 681
BpuEI	CTTGAG	2 cut(s)	241, 762
BsaHI	GRCGYC	1 cut(s)	743
BsaJI	CCNNGG	2 cut(s)	244, 694
BsaWI	WCCGGW	1 cut(s)	182
Bsc4I	CCNNNNNNNGG	3 cut(s)	182, 339, 746
Bse1I	ACTGG	3 cut(s)	208, 538, 799
Bse3DI	GCAATG	1 cut(s)	664
BseDI	CCNNGG	2 cut(s)	244, 694
BseGI	GGATG	4 cut(s)	51, 59, 153, 599
BseLI	CCNNNNNNNGG	3 cut(s)	182, 339, 746
BseMI	GCAATG	1 cut(s)	664
BseNI	ACTGG	3 cut(s)	208, 538, 799
BseSI	GKGCMC	1 cut(s)	693
BseXI	GCAGC	2 cut(s)	528, 641
BshFI	GGCC	3 cut(s)	192, 231, 727
BsiHKAI	GWGCWC	1 cut(s)	693
BsiHKCI	CYCGRG	2 cut(s)	695, 785
BsiSI	CCGG	2 cut(s)	183, 740
BslFI	GGGAC	1 cut(s)	605
BslI	CCNNNNNNNGG	3 cut(s)	182, 339, 746
BsmFI	GGGAC	1 cut(s)	605
BsnI	GGCC	3 cut(s)	192, 231, 727
BsoBI	CYCGRG	2 cut(s)	695, 785
Bsp1286I	GDGCHC	1 cut(s)	693
Bsp143I	GATC	4 cut(s)	346, 682, 720, 781
BspACI	CCGC	1 cut(s)	715
BspANI	GGCC	3 cut(s)	192, 231, 727
BspLI	GGNNCC	2 cut(s)	331, 593
BsrBI	CCGCTC	1 cut(s)	715
BsrDI	GCAATG	1 cut(s)	664
BsrI	ACTGG	3 cut(s)	208, 538, 799
BssECI	CCNNGG	2 cut(s)	244, 694
BssMI	GATC	4 cut(s)	346, 682, 720, 781
BssNI	GRCGYC	1 cut(s)	743
Bst4CI	ACNGT	1 cut(s)	567
BstACI	GRCGYC	1 cut(s)	743
BstC8I	GCNNGC	2 cut(s)	292, 669
BstF5I	GGATG	4 cut(s)	51, 59, 153, 599
BstKTI	GATC	4 cut(s)	349, 685, 723, 784
BstMBI	GATC	4 cut(s)	346, 682, 720, 781
BstMWI	GCNNNNNNNGC	4 cut(s)	321, 494, 668, 724
BstNSI	RCATGY	1 cut(s)	585
BstSLI	GKGCMC	1 cut(s)	693
BstV1I	GCAGC	2 cut(s)	528, 641
BstV2I	GAAGAC	2 cut(s)	31, 681
BstX2I	RGATCY	1 cut(s)	781
BstYI	RGATCY	1 cut(s)	781
BsuRI	GGCC	3 cut(s)	192, 231, 727
BtsCI	GGATG	4 cut(s)	51, 59, 153, 599
BtsI	GCAGTG	2 cut(s)	111, 349
BtsIMutI	CAGTG	4 cut(s)	111, 349, 563, 792
Cac8I	GCNNGC	2 cut(s)	292, 669
Cfr13I	GGNCC	2 cut(s)	592, 797
CseI	GACGC	1 cut(s)	732
Csp6I	GTAC	2 cut(s)	364, 434
CviAII	CATG	2 cut(s)	101, 582
CviQI	GTAC	2 cut(s)	364, 434
DpnI	GATC	4 cut(s)	348, 684, 722, 783
DpnII	GATC	4 cut(s)	346, 682, 720, 781
DraI	TTTAAA	1 cut(s)	13
Eco47I	GGWCC	2 cut(s)	592, 797
Eco88I	CYCGRG	2 cut(s)	695, 785
EcoO109I	RGGNCCY	1 cut(s)	592
FaeI	CATG	2 cut(s)	104, 585
FaqI	GGGAC	1 cut(s)	605
FatI	CATG	2 cut(s)	100, 581
FauNDI	CATATG	1 cut(s)	127
FbaI	TGATCA	1 cut(s)	346
Fnu4HI	GCNGC	3 cut(s)	542, 655, 716
FokI	GGATG	4 cut(s)	38, 46, 140, 586
Fsp4HI	GCNGC	3 cut(s)	542, 655, 716
FspBI	CTAG	3 cut(s)	26, 801, 817
GluI	GCNGC	3 cut(s)	542, 655, 716
HaeIII	GGCC	3 cut(s)	192, 231, 727
HapII	CCGG	2 cut(s)	183, 740
HgaI	GACGC	1 cut(s)	732
Hin1I	GRCGYC	1 cut(s)	743
Hin1II	CATG	2 cut(s)	104, 585
HindIII	AAGCTT	1 cut(s)	495
HinfI	GANTC	2 cut(s)	142, 439
HpaII	CCGG	2 cut(s)	183, 740
HphI	GGTGA	1 cut(s)	548
Hpy166II	GTNNAC	2 cut(s)	376, 691
Hpy188I	TCNGA	3 cut(s)	502, 519, 810
Hpy188III	TCNNGA	3 cut(s)	428, 623, 779
Hpy8I	GTNNAC	2 cut(s)	376, 691
Hpy99I	CGWCG	2 cut(s)	706, 810
HpyAV	CCTTC	2 cut(s)	738, 805
HpyCH4III	ACNGT	1 cut(s)	567
HpyCH4IV	ACGT	1 cut(s)	423
HpyF10VI	GCNNNNNNNGC	4 cut(s)	321, 494, 668, 724
HpySE526I	ACGT	1 cut(s)	423
Hsp92I	GRCGYC	1 cut(s)	743
Hsp92II	CATG	2 cut(s)	104, 585
Ksp22I	TGATCA	1 cut(s)	346
Kzo9I	GATC	4 cut(s)	346, 682, 720, 781
LmnI	GCTCC	2 cut(s)	329, 712
Lsp1109I	GCAGC	2 cut(s)	528, 641
LweI	GCATC	2 cut(s)	121, 277
MaeI	CTAG	3 cut(s)	26, 801, 817
MaeII	ACGT	1 cut(s)	423
MaeIII	GTNAC	1 cut(s)	790
MalI	GATC	4 cut(s)	348, 684, 722, 783
MbiI	CCGCTC	1 cut(s)	715
MboI	GATC	4 cut(s)	346, 682, 720, 781
MboII	GAAGA	4 cut(s)	31, 275, 686, 692
MflI	RGATCY	1 cut(s)	781
MhlI	GDGCHC	1 cut(s)	693
MluCI	AATT	2 cut(s)	390, 641
MlyI	GAGTC	1 cut(s)	136
MmeI	TCCRAC	1 cut(s)	788
MnlI	CCTC	8 cut(s)	33, 85, 186, 239, 265, 365, 605, 704
MseI	TTAA	3 cut(s)	12, 359, 465
MspI	CCGG	2 cut(s)	183, 740
MwoI	GCNNNNNNNGC	4 cut(s)	321, 494, 668, 724
NdeI	CATATG	1 cut(s)	127
NdeII	GATC	4 cut(s)	346, 682, 720, 781
NlaIII	CATG	2 cut(s)	104, 585
NlaIV	GGNNCC	2 cut(s)	331, 593
NmeAIII	GCCGAG	1 cut(s)	269
NmuCI	GTSAC	1 cut(s)	790
NspI	RCATGY	1 cut(s)	585
PfeI	GAWTC	1 cut(s)	439
PflMI	CCANNNNNTGG	1 cut(s)	339
PkrI	GCNGC	3 cut(s)	543, 656, 717
PleI	GAGTC	1 cut(s)	136
PpsI	GAGTC	1 cut(s)	136
PpuMI	RGGWCCY	1 cut(s)	592
Psp1406I	AACGTT	1 cut(s)	423
Psp5II	RGGWCCY	1 cut(s)	592
PspN4I	GGNNCC	2 cut(s)	331, 593
PspPI	GGNCC	2 cut(s)	592, 797
PspPPI	RGGWCCY	1 cut(s)	592
PsuI	RGATCY	1 cut(s)	781
RsaI	GTAC	2 cut(s)	365, 435
RsaNI	GTAC	2 cut(s)	364, 434
SaqAI	TTAA	3 cut(s)	12, 359, 465
SatI	GCNGC	3 cut(s)	542, 655, 716
Sau3AI	GATC	4 cut(s)	346, 682, 720, 781
Sau96I	GGNCC	2 cut(s)	592, 797
ScaI	AGTACT	1 cut(s)	365
SchI	GAGTC	1 cut(s)	136
SduI	GDGCHC	1 cut(s)	693
SetI	ASST	9 cut(s)	31, 257, 426, 490, 499, 543, 597, 696, 775
SfaNI	GCATC	2 cut(s)	121, 277
SinI	GGWCC	2 cut(s)	592, 797
SmlI	CTYRAG	2 cut(s)	256, 777
SmoI	CTYRAG	2 cut(s)	256, 777
Sse9I	AATT	2 cut(s)	390, 641
SsiI	CCGC	1 cut(s)	715
SspMI	CTAG	3 cut(s)	26, 801, 817
TaaI	ACNGT	1 cut(s)	567
TaiI	ACGT	1 cut(s)	426
TaqI	TCGA	3 cut(s)	200, 704, 761
TasI	AATT	2 cut(s)	390, 641
TatI	WGTACW	2 cut(s)	363, 433
TauI	GCSGC	1 cut(s)	718
TfiI	GAWTC	1 cut(s)	439
Tru1I	TTAA	3 cut(s)	12, 359, 465
Tru9I	TTAA	3 cut(s)	12, 359, 465
TscAI	CASTG	4 cut(s)	118, 356, 570, 799
TseFI	GTSAC	1 cut(s)	790
TseI	GCWGC	2 cut(s)	541, 654
Tsp45I	GTSAC	1 cut(s)	790
TspDTI	ATGAA	4 cut(s)	22, 40, 117, 142
TspRI	CASTG	4 cut(s)	118, 356, 570, 799
Van91I	CCANNNNNTGG	1 cut(s)	339
VneI	GTGCAC	1 cut(s)	689
VpaK11BI	GGWCC	2 cut(s)	592, 797
XceI	RCATGY	1 cut(s)	585
XcmI	CCANNNNNNNNNTGG	1 cut(s)	62
XspI	CTAG	3 cut(s)	26, 801, 817
ZrmI	AGTACT	1 cut(s)	365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.