Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0000899

Physical Location & Seq

Genomic Coordinates Reverse (-)

8777619 .. 8778347

Gene Structure 729 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1064400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGTTCTTCTTCAAATCAATCCCTCTGGGTCTCTTAGTGCTTTGCCTTTTCCACCATTCTGCAATTGGTGCCTCCCCCCTTTACCATATTTGTTTCAGCCAACAAAACTACCCTGCTAGTAGTCCATATGGTGCCAACTTGAACTTATTGTTCAATCTTTTATACACCAAAGTTCCTCCTACGGGCTTTGGCCTTGGTTCAACTGGCCATGCCAAAAACCAAGTGAATGGCTTGGCCCTTTGTCGCGGTGACGTCTCAAGCAAAGATTGCAATACTTGCGTGGTTGATGCAAGCAAAGATTTACGCGAGCTCTGCCCTTCTCGTAAAGGAGCCATAATTTGGTATGATCACTGCCTTTTAAAGTACTCAGATGTGGGCTTTTTTGGGCAAATTGATACGAACAACAGGTTCTATTTGTATAACGTCCAAGAAGTAGAGAATGGAACAGTATTCAATGAGAAAGTCAAGGAATTGTTAAGTGGGTTATCTAATGAAGCTTCTGAAGATAATCAAAAGTTCTACGCTACTGGTGAGGTACAACTCGATACGTTCACAACATTATATGGTCTTGCTCAATGCACAAGGGACCTCTCTGGCGTTGATTGTAAGAAGTGTCTTGATAGTGCAATAGGCGAACTCCCAAACTGCTGCAATGCAAAACGAGGTGGGCGTGTTGTAGGTGGGAGCTGTAATGTTCGATTTGAACTGTATCCCATTGTCAGTACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0030312 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071944 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1204 Stress-antifung

Protein Analysis

243

Amino Acids

26.56

Weight (kDa)

6.5

Isoelectric Point (pI)

27.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stress-antifung	PF01657	31 - 124	1.7e-22	Salt stress response/antifungal
Stress-antifung	PF01657	145 - 236	8.6e-15	Salt stress response/antifungal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000899)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22060
fragaria_vesca	FvH4_2g10161
malus_domestica	MD05G1056000.v1.1 MD05G1056300.v1.1 MD10G1064400.v1.1
prunus_persica	Prupe.3G109800_v2.0.a1 Prupe.3G110100_v2.0.a1 Prupe.3G110200_v2.0.a1 Prupe.3G110300_v2.0.a1 Prupe.8G086600_v2.0.a1
pyrus_communis	pycom05g04770 pycom05g04780
rosa_chinensis	RchiOBHm_Chr1g0328011 RchiOBHm_Chr1g0328031 RchiOBHm_Chr2g0158681 RchiOBHm_Chr2g0160231 RchiOBHm_Chr2g0160251
rosa_laevigata	RLG00000014015 RLG00000021106 RLG00000021206 RLG00000021207 RLG00000029943 RLG00000029944 RLG00000029946 RLG00000029948
rosa_multiflora	Rmu_co8269469.1_g000001 Rmu_co8408147.1_g000001 Rmu_sc0000403.1_g000003 Rmu_sc0008269.1_g000008 Rmu_sc0020806.1_g000002
rosa_roxburghii	Rroxscaffold_2G00091070 Rroxscaffold_2G00091110 Rroxscaffold_4G00321960 Rroxscaffold_4G00321970 Rroxscaffold_4G00321980 Rroxscaffold_4G00322000 Rroxscaffold_4G00322030 Rroxscaffold_7G00200860 Rroxscaffold_7G00200940
rosa_rugosa	Rorug01G0073200 Rorug01G0073200 Rorug01G0073300 Rorug02G0471400 Rorug02G0472000 Rorug02G0482400 Rorug02G0482400
rosa_samantha	Rh1BG071900 Rh1BG072100 Rh2AG537200 Rh2AG547800 Rh2BG550400 Rh2BG561200 Rh2BG561400 Rh2CG520900 Rh2CG531800 Rh2CG532100 Rh6AG153200 Rh6CG149000
rosa_wichuraiana	Rw0G019500 Rw1G006970 Rw1G006980 Rw1G006990 Rw2G044480 Rw2G045320 Rw6G013180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	255
AccB1I	GGYRCC	2 cut(s)	68, 131
AccB7I	CCANNNNNTGG	1 cut(s)	339
AccII	CGCG	2 cut(s)	246, 306
AciI	CCGC	1 cut(s)	246
AcoI	YGGCCR	1 cut(s)	205
AcuI	CTGAAG	1 cut(s)	522
AcyI	GRCGYC	1 cut(s)	252
AfaI	GTAC	3 cut(s)	365, 537, 724
AfiI	CCNNNNNNNGG	2 cut(s)	182, 339
AgsI	TTSAA	6 cut(s)	13, 142, 154, 201, 454, 704
AluBI	AGCT	3 cut(s)	310, 497, 687
AluI	AGCT	3 cut(s)	310, 497, 687
Alw21I	GWGCWC	1 cut(s)	312
Alw26I	GTCTC	2 cut(s)	35, 259
AoxI	GGCC	3 cut(s)	190, 205, 234
ApeKI	GCWGC	1 cut(s)	648
AspS9I	GGNCC	2 cut(s)	235, 586
AsuHPI	GGTGA	2 cut(s)	260, 542
AvaII	GGWCC	1 cut(s)	586
BalI	TGGCCA	1 cut(s)	207
BanI	GGYRCC	2 cut(s)	68, 131
BanII	GRGCYC	1 cut(s)	312
Bbv12I	GWGCWC	1 cut(s)	312
BbvI	GCAGC	1 cut(s)	635
BciVI	GTATCC	1 cut(s)	720
BclI	TGATCA	1 cut(s)	346
BcoDI	GTCTC	2 cut(s)	35, 259
BfaI	CTAG	1 cut(s)	117
BfuI	GTATCC	1 cut(s)	720
BisI	GCNGC	1 cut(s)	649
BlsI	GCNGC	1 cut(s)	650
BmcAI	AGTACT	2 cut(s)	365, 724
Bme18I	GGWCC	1 cut(s)	586
BmgT120I	GGNCC	2 cut(s)	235, 586
BmiI	GGNNCC	4 cut(s)	70, 133, 331, 587
BmsI	GCATC	1 cut(s)	277
BpuEI	CTTGAG	1 cut(s)	241
BsaHI	GRCGYC	1 cut(s)	252
BsaI	GGTCTC	1 cut(s)	35
BsaJI	CCNNGG	1 cut(s)	193
Bsc4I	CCNNNNNNNGG	2 cut(s)	182, 339
Bse1I	ACTGG	2 cut(s)	208, 532
Bse3DI	GCAATG	1 cut(s)	658
BseDI	CCNNGG	1 cut(s)	193
BseLI	CCNNNNNNNGG	2 cut(s)	182, 339
BseMI	GCAATG	1 cut(s)	658
BseMII	CTCAG	1 cut(s)	381
BseNI	ACTGG	2 cut(s)	208, 532
BseXI	GCAGC	1 cut(s)	635
Bsh1236I	CGCG	2 cut(s)	246, 306
BshFI	GGCC	3 cut(s)	192, 207, 236
BshNI	GGYRCC	2 cut(s)	68, 131
BsiHKAI	GWGCWC	1 cut(s)	312
BslFI	GGGAC	1 cut(s)	599
BslI	CCNNNNNNNGG	2 cut(s)	182, 339
BsmAI	GTCTC	2 cut(s)	35, 259
BsmBI	CGTCTC	1 cut(s)	259
BsmFI	GGGAC	1 cut(s)	599
BsnI	GGCC	3 cut(s)	192, 207, 236
Bso31I	GGTCTC	1 cut(s)	35
Bsp1286I	GDGCHC	1 cut(s)	312
Bsp143I	GATC	1 cut(s)	346
BspACI	CCGC	1 cut(s)	246
BspANI	GGCC	3 cut(s)	192, 207, 236
BspCNI	CTCAG	1 cut(s)	380
BspFNI	CGCG	2 cut(s)	246, 306
BspLI	GGNNCC	4 cut(s)	70, 133, 331, 587
BspT107I	GGYRCC	2 cut(s)	68, 131
BspTNI	GGTCTC	1 cut(s)	35
BsrDI	GCAATG	1 cut(s)	658
BsrI	ACTGG	2 cut(s)	208, 532
BssECI	CCNNGG	1 cut(s)	193
BssMI	GATC	1 cut(s)	346
BssNI	GRCGYC	1 cut(s)	252
BssT1I	CCWWGG	1 cut(s)	193
Bst4CI	ACNGT	2 cut(s)	448, 708
BstACI	GRCGYC	1 cut(s)	252
BstAPI	GCANNNNNTGC	3 cut(s)	68, 267, 276
BstC8I	GCNNGC	2 cut(s)	292, 308
BstDEI	CTNAG	2 cut(s)	34, 367
BstFNI	CGCG	2 cut(s)	246, 306
BstKTI	GATC	1 cut(s)	349
BstMAI	GTCTC	2 cut(s)	35, 259
BstMBI	GATC	1 cut(s)	346
BstMWI	GCNNNNNNNGC	4 cut(s)	68, 267, 276, 312
BstUI	CGCG	2 cut(s)	246, 306
BstV1I	GCAGC	1 cut(s)	635
BstXI	CCANNNNNNTGG	1 cut(s)	227
BsuI	GTATCC	1 cut(s)	720
BsuRI	GGCC	3 cut(s)	192, 207, 236
BtsI	GCAGTG	1 cut(s)	349
BtsIMutI	CAGTG	1 cut(s)	349
Cac8I	GCNNGC	2 cut(s)	292, 308
Cfr13I	GGNCC	2 cut(s)	235, 586
Csp6I	GTAC	3 cut(s)	364, 536, 723
CviAII	CATG	1 cut(s)	209
CviQI	GTAC	3 cut(s)	364, 536, 723
DdeI	CTNAG	2 cut(s)	34, 367
DpnI	GATC	1 cut(s)	348
DpnII	GATC	1 cut(s)	346
DraI	TTTAAA	1 cut(s)	360
EaeI	YGGCCR	1 cut(s)	205
Ecl136II	GAGCTC	1 cut(s)	310
Eco130I	CCWWGG	1 cut(s)	193
Eco24I	GRGCYC	1 cut(s)	312
Eco31I	GGTCTC	1 cut(s)	35
Eco47I	GGWCC	1 cut(s)	586
Eco53kI	GAGCTC	1 cut(s)	310
Eco57I	CTGAAG	1 cut(s)	522
EcoICRI	GAGCTC	1 cut(s)	310
EcoO109I	RGGNCCY	1 cut(s)	586
EcoT14I	CCWWGG	1 cut(s)	193
EcoT38I	GRGCYC	1 cut(s)	312
ErhI	CCWWGG	1 cut(s)	193
Esp3I	CGTCTC	1 cut(s)	259
FaeI	CATG	1 cut(s)	212
FaqI	GGGAC	1 cut(s)	599
FatI	CATG	1 cut(s)	208
FauNDI	CATATG	1 cut(s)	127
FbaI	TGATCA	1 cut(s)	346
Fnu4HI	GCNGC	1 cut(s)	649
FriOI	GRGCYC	1 cut(s)	312
Fsp4HI	GCNGC	1 cut(s)	649
FspBI	CTAG	1 cut(s)	117
GluI	GCNGC	1 cut(s)	649
HaeIII	GGCC	3 cut(s)	192, 207, 236
Hin1I	GRCGYC	1 cut(s)	252
Hin1II	CATG	1 cut(s)	212
HindIII	AAGCTT	1 cut(s)	495
HphI	GGTGA	2 cut(s)	260, 542
Hpy166II	GTNNAC	1 cut(s)	552
Hpy188I	TCNGA	2 cut(s)	370, 502
Hpy188III	TCNNGA	1 cut(s)	617
Hpy8I	GTNNAC	1 cut(s)	552
HpyAV	CCTTC	1 cut(s)	327
HpyCH4III	ACNGT	2 cut(s)	448, 708
HpyCH4IV	ACGT	3 cut(s)	252, 423, 548
HpyCH4V	TGCA	7 cut(s)	62, 270, 290, 579, 626, 651, 656
HpyF10VI	GCNNNNNNNGC	4 cut(s)	68, 267, 276, 312
HpyF3I	CTNAG	2 cut(s)	34, 367
HpySE526I	ACGT	3 cut(s)	252, 423, 548
Hsp92I	GRCGYC	1 cut(s)	252
Hsp92II	CATG	1 cut(s)	212
Ksp22I	TGATCA	1 cut(s)	346
Kzo9I	GATC	1 cut(s)	346
LmnI	GCTCC	2 cut(s)	329, 684
LpnPI	CCDG	6 cut(s)	11, 126, 189, 391, 513, 579
Lsp1109I	GCAGC	1 cut(s)	635
LweI	GCATC	1 cut(s)	277
MaeI	CTAG	1 cut(s)	117
MaeII	ACGT	3 cut(s)	252, 423, 548
MaeIII	GTNAC	1 cut(s)	248
MalI	GATC	1 cut(s)	348
MboI	GATC	1 cut(s)	346
MboII	GAAGA	1 cut(s)	515
MfeI	CAATTG	1 cut(s)	63
MhlI	GDGCHC	1 cut(s)	312
MlsI	TGGCCA	1 cut(s)	207
MluCI	AATT	4 cut(s)	63, 336, 390, 470
MluNI	TGGCCA	1 cut(s)	207
MnlI	CCTC	6 cut(s)	33, 82, 186, 526, 599, 656
Mox20I	TGGCCA	1 cut(s)	207
MscI	TGGCCA	1 cut(s)	207
MseI	TTAA	3 cut(s)	359, 476, 727
Msp20I	TGGCCA	1 cut(s)	207
MunI	CAATTG	1 cut(s)	63
MvnI	CGCG	2 cut(s)	246, 306
MwoI	GCNNNNNNNGC	4 cut(s)	68, 267, 276, 312
NdeI	CATATG	1 cut(s)	127
NdeII	GATC	1 cut(s)	346
NlaIII	CATG	1 cut(s)	212
NlaIV	GGNNCC	4 cut(s)	70, 133, 331, 587
NmuCI	GTSAC	1 cut(s)	248
PcsI	WCGNNNNNNNCGW	1 cut(s)	667
PflMI	CCANNNNNTGG	1 cut(s)	339
PkrI	GCNGC	1 cut(s)	650
PpuMI	RGGWCCY	1 cut(s)	586
Psp124BI	GAGCTC	1 cut(s)	312
Psp5II	RGGWCCY	1 cut(s)	586
PspN4I	GGNNCC	4 cut(s)	70, 133, 331, 587
PspPI	GGNCC	2 cut(s)	235, 586
PspPPI	RGGWCCY	1 cut(s)	586
RsaI	GTAC	3 cut(s)	365, 537, 724
RsaNI	GTAC	3 cut(s)	364, 536, 723
SacI	GAGCTC	1 cut(s)	312
SaqAI	TTAA	3 cut(s)	359, 476, 727
SatI	GCNGC	1 cut(s)	649
Sau3AI	GATC	1 cut(s)	346
Sau96I	GGNCC	2 cut(s)	235, 586
ScaI	AGTACT	2 cut(s)	365, 724
SduI	GDGCHC	1 cut(s)	312
SfaNI	GCATC	1 cut(s)	277
SinI	GGWCC	1 cut(s)	586
SmlI	CTYRAG	1 cut(s)	256
SmoI	CTYRAG	1 cut(s)	256
Sse9I	AATT	4 cut(s)	63, 336, 390, 470
SsiI	CCGC	1 cut(s)	246
SspMI	CTAG	1 cut(s)	117
SstI	GAGCTC	1 cut(s)	312
StyI	CCWWGG	1 cut(s)	193
TaaI	ACNGT	2 cut(s)	448, 708
TaiI	ACGT	3 cut(s)	255, 426, 551
TaqI	TCGA	2 cut(s)	543, 697
TasI	AATT	4 cut(s)	63, 336, 390, 470
TatI	WGTACW	2 cut(s)	363, 722
Tru1I	TTAA	3 cut(s)	359, 476, 727
Tru9I	TTAA	3 cut(s)	359, 476, 727
TscAI	CASTG	1 cut(s)	356
TseFI	GTSAC	1 cut(s)	248
TseI	GCWGC	1 cut(s)	648
Tsp45I	GTSAC	1 cut(s)	248
TspDTI	ATGAA	1 cut(s)	507
TspRI	CASTG	1 cut(s)	356
Van91I	CCANNNNNTGG	1 cut(s)	339
VpaK11BI	GGWCC	1 cut(s)	586
XcmI	CCANNNNNNNNNTGG	1 cut(s)	62
XspI	CTAG	1 cut(s)	117
ZraI	GACGTC	1 cut(s)	253
ZrmI	AGTACT	2 cut(s)	365, 724

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.