Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000899

Physical Location & Seq

Genomic Coordinates Reverse (-)

12708655 .. 12710419

Gene Structure 1765 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00091070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGAGTCTTTGTGATGATCGGTTGGATGATTGCTATCGTGTAATGACCGGTGATATATGTGTGATGCATCCGTGTGATGATCGCTATCTATGTGATGACCAGCGATATCCGTGTGATGATCGCTATCCGTGTGATGAACGACGATATCTATCCTCAGGTGCTTCCCCACTTCATCATATCTGTTTCAGCAAGGCAAACTACACTGGCAGTAGTCCATACCATGCTAACTTGAACACGATGCTCAATCATTTATCCACCAAAGTCCCTCCAACTGGATTCGGGGTTGCTTCAAGTGGTCTAGGTCCGAACAAAGTAAACGGACGAGCGCTATGCCGGGGCGATGTCTCAAGCCCAAAGTGTAAGACTTGTGTCATTGAAGCAAGCAAAGAGCTTCGTGCACGCTGCCCTCATAAAAGGGAGCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0030312 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071944 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1204 Stress-antifung

Protein Analysis

141

Amino Acids

15.73

Weight (kDa)

7.97

Isoelectric Point (pI)

49.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stress-antifung	PF01657	61 - 140	1.4e-15	Salt stress response/antifungal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000899)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22060
fragaria_vesca	FvH4_2g10161
malus_domestica	MD05G1056000.v1.1 MD05G1056300.v1.1 MD10G1064400.v1.1
prunus_persica	Prupe.3G109800_v2.0.a1 Prupe.3G110100_v2.0.a1 Prupe.3G110200_v2.0.a1 Prupe.3G110300_v2.0.a1 Prupe.8G086600_v2.0.a1
pyrus_communis	pycom05g04770 pycom05g04780
rosa_chinensis	RchiOBHm_Chr1g0328011 RchiOBHm_Chr1g0328031 RchiOBHm_Chr2g0158681 RchiOBHm_Chr2g0160231 RchiOBHm_Chr2g0160251
rosa_laevigata	RLG00000014015 RLG00000021106 RLG00000021206 RLG00000021207 RLG00000029943 RLG00000029944 RLG00000029946 RLG00000029948
rosa_multiflora	Rmu_co8269469.1_g000001 Rmu_co8408147.1_g000001 Rmu_sc0000403.1_g000003 Rmu_sc0008269.1_g000008 Rmu_sc0020806.1_g000002
rosa_roxburghii	Rroxscaffold_2G00091070 Rroxscaffold_2G00091110 Rroxscaffold_4G00321960 Rroxscaffold_4G00321970 Rroxscaffold_4G00321980 Rroxscaffold_4G00322000 Rroxscaffold_4G00322030 Rroxscaffold_7G00200860 Rroxscaffold_7G00200940
rosa_rugosa	Rorug01G0073200 Rorug01G0073200 Rorug01G0073300 Rorug02G0471400 Rorug02G0472000 Rorug02G0482400 Rorug02G0482400
rosa_samantha	Rh1BG071900 Rh1BG072100 Rh2AG537200 Rh2AG547800 Rh2BG550400 Rh2BG561200 Rh2BG561400 Rh2CG520900 Rh2CG531800 Rh2CG532100 Rh6AG153200 Rh6CG149000
rosa_wichuraiana	Rw0G019500 Rw1G006970 Rw1G006980 Rw1G006990 Rw2G044480 Rw2G045320 Rw6G013180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfeI	AGCGCT	1 cut(s)	327
AfiI	CCNNNNNNNGG	1 cut(s)	272
AgeI	ACCGGT	1 cut(s)	47
AgsI	TTSAA	3 cut(s)	232, 291, 377
AluBI	AGCT	1 cut(s)	391
AluI	AGCT	1 cut(s)	391
Alw21I	GWGCWC	1 cut(s)	400
Alw26I	GTCTC	1 cut(s)	349
Alw44I	GTGCAC	1 cut(s)	396
Aor51HI	AGCGCT	1 cut(s)	327
ApaLI	GTGCAC	1 cut(s)	396
ApeKI	GCWGC	1 cut(s)	402
AsiGI	ACCGGT	1 cut(s)	47
AspLEI	GCGC	1 cut(s)	328
AspS9I	GGNCC	1 cut(s)	302
AsuC2I	CCSGG	1 cut(s)	335
AsuHPI	GGTGA	1 cut(s)	62
AvaII	GGWCC	1 cut(s)	302
AxyI	CCTNAGG	1 cut(s)	154
BaeGI	GKGCMC	1 cut(s)	400
Bbv12I	GWGCWC	1 cut(s)	400
BbvI	GCAGC	1 cut(s)	389
BcgI	CGANNNNNNTGC	2 cut(s)	312, 346
BcnI	CCSGG	1 cut(s)	335
BcoDI	GTCTC	1 cut(s)	349
BfaI	CTAG	1 cut(s)	299
BfoI	RGCGCY	1 cut(s)	329
BisI	GCNGC	1 cut(s)	403
BlsI	GCNGC	1 cut(s)	404
Bme1390I	CCNGG	1 cut(s)	335
Bme18I	GGWCC	1 cut(s)	302
BmgT120I	GGNCC	1 cut(s)	302
BmiI	GGNNCC	1 cut(s)	420
BmrFI	CCNGG	1 cut(s)	335
BmsI	GCATC	3 cut(s)	54, 76, 228
BoxI	GACNNNNGTC	1 cut(s)	368
BpuEI	CTTGAG	1 cut(s)	331
BpuMI	CCSGG	1 cut(s)	335
BsaBI	GATNNNNATC	4 cut(s)	33, 84, 123, 148
BsaJI	CCNNGG	1 cut(s)	334
BsaWI	WCCGGW	1 cut(s)	47
Bsc4I	CCNNNNNNNGG	1 cut(s)	272
Bse118I	RCCGGY	1 cut(s)	47
Bse1I	ACTGG	2 cut(s)	208, 277
Bse21I	CCTNAGG	1 cut(s)	154
Bse8I	GATNNNNATC	4 cut(s)	33, 84, 123, 148
BseDI	CCNNGG	1 cut(s)	334
BseGI	GGATG	2 cut(s)	31, 67
BseJI	GATNNNNATC	4 cut(s)	33, 84, 123, 148
BseLI	CCNNNNNNNGG	1 cut(s)	272
BseMII	CTCAG	1 cut(s)	168
BseNI	ACTGG	2 cut(s)	208, 277
BseSI	GKGCMC	1 cut(s)	400
BseXI	GCAGC	1 cut(s)	389
BshTI	ACCGGT	1 cut(s)	47
BsiHKAI	GWGCWC	1 cut(s)	400
BsiSI	CCGG	2 cut(s)	48, 334
BslFI	GGGAC	1 cut(s)	248
BslI	CCNNNNNNNGG	1 cut(s)	272
BsmAI	GTCTC	1 cut(s)	349
BsmFI	GGGAC	1 cut(s)	248
Bsp1286I	GDGCHC	1 cut(s)	400
Bsp143I	GATC	3 cut(s)	16, 79, 118
BspCNI	CTCAG	1 cut(s)	167
BspLI	GGNNCC	1 cut(s)	420
BsrFI	RCCGGY	1 cut(s)	47
BsrI	ACTGG	2 cut(s)	208, 277
BssAI	RCCGGY	1 cut(s)	47
BssECI	CCNNGG	1 cut(s)	334
BssMI	GATC	3 cut(s)	16, 79, 118
BstC8I	GCNNGC	2 cut(s)	382, 400
BstDEI	CTNAG	1 cut(s)	154
BstF5I	GGATG	2 cut(s)	31, 67
BstH2I	RGCGCY	1 cut(s)	329
BstHHI	GCGC	1 cut(s)	328
BstKTI	GATC	3 cut(s)	19, 82, 121
BstMAI	GTCTC	1 cut(s)	349
BstMBI	GATC	3 cut(s)	16, 79, 118
BstPAI	GACNNNNGTC	1 cut(s)	368
BstSCI	CCNGG	1 cut(s)	333
BstSLI	GKGCMC	1 cut(s)	400
BstV1I	GCAGC	1 cut(s)	389
Bsu36I	CCTNAGG	1 cut(s)	154
BtgZI	GCGATG	1 cut(s)	354
BtsCI	GGATG	2 cut(s)	31, 67
BtsIMutI	CAGTG	1 cut(s)	201
Cac8I	GCNNGC	2 cut(s)	382, 400
CfoI	GCGC	1 cut(s)	328
Cfr10I	RCCGGY	1 cut(s)	47
Cfr13I	GGNCC	1 cut(s)	302
CspAI	ACCGGT	1 cut(s)	47
CviAII	CATG	1 cut(s)	221
CviJI	RGCY	3 cut(s)	351, 391, 421
CviKI_1	RGCY	3 cut(s)	351, 391, 421
DdeI	CTNAG	1 cut(s)	154
DpnI	GATC	3 cut(s)	18, 81, 120
DpnII	GATC	3 cut(s)	16, 79, 118
Eco32I	GATATC	2 cut(s)	107, 146
Eco47I	GGWCC	1 cut(s)	302
Eco47III	AGCGCT	1 cut(s)	327
Eco81I	CCTNAGG	1 cut(s)	154
EcoRV	GATATC	2 cut(s)	107, 146
EcoT22I	ATGCAT	1 cut(s)	69
FaeI	CATG	1 cut(s)	224
FaiI	YATR	9 cut(s)	56, 58, 91, 177, 217, 222, 331, 411, 424
FaqI	GGGAC	1 cut(s)	248
FatI	CATG	1 cut(s)	220
Fnu4HI	GCNGC	1 cut(s)	403
FokI	GGATG	2 cut(s)	38, 54
Fsp4HI	GCNGC	1 cut(s)	403
FspBI	CTAG	1 cut(s)	299
GlaI	GCGC	1 cut(s)	327
GluI	GCNGC	1 cut(s)	403
HaeII	RGCGCY	1 cut(s)	329
HapII	CCGG	2 cut(s)	48, 334
HhaI	GCGC	1 cut(s)	328
Hin1II	CATG	1 cut(s)	224
Hin6I	GCGC	1 cut(s)	326
HinP1I	GCGC	1 cut(s)	326
HinfI	GANTC	2 cut(s)	4, 276
HpaII	CCGG	2 cut(s)	48, 334
HphI	GGTGA	1 cut(s)	62
Hpy166II	GTNNAC	2 cut(s)	316, 398
Hpy188I	TCNGA	1 cut(s)	306
Hpy8I	GTNNAC	2 cut(s)	316, 398
Hpy99I	CGWCG	1 cut(s)	144
HpyCH4V	TGCA	2 cut(s)	67, 398
HpyF3I	CTNAG	1 cut(s)	154
Hsp92II	CATG	1 cut(s)	224
HspAI	GCGC	1 cut(s)	326
Kzo9I	GATC	3 cut(s)	16, 79, 118
LmnI	GCTCC	1 cut(s)	418
LpnPI	CCDG	6 cut(s)	61, 113, 141, 189, 258, 347
Lsp1109I	GCAGC	1 cut(s)	389
LweI	GCATC	3 cut(s)	54, 76, 228
MaeI	CTAG	1 cut(s)	299
MalI	GATC	3 cut(s)	18, 81, 120
MboI	GATC	3 cut(s)	16, 79, 118
MhlI	GDGCHC	1 cut(s)	400
MlyI	GAGTC	1 cut(s)	13
MmeI	TCCRAC	1 cut(s)	293
MnlI	CCTC	3 cut(s)	163, 276, 417
Mph1103I	ATGCAT	1 cut(s)	69
MslI	CAYNNNNRTG	1 cut(s)	72
MspI	CCGG	2 cut(s)	48, 334
MspR9I	CCNGG	1 cut(s)	335
NciI	CCSGG	1 cut(s)	335
NdeII	GATC	3 cut(s)	16, 79, 118
NlaIII	CATG	1 cut(s)	224
NlaIV	GGNNCC	1 cut(s)	420
NsiI	ATGCAT	1 cut(s)	69
PfeI	GAWTC	1 cut(s)	276
PinAI	ACCGGT	1 cut(s)	47
PkrI	GCNGC	1 cut(s)	404
PleI	GAGTC	1 cut(s)	12
PpsI	GAGTC	1 cut(s)	12
PshAI	GACNNNNGTC	1 cut(s)	368
PspN4I	GGNNCC	1 cut(s)	420
PspPI	GGNCC	1 cut(s)	302
RseI	CAYNNNNRTG	1 cut(s)	72
SatI	GCNGC	1 cut(s)	403
Sau3AI	GATC	3 cut(s)	16, 79, 118
Sau96I	GGNCC	1 cut(s)	302
SchI	GAGTC	1 cut(s)	13
ScrFI	CCNGG	1 cut(s)	335
SduI	GDGCHC	1 cut(s)	400
SetI	ASST	3 cut(s)	160, 304, 393
SfaNI	GCATC	3 cut(s)	54, 76, 228
SinI	GGWCC	1 cut(s)	302
SmiMI	CAYNNNNRTG	1 cut(s)	72
SmlI	CTYRAG	1 cut(s)	346
SmoI	CTYRAG	1 cut(s)	346
SspMI	CTAG	1 cut(s)	299
StyD4I	CCNGG	1 cut(s)	333
TfiI	GAWTC	1 cut(s)	276
TscAI	CASTG	1 cut(s)	208
TseI	GCWGC	1 cut(s)	402
TspDTI	ATGAA	2 cut(s)	150, 161
TspGWI	ACGGA	4 cut(s)	60, 99, 117, 333
TspRI	CASTG	1 cut(s)	208
VneI	GTGCAC	1 cut(s)	396
VpaK11BI	GGWCC	1 cut(s)	302
XspI	CTAG	1 cut(s)	299
Zsp2I	ATGCAT	1 cut(s)	69

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.