Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000899

Physical Location & Seq

Genomic Coordinates Reverse (-)

51624240 .. 51624956

Gene Structure 717 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00321960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGTTTTCCAAATCAATCCCTCTGTCTTTCTTGCTCTTCTGTCTTTTGCACCATGCAGCCTCTGGTGCTTCCCCACTTTATCATATCTGTTTCAGCAAGGCAAACTACACTGGTAGTAGTCCATACCATGCTAACTTGGACACGATGCTCAATCATTTATCCACCAAAGTCCCTCCAACTGGATTCGGGGTTGCTTCAACTGGTCAAGGTCCGAACAAAGTAAACGGACTAGCGCTATGCCGAGGCGATGTCTCAAGCCCAAAGTGTAAGACTTGTATCATTGAAGCAAGCAAAGGGCTTCGTGCACGCTGCCCTCATAAAAAAGGAGCCATAATATGGTACGACCATTGCATGCTGAAATACTCAAATGGCAACTTCTTTGGGCAAATTGATACCACAAACAAGTTCTATATGTGGAATACGGAGACAGTAAGCAATCCCAGACCATTCAATAAGAATGTTAAGAAATTGTTGAGTGGGTTGTCTAATAAAGCTTCTTCTAACCGAAAGCTTTATAGTACTGGTGAGCTACAGCTCGATAAATGGAAAAAATTGTATGGTTTAGTTCAGTGCACGAGGGACCTATCTCGCCTGGAATGTAAGAAGTGTCTTGATGCTGCAATAAGTGAACTGCCGAATGGTTCTGATGCGAAACGAGGCGGGCGCATAGCAAGTGGGAGTTGTAACTTTCGATATGAACTCTCCCGCTTTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0030312 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071944 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1204 Stress-antifung

Protein Analysis

238

Amino Acids

26.3

Weight (kDa)

9.62

Isoelectric Point (pI)

37.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stress-antifung	PF01657	30 - 123	7.9e-25	Salt stress response/antifungal
Stress-antifung	PF01657	143 - 234	4.2e-14	Salt stress response/antifungal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000899)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22060
fragaria_vesca	FvH4_2g10161
malus_domestica	MD05G1056000.v1.1 MD05G1056300.v1.1 MD10G1064400.v1.1
prunus_persica	Prupe.3G109800_v2.0.a1 Prupe.3G110100_v2.0.a1 Prupe.3G110200_v2.0.a1 Prupe.3G110300_v2.0.a1 Prupe.8G086600_v2.0.a1
pyrus_communis	pycom05g04770 pycom05g04780
rosa_chinensis	RchiOBHm_Chr1g0328011 RchiOBHm_Chr1g0328031 RchiOBHm_Chr2g0158681 RchiOBHm_Chr2g0160231 RchiOBHm_Chr2g0160251
rosa_laevigata	RLG00000014015 RLG00000021106 RLG00000021206 RLG00000021207 RLG00000029943 RLG00000029944 RLG00000029946 RLG00000029948
rosa_multiflora	Rmu_co8269469.1_g000001 Rmu_co8408147.1_g000001 Rmu_sc0000403.1_g000003 Rmu_sc0008269.1_g000008 Rmu_sc0020806.1_g000002
rosa_roxburghii	Rroxscaffold_2G00091070 Rroxscaffold_2G00091110 Rroxscaffold_4G00321960 Rroxscaffold_4G00321970 Rroxscaffold_4G00321980 Rroxscaffold_4G00322000 Rroxscaffold_4G00322030 Rroxscaffold_7G00200860 Rroxscaffold_7G00200940
rosa_rugosa	Rorug01G0073200 Rorug01G0073200 Rorug01G0073300 Rorug02G0471400 Rorug02G0472000 Rorug02G0482400 Rorug02G0482400
rosa_samantha	Rh1BG071900 Rh1BG072100 Rh2AG537200 Rh2AG547800 Rh2BG550400 Rh2BG561200 Rh2BG561400 Rh2CG520900 Rh2CG531800 Rh2CG532100 Rh6AG153200 Rh6CG149000
rosa_wichuraiana	Rw0G019500 Rw1G006970 Rw1G006980 Rw1G006990 Rw2G044480 Rw2G045320 Rw6G013180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	336
AciI	CCGC	2 cut(s)	660, 706
AfaI	GTAC	2 cut(s)	341, 520
AfeI	AGCGCT	1 cut(s)	234
AfiI	CCNNNNNNNGG	2 cut(s)	179, 336
AgsI	TTSAA	3 cut(s)	198, 284, 451
AjnI	CCWGG	1 cut(s)	591
AluBI	AGCT	4 cut(s)	494, 511, 529, 535
AluI	AGCT	4 cut(s)	494, 511, 529, 535
Alw21I	GWGCWC	2 cut(s)	307, 575
Alw26I	GTCTC	2 cut(s)	256, 419
Alw44I	GTGCAC	2 cut(s)	303, 571
AlwNI	CAGNNNCTG	1 cut(s)	62
Aor51HI	AGCGCT	1 cut(s)	234
ApaLI	GTGCAC	2 cut(s)	303, 571
ApeKI	GCWGC	3 cut(s)	56, 309, 617
AspLEI	GCGC	2 cut(s)	235, 666
AspS9I	GGNCC	2 cut(s)	209, 580
AsuHPI	GGTGA	1 cut(s)	536
AvaII	GGWCC	2 cut(s)	209, 580
BaeGI	GKGCMC	2 cut(s)	307, 575
BauI	CACGAG	1 cut(s)	574
Bbv12I	GWGCWC	2 cut(s)	307, 575
BbvI	GCAGC	3 cut(s)	68, 296, 604
BciT130I	CCWGG	1 cut(s)	593
BcoDI	GTCTC	2 cut(s)	256, 419
BfaI	CTAG	1 cut(s)	230
BfmI	CTRYAG	1 cut(s)	530
BfoI	RGCGCY	1 cut(s)	236
BisI	GCNGC	3 cut(s)	57, 310, 618
BlsI	GCNGC	3 cut(s)	58, 311, 619
BmcAI	AGTACT	1 cut(s)	520
Bme1390I	CCNGG	1 cut(s)	593
Bme18I	GGWCC	2 cut(s)	209, 580
BmgT120I	GGNCC	2 cut(s)	209, 580
BmiI	GGNNCC	2 cut(s)	328, 581
BmrFI	CCNGG	1 cut(s)	593
BmsI	GCATC	3 cut(s)	135, 604, 637
BpuEI	CTTGAG	1 cut(s)	238
BsaJI	CCNNGG	1 cut(s)	241
Bsc4I	CCNNNNNNNGG	2 cut(s)	179, 336
Bse1I	ACTGG	4 cut(s)	115, 184, 205, 526
Bse3DI	GCAATG	1 cut(s)	346
BseBI	CCWGG	1 cut(s)	593
BseDI	CCNNGG	1 cut(s)	241
BseLI	CCNNNNNNNGG	2 cut(s)	179, 336
BseMI	GCAATG	1 cut(s)	346
BseNI	ACTGG	4 cut(s)	115, 184, 205, 526
BseSI	GKGCMC	2 cut(s)	307, 575
BseXI	GCAGC	3 cut(s)	68, 296, 604
BsiHKAI	GWGCWC	2 cut(s)	307, 575
BslFI	GGGAC	2 cut(s)	155, 593
BslI	CCNNNNNNNGG	2 cut(s)	179, 336
BsmAI	GTCTC	2 cut(s)	256, 419
BsmFI	GGGAC	2 cut(s)	155, 593
Bsp1286I	GDGCHC	2 cut(s)	307, 575
BspACI	CCGC	2 cut(s)	660, 706
BspLI	GGNNCC	2 cut(s)	328, 581
BspQI	GCTCTTC	1 cut(s)	41
BsrDI	GCAATG	1 cut(s)	346
BsrI	ACTGG	4 cut(s)	115, 184, 205, 526
BssECI	CCNNGG	1 cut(s)	241
BssSI	CACGAG	1 cut(s)	574
Bst2BI	CACGAG	1 cut(s)	574
Bst2UI	CCWGG	1 cut(s)	593
Bst4CI	ACNGT	1 cut(s)	430
Bst6I	CTCTTC	1 cut(s)	41
BstC8I	GCNNGC	4 cut(s)	289, 307, 353, 662
BstH2I	RGCGCY	1 cut(s)	236
BstHHI	GCGC	2 cut(s)	235, 666
BstMAI	GTCTC	2 cut(s)	256, 419
BstMWI	GCNNNNNNNGC	1 cut(s)	65
BstNI	CCWGG	1 cut(s)	593
BstNSI	RCATGY	1 cut(s)	355
BstSCI	CCNGG	1 cut(s)	591
BstSFI	CTRYAG	1 cut(s)	530
BstSLI	GKGCMC	2 cut(s)	307, 575
BstV1I	GCAGC	3 cut(s)	68, 296, 604
BtgZI	GCGATG	1 cut(s)	261
BtsIMutI	CAGTG	2 cut(s)	108, 575
Cac8I	GCNNGC	4 cut(s)	289, 307, 353, 662
CaiI	CAGNNNCTG	1 cut(s)	62
CfoI	GCGC	2 cut(s)	235, 666
Cfr13I	GGNCC	2 cut(s)	209, 580
Csp6I	GTAC	2 cut(s)	340, 519
CviAII	CATG	3 cut(s)	53, 128, 352
CviJI	RGCY	8 cut(s)	59, 258, 298, 329, 494, 511, 529, 535
CviKI_1	RGCY	8 cut(s)	59, 258, 298, 329, 494, 511, 529, 535
CviQI	GTAC	2 cut(s)	340, 519
Eam1104I	CTCTTC	1 cut(s)	41
EarI	CTCTTC	1 cut(s)	41
Eco47I	GGWCC	2 cut(s)	209, 580
Eco47III	AGCGCT	1 cut(s)	234
EcoO109I	RGGNCCY	1 cut(s)	580
EcoRII	CCWGG	1 cut(s)	591
FaeI	CATG	3 cut(s)	56, 131, 355
FaqI	GGGAC	2 cut(s)	155, 593
FatI	CATG	3 cut(s)	52, 127, 351
FauI	CCCGC	2 cut(s)	653, 713
Fnu4HI	GCNGC	3 cut(s)	57, 310, 618
Fsp4HI	GCNGC	3 cut(s)	57, 310, 618
FspBI	CTAG	1 cut(s)	230
GlaI	GCGC	2 cut(s)	234, 665
GluI	GCNGC	3 cut(s)	57, 310, 618
HaeII	RGCGCY	1 cut(s)	236
HhaI	GCGC	2 cut(s)	235, 666
Hin1II	CATG	3 cut(s)	56, 131, 355
Hin6I	GCGC	2 cut(s)	233, 664
HinP1I	GCGC	2 cut(s)	233, 664
HindIII	AAGCTT	2 cut(s)	492, 509
HinfI	GANTC	1 cut(s)	183
HphI	GGTGA	1 cut(s)	536
Hpy166II	GTNNAC	4 cut(s)	223, 305, 573, 629
Hpy188I	TCNGA	2 cut(s)	213, 646
Hpy188III	TCNNGA	1 cut(s)	611
Hpy8I	GTNNAC	4 cut(s)	223, 305, 573, 629
HpyCH4III	ACNGT	1 cut(s)	430
HpyCH4V	TGCA	6 cut(s)	49, 56, 305, 351, 573, 620
HpyF10VI	GCNNNNNNNGC	1 cut(s)	65
Hsp92II	CATG	3 cut(s)	56, 131, 355
HspAI	GCGC	2 cut(s)	233, 664
LguI	GCTCTTC	1 cut(s)	41
LmnI	GCTCC	1 cut(s)	326
LpnPI	CCDG	8 cut(s)	48, 96, 165, 186, 454, 507, 578, 605
Lsp1109I	GCAGC	3 cut(s)	68, 296, 604
LweI	GCATC	3 cut(s)	135, 604, 637
MaeI	CTAG	1 cut(s)	230
MaeIII	GTNAC	1 cut(s)	683
MboII	GAAGA	2 cut(s)	28, 489
MhlI	GDGCHC	2 cut(s)	307, 575
MluCI	AATT	3 cut(s)	387, 467, 551
MmeI	TCCRAC	1 cut(s)	200
MnlI	CCTC	7 cut(s)	30, 70, 183, 236, 324, 570, 650
MseI	TTAA	1 cut(s)	462
MspR9I	CCNGG	1 cut(s)	593
MvaI	CCWGG	1 cut(s)	593
MwoI	GCNNNNNNNGC	1 cut(s)	65
NlaIII	CATG	3 cut(s)	56, 131, 355
NlaIV	GGNNCC	2 cut(s)	328, 581
NmeAIII	GCCGAG	1 cut(s)	266
NspI	RCATGY	1 cut(s)	355
PaeI	GCATGC	1 cut(s)	355
PciSI	GCTCTTC	1 cut(s)	41
PfeI	GAWTC	1 cut(s)	183
PflMI	CCANNNNNTGG	1 cut(s)	336
PkrI	GCNGC	3 cut(s)	58, 311, 619
PpuMI	RGGWCCY	1 cut(s)	580
Psp5II	RGGWCCY	1 cut(s)	580
Psp6I	CCWGG	1 cut(s)	591
PspGI	CCWGG	1 cut(s)	591
PspN4I	GGNNCC	2 cut(s)	328, 581
PspPI	GGNCC	2 cut(s)	209, 580
PspPPI	RGGWCCY	1 cut(s)	580
PstNI	CAGNNNCTG	1 cut(s)	62
RsaI	GTAC	2 cut(s)	341, 520
RsaNI	GTAC	2 cut(s)	340, 519
SapI	GCTCTTC	1 cut(s)	41
SaqAI	TTAA	1 cut(s)	462
SatI	GCNGC	3 cut(s)	57, 310, 618
Sau96I	GGNCC	2 cut(s)	209, 580
ScaI	AGTACT	1 cut(s)	520
ScrFI	CCNGG	1 cut(s)	593
SduI	GDGCHC	2 cut(s)	307, 575
SetI	ASST	6 cut(s)	211, 496, 513, 531, 537, 585
SfaNI	GCATC	3 cut(s)	135, 604, 637
SfcI	CTRYAG	1 cut(s)	530
SinI	GGWCC	2 cut(s)	209, 580
SmlI	CTYRAG	1 cut(s)	253
SmoI	CTYRAG	1 cut(s)	253
SphI	GCATGC	1 cut(s)	355
Sse9I	AATT	3 cut(s)	387, 467, 551
SsiI	CCGC	2 cut(s)	660, 706
SspMI	CTAG	1 cut(s)	230
StyD4I	CCNGG	1 cut(s)	591
TaaI	ACNGT	1 cut(s)	430
TaqI	TCGA	2 cut(s)	537, 691
TasI	AATT	3 cut(s)	387, 467, 551
TatI	WGTACW	1 cut(s)	518
TfiI	GAWTC	1 cut(s)	183
Tru1I	TTAA	1 cut(s)	462
Tru9I	TTAA	1 cut(s)	462
TscAI	CASTG	2 cut(s)	115, 575
TseI	GCWGC	3 cut(s)	56, 309, 617
TspDTI	ATGAA	1 cut(s)	711
TspGWI	ACGGA	2 cut(s)	240, 437
TspRI	CASTG	2 cut(s)	115, 575
Van91I	CCANNNNNTGG	1 cut(s)	336
VneI	GTGCAC	2 cut(s)	303, 571
VpaK11BI	GGWCC	2 cut(s)	209, 580
XceI	RCATGY	1 cut(s)	355
XcmI	CCANNNNNNNNNTGG	1 cut(s)	59
XspI	CTAG	1 cut(s)	230
ZrmI	AGTACT	1 cut(s)	520

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.