Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000899

Physical Location & Seq

Genomic Coordinates Reverse (-)

60329658 .. 60337345

Gene Structure 7688 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0472000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1665 bp

ATGCCCATTATGGAAAATGACAATTCTAATGTTTCGCGAGCTGAAGAAATTAAGCTTCTTGCAAATGAAGCATTTAAAGCCCATAAATATTCTCAGGCTATTGATCTGTACACCCAAGCGATTGAACTAAACAGCAAGAATGCCGTATACTATGCGAATCGTTCGTTTGCTCACCTTAAACTGGAGGAATATGGAAGTGCCATACAAGATGCTTCAATGGCTATTGAAGTTGATCCTAGATATTCAAAGGGATACTACAGGCGAGGTGCAGCTTCTCTTGCTATGGGGAAATTCAAAGAGGCACTAAAAGATTTCCAGCAGGTTAAAAAAATCTGTCCAAATGATCCTGATGCTACCAAGAAACTGAAGGAATGTGAGAAGGCAGTGATGAAGCTTAAATTTGCTGAGGCAATTTCTGTACCAGAGTCTCAAAGGCGTCCCATAGCTGATTCTATTAATTATCGTTCTATAGGAACGGGTCCCAGTTCATCATCAGTGCCCACCGAAGTTACCGTAGCAGTTCTGGCAATAGCAGTTGGGGTAGCGATGGTTATGATGGGAACAGCAGTGGCTGCAGTTGTGGCCACAATAGTGGTGGTAGTCATGGTGGTCCTGGGGGCACGTTGGTGGCGTGGCTTCCGTGGTGGGGTTTATACCACAAGTCAAGTAAATGACCTAGAAGTGGAGCCACAATATTCTGGTGCAAGGATAGAAGGAGATGTTGTTACTTTGGATTTTGTGAAGAAAATGATGGAGGATTTTAAGAATCAGAAGACTTTACACCAAAGATATGCATTCCAAATTGTGTTACAAACGAAAGAAATGTTGCAAACGCTGCCTTCTCTTGTTGATATAAATGTTCCAAATGGCAACCATTTTACTGTTTGTGGGGACGTACATGGTCAGTTCTACGATCTCCTAAATATTTTTGAGCTTAATGGGCTTCCTTCAGAGGAGAATCCCTATCTATTCAATGGTGATTTTGTGGACAGAGGATCATTTTCGCTGGAGGTCATTCTAACACTGTTTGCATTTAAGTGCATGTCTCCATCAGCAATATATCTTGCAAGGGGGAACCATGAAAGCAAAAGCATGAACAGGATATATGGTTTTGAGGGCGAGGTCCAGTCCAAGTTAAGCGAAAAATTTGTGGAACTATTTGCTGAAGTGTTTTGTTGTTTACCGTTGGCTCATGTAATAAATGGCAAGGTGTTTGTAGTTCATGGGGGTCTTTTTAGTGTCGATGGGGTGAAACTGAGTGATATTAGAGCAATAAACCGGTTTTGTGAACCTCCTGAGGAAGGATTGATGTGTGAATTGCTATGGAGTGATCCACAACCTGCCCCTGGAAGAGGCCCTAGCAAGCGAGGTGTAGGTCTTTCTTTTGGTGGTGATGTGACAAAAAGATTTTTGCAGGACAACAATTTAGATTTAGTTGTGCGCTCTCATGAAGTAAAGGATGAGGGATATGAGATTGAGCATGATGGTAAACTCATCACTGTTTTTTCTGCTCCAAATTACTGTGATCAGATGGGTAACAAAGGCGCCTTTATCCGTTTCGAAGCACCAGATTTGAAGCCAAATATAGTCACTTTTTCAGCAGTGCCGCATCCTGATGTGAAGCCAATGGCATATGCGAATAACTTCCTCCGACTCTTTCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0007049 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009653 GO:0009832 GO:0009833 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0012505 GO:0016020 GO:0016049 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016759 GO:0021700 GO:0022402 GO:0022622 GO:0030154 GO:0030243 GO:0030244 GO:0032501 GO:0032502 GO:0033692 GO:0034637 GO:0034645 GO:0040007 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0051273 GO:0051274 GO:0051301 GO:0060560 GO:0061640 GO:0071554 GO:0071669 GO:0071695 GO:0071704 GO:0071840 GO:0071944 GO:0080147 GO:0090558 GO:0090627 GO:0099402 GO:1901576 GO:1903047 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt

Protein Analysis

554

Amino Acids

61.59

Weight (kDa)

5.96

Isoelectric Point (pI)

35.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_BSK1_C	PF25575	13 - 86	2.5e-08	Serine/threonine-protein kinase BSK1-like, TPR repeats
TPR_1	PF00515	83 - 115	2.8e-07	Tetratricopeptide repeat
TPR_2	PF07719	83 - 115	7.2e-06	Tetratricopeptide repeat
PPP5	PF08321	219 - 284	1.9e-19	PPP5 TPR repeat region
Metallophos	PF00149	293 - 486	1.4e-38	Calcineurin-like phosphoesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000899)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22060
fragaria_vesca	FvH4_2g10161
malus_domestica	MD05G1056000.v1.1 MD05G1056300.v1.1 MD10G1064400.v1.1
prunus_persica	Prupe.3G109800_v2.0.a1 Prupe.3G110100_v2.0.a1 Prupe.3G110200_v2.0.a1 Prupe.3G110300_v2.0.a1 Prupe.8G086600_v2.0.a1
pyrus_communis	pycom05g04770 pycom05g04780
rosa_chinensis	RchiOBHm_Chr1g0328011 RchiOBHm_Chr1g0328031 RchiOBHm_Chr2g0158681 RchiOBHm_Chr2g0160231 RchiOBHm_Chr2g0160251
rosa_laevigata	RLG00000014015 RLG00000021106 RLG00000021206 RLG00000021207 RLG00000029943 RLG00000029944 RLG00000029946 RLG00000029948
rosa_multiflora	Rmu_co8269469.1_g000001 Rmu_co8408147.1_g000001 Rmu_sc0000403.1_g000003 Rmu_sc0008269.1_g000008 Rmu_sc0020806.1_g000002
rosa_roxburghii	Rroxscaffold_2G00091070 Rroxscaffold_2G00091110 Rroxscaffold_4G00321960 Rroxscaffold_4G00321970 Rroxscaffold_4G00321980 Rroxscaffold_4G00322000 Rroxscaffold_4G00322030 Rroxscaffold_7G00200860 Rroxscaffold_7G00200940
rosa_rugosa	Rorug01G0073200 Rorug01G0073200 Rorug01G0073300 Rorug02G0471400 Rorug02G0472000 Rorug02G0482400 Rorug02G0482400
rosa_samantha	Rh1BG071900 Rh1BG072100 Rh2AG537200 Rh2AG547800 Rh2BG550400 Rh2BG561200 Rh2BG561400 Rh2CG520900 Rh2CG531800 Rh2CG532100 Rh6AG153200 Rh6CG149000
rosa_wichuraiana	Rw0G019500 Rw1G006970 Rw1G006980 Rw1G006990 Rw2G044480 Rw2G045320 Rw6G013180

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	310, 1348
AccB1I	GGYRCC	1 cut(s)	1544
AccI	GTMKAC	1 cut(s)	147
AccII	CGCG	1 cut(s)	37
AciI	CCGC	1 cut(s)	1607
AclWI	GGATC	4 cut(s)	227, 338, 1003, 1325
AcoI	YGGCCR	1 cut(s)	582
AcsI	RAATTY	3 cut(s)	290, 398, 1145
AcuI	CTGAAG	4 cut(s)	63, 386, 933, 1185
AcyI	GRCGYC	2 cut(s)	436, 1545
AfaI	GTAC	3 cut(s)	110, 420, 897
AfiI	CCNNNNNNNGG	6 cut(s)	181, 646, 682, 1301, 1346, 1352
AgeI	ACCGGT	1 cut(s)	1278
AgsI	TTSAA	7 cut(s)	125, 216, 227, 246, 295, 973, 1576
AjnI	CCWGG	2 cut(s)	612, 1345
AleI	CACNNNNGTG	2 cut(s)	590, 625
AluBI	AGCT	6 cut(s)	41, 55, 272, 394, 446, 934
AluI	AGCT	6 cut(s)	41, 55, 272, 394, 446, 934
Alw26I	GTCTC	2 cut(s)	432, 1050
AlwI	GGATC	4 cut(s)	227, 338, 1003, 1325
AlwNI	CAGNNNCTG	1 cut(s)	572
AoxI	GGCC	2 cut(s)	582, 1354
ApeKI	GCWGC	3 cut(s)	269, 572, 835
ApoI	RAATTY	3 cut(s)	290, 398, 1145
AseI	ATTAAT	1 cut(s)	456
AsiGI	ACCGGT	1 cut(s)	1278
Asp700I	GAANNNNTTC	1 cut(s)	1643
AspLEI	GCGC	2 cut(s)	1443, 1547
AspS9I	GGNCC	4 cut(s)	479, 610, 1123, 1355
AsuHPI	GGTGA	4 cut(s)	164, 989, 1261, 1403
AsuII	TTCGAA	1 cut(s)	1560
AvaII	GGWCC	3 cut(s)	479, 610, 1123
AxyI	CCTNAGG	1 cut(s)	1296
BaeGI	GKGCMC	2 cut(s)	501, 622
BalI	TGGCCA	1 cut(s)	584
BanI	GGYRCC	1 cut(s)	1544
BbsI	GAAGAC	1 cut(s)	779
BbvCI	CCTCAGC	1 cut(s)	405
BbvI	GCAGC	3 cut(s)	281, 559, 822
BccI	CCATC	7 cut(s)	541, 550, 745, 1057, 1238, 1478, 1525
BceAI	ACGGC	1 cut(s)	128
BciT130I	CCWGG	2 cut(s)	614, 1347
BciVI	GTATCC	1 cut(s)	245
BclI	TGATCA	1 cut(s)	1525
BcoDI	GTCTC	2 cut(s)	432, 1050
BfaI	CTAG	3 cut(s)	237, 677, 1359
BfmI	CTRYAG	3 cut(s)	256, 468, 573
BfoI	RGCGCY	1 cut(s)	1548
BfuAI	ACCTGC	2 cut(s)	310, 1348
BfuI	GTATCC	1 cut(s)	245
BisI	GCNGC	4 cut(s)	270, 573, 836, 1607
BlsI	GCNGC	4 cut(s)	271, 574, 837, 1608
Bme1390I	CCNGG	2 cut(s)	614, 1347
Bme18I	GGWCC	3 cut(s)	479, 610, 1123
BmgT120I	GGNCC	4 cut(s)	479, 610, 1123, 1355
BmiI	GGNNCC	5 cut(s)	480, 481, 687, 1076, 1546
BmrFI	CCNGG	2 cut(s)	614, 1347
BmrI	ACTGGG	1 cut(s)	477
BmsI	GCATC	3 cut(s)	199, 340, 1618
BmuI	ACTGGG	1 cut(s)	477
BpiI	GAAGAC	1 cut(s)	779
BpmI	CTGGAG	2 cut(s)	203, 1028
Bpu10I	CCTNAGC	1 cut(s)	405
Bpu14I	TTCGAA	1 cut(s)	1560
BsaHI	GRCGYC	2 cut(s)	436, 1545
BsaJI	CCNNGG	3 cut(s)	613, 640, 1345
BsaWI	WCCGGW	1 cut(s)	1278
BsaXI	ACNNNNNCTCC	2 cut(s)	708, 738
Bsc4I	CCNNNNNNNGG	6 cut(s)	181, 646, 682, 1301, 1346, 1352
Bse118I	RCCGGY	1 cut(s)	1278
Bse1I	ACTGG	3 cut(s)	186, 483, 1126
Bse21I	CCTNAGG	1 cut(s)	1296
BseBI	CCWGG	2 cut(s)	614, 1347
BseDI	CCNNGG	3 cut(s)	613, 640, 1345
BseGI	GGATG	2 cut(s)	1465, 1609
BseLI	CCNNNNNNNGG	6 cut(s)	181, 646, 682, 1301, 1346, 1352
BseMII	CTCAG	4 cut(s)	107, 396, 1247, 1287
BseNI	ACTGG	3 cut(s)	186, 483, 1126
BseRI	GAGGAG	1 cut(s)	968
BseSI	GKGCMC	2 cut(s)	501, 622
BseXI	GCAGC	3 cut(s)	281, 559, 822
BsgI	GTGCAG	1 cut(s)	288
Bsh1236I	CGCG	1 cut(s)	37
BshFI	GGCC	2 cut(s)	584, 1356
BshNI	GGYRCC	1 cut(s)	1544
BshTI	ACCGGT	1 cut(s)	1278
BsiSI	CCGG	1 cut(s)	1279
BslFI	GGGAC	3 cut(s)	423, 465, 905
BslI	CCNNNNNNNGG	6 cut(s)	181, 646, 682, 1301, 1346, 1352
BsmAI	GTCTC	2 cut(s)	432, 1050
BsmFI	GGGAC	3 cut(s)	423, 465, 905
BsmI	GAATGC	2 cut(s)	145, 794
BsnI	GGCC	2 cut(s)	584, 1356
Bsp119I	TTCGAA	1 cut(s)	1560
Bsp1286I	GDGCHC	2 cut(s)	501, 622
Bsp1407I	TGTACA	1 cut(s)	108
Bsp143I	GATC	7 cut(s)	103, 232, 343, 913, 995, 1330, 1525
Bsp68I	TCGCGA	1 cut(s)	37
BspACI	CCGC	1 cut(s)	1607
BspANI	GGCC	2 cut(s)	584, 1356
BspCNI	CTCAG	4 cut(s)	106, 397, 1248, 1288
BspFNI	CGCG	1 cut(s)	37
BspHI	TCATGA	1 cut(s)	1447
BspLI	GGNNCC	5 cut(s)	480, 481, 687, 1076, 1546
BspMAI	CTGCAG	1 cut(s)	577
BspMI	ACCTGC	2 cut(s)	310, 1348
BspPI	GGATC	4 cut(s)	227, 338, 1003, 1325
BspT104I	TTCGAA	1 cut(s)	1560
BspT107I	GGYRCC	1 cut(s)	1544
BsrFI	RCCGGY	1 cut(s)	1278
BsrGI	TGTACA	1 cut(s)	108
BsrI	ACTGG	3 cut(s)	186, 483, 1126
BssAI	RCCGGY	1 cut(s)	1278
BssECI	CCNNGG	3 cut(s)	613, 640, 1345
BssMI	GATC	7 cut(s)	103, 232, 343, 913, 995, 1330, 1525
BssNAI	GTATAC	1 cut(s)	148
BssNI	GRCGYC	2 cut(s)	436, 1545
Bst1107I	GTATAC	1 cut(s)	148
Bst2UI	CCWGG	2 cut(s)	614, 1347
Bst4CI	ACNGT	6 cut(s)	514, 883, 1026, 1185, 1501, 1523
Bst6I	CTCTTC	1 cut(s)	1345
BstACI	GRCGYC	2 cut(s)	436, 1545
BstAPI	GCANNNNNTGC	2 cut(s)	572, 835
BstAUI	TGTACA	1 cut(s)	108
BstBI	TTCGAA	1 cut(s)	1560
BstC8I	GCNNGC	2 cut(s)	39, 1364
BstDEI	CTNAG	4 cut(s)	93, 405, 1256, 1296
BstDSI	CCRYGG	1 cut(s)	640
BstENI	CCTNNNNNAGG	2 cut(s)	1299, 1350
BstF5I	GGATG	2 cut(s)	1465, 1609
BstFNI	CGCG	1 cut(s)	37
BstH2I	RGCGCY	1 cut(s)	1548
BstHHI	GCGC	2 cut(s)	1443, 1547
BstKTI	GATC	7 cut(s)	106, 235, 346, 916, 998, 1333, 1528
BstMAI	GTCTC	2 cut(s)	432, 1050
BstMBI	GATC	7 cut(s)	103, 232, 343, 913, 995, 1330, 1525
BstMWI	GCNNNNNNNGC	9 cut(s)	68, 77, 218, 278, 524, 572, 581, 835, 940
BstNI	CCWGG	2 cut(s)	614, 1347
BstNSI	RCATGY	1 cut(s)	1045
BstSCI	CCNGG	2 cut(s)	612, 1345
BstSFI	CTRYAG	3 cut(s)	256, 468, 573
BstSLI	GKGCMC	2 cut(s)	501, 622
BstUI	CGCG	1 cut(s)	37
BstV1I	GCAGC	3 cut(s)	281, 559, 822
BstV2I	GAAGAC	1 cut(s)	779
BstXI	CCANNNNNNTGG	1 cut(s)	592
BstZ17I	GTATAC	1 cut(s)	148
Bsu36I	CCTNAGG	1 cut(s)	1296
BsuI	GTATCC	1 cut(s)	245
BsuRI	GGCC	2 cut(s)	584, 1356
BtgI	CCRYGG	1 cut(s)	640
BtgZI	GCGATG	1 cut(s)	560
BtsCI	GGATG	2 cut(s)	1465, 1609
BtsI	GCAGTG	3 cut(s)	390, 573, 1608
BtsIMutI	CAGTG	6 cut(s)	390, 501, 573, 1022, 1497, 1608
BtuMI	TCGCGA	1 cut(s)	37
BveI	ACCTGC	2 cut(s)	310, 1348
Cac8I	GCNNGC	2 cut(s)	39, 1364
CaiI	CAGNNNCTG	1 cut(s)	572
CciI	TCATGA	1 cut(s)	1447
CfoI	GCGC	2 cut(s)	1443, 1547
Cfr10I	RCCGGY	1 cut(s)	1278
Cfr13I	GGNCC	4 cut(s)	479, 610, 1123, 1355
CseI	GACGC	1 cut(s)	425
Csp6I	GTAC	3 cut(s)	109, 419, 896
CspAI	ACCGGT	1 cut(s)	1278
CspCI	CAANNNNNGTGG	2 cut(s)	576, 611
CviAII	CATG	9 cut(s)	604, 899, 1042, 1079, 1093, 1193, 1223, 1448, 1481
CviQI	GTAC	3 cut(s)	109, 419, 896
DdeI	CTNAG	4 cut(s)	93, 405, 1256, 1296
DinI	GGCGCC	1 cut(s)	1546
DpnI	GATC	7 cut(s)	105, 234, 345, 915, 997, 1332, 1527
DpnII	GATC	7 cut(s)	103, 232, 343, 913, 995, 1330, 1525
DraI	TTTAAA	1 cut(s)	76
EaeI	YGGCCR	1 cut(s)	582
Eam1104I	CTCTTC	1 cut(s)	1345
EarI	CTCTTC	1 cut(s)	1345
Eco47I	GGWCC	3 cut(s)	479, 610, 1123
Eco57I	CTGAAG	4 cut(s)	63, 386, 933, 1185
Eco81I	CCTNAGG	1 cut(s)	1296
EcoNI	CCTNNNNNAGG	2 cut(s)	1299, 1350
EcoO109I	RGGNCCY	2 cut(s)	479, 1355
EcoRII	CCWGG	2 cut(s)	612, 1345
EcoT22I	ATGCAT	1 cut(s)	796
EgeI	GGCGCC	1 cut(s)	1546
EheI	GGCGCC	1 cut(s)	1546
FaeI	CATG	9 cut(s)	607, 902, 1045, 1082, 1096, 1196, 1226, 1451, 1484
FaqI	GGGAC	3 cut(s)	423, 465, 905
FatI	CATG	9 cut(s)	603, 898, 1041, 1078, 1092, 1192, 1222, 1447, 1480
FauNDI	CATATG	1 cut(s)	1633
FbaI	TGATCA	1 cut(s)	1525
FblI	GTMKAC	1 cut(s)	147
Fnu4HI	GCNGC	4 cut(s)	270, 573, 836, 1607
FokI	GGATG	2 cut(s)	1472, 1596
Fsp4HI	GCNGC	4 cut(s)	270, 573, 836, 1607
FspBI	CTAG	3 cut(s)	237, 677, 1359
GlaI	GCGC	2 cut(s)	1442, 1546
GluI	GCNGC	4 cut(s)	270, 573, 836, 1607
GsuI	CTGGAG	2 cut(s)	203, 1028
HaeII	RGCGCY	1 cut(s)	1548
HaeIII	GGCC	2 cut(s)	584, 1356
HapII	CCGG	1 cut(s)	1279
HgaI	GACGC	1 cut(s)	425
HhaI	GCGC	2 cut(s)	1443, 1547
Hin1I	GRCGYC	2 cut(s)	436, 1545
Hin1II	CATG	9 cut(s)	607, 902, 1045, 1082, 1096, 1196, 1226, 1451, 1484
Hin6I	GCGC	2 cut(s)	1441, 1545
HinP1I	GCGC	2 cut(s)	1441, 1545
HindIII	AAGCTT	2 cut(s)	53, 392
HinfI	GANTC	6 cut(s)	157, 425, 449, 766, 958, 1653
HpaII	CCGG	1 cut(s)	1279
HphI	GGTGA	4 cut(s)	164, 989, 1261, 1403
Hpy166II	GTNNAC	6 cut(s)	111, 148, 988, 1181, 1289, 1490
Hpy188I	TCNGA	4 cut(s)	771, 952, 1530, 1652
Hpy188III	TCNNGA	5 cut(s)	36, 347, 1295, 1448, 1613
Hpy8I	GTNNAC	6 cut(s)	111, 148, 988, 1181, 1289, 1490
HpyAV	CCTTC	6 cut(s)	361, 373, 707, 849, 957, 1295
HpyCH4III	ACNGT	6 cut(s)	514, 883, 1026, 1185, 1501, 1523
HpyCH4IV	ACGT	2 cut(s)	622, 894
HpyF10VI	GCNNNNNNNGC	9 cut(s)	68, 77, 218, 278, 524, 572, 581, 835, 940
HpyF3I	CTNAG	4 cut(s)	93, 405, 1256, 1296
HpySE526I	ACGT	2 cut(s)	622, 894
Hsp92I	GRCGYC	2 cut(s)	436, 1545
Hsp92II	CATG	9 cut(s)	607, 902, 1045, 1082, 1096, 1196, 1226, 1451, 1484
HspAI	GCGC	2 cut(s)	1441, 1545
KasI	GGCGCC	1 cut(s)	1544
KflI	GGGWCCC	1 cut(s)	479
Ksp22I	TGATCA	1 cut(s)	1525
Kzo9I	GATC	7 cut(s)	103, 232, 343, 913, 995, 1330, 1525
LmnI	GCTCC	2 cut(s)	685, 1516
Lsp1109I	GCAGC	3 cut(s)	281, 559, 822
LweI	GCATC	3 cut(s)	199, 340, 1618
MaeI	CTAG	3 cut(s)	237, 677, 1359
MaeII	ACGT	2 cut(s)	622, 894
MaeIII	GTNAC	6 cut(s)	508, 724, 807, 1396, 1535, 1588
MalI	GATC	7 cut(s)	105, 234, 345, 915, 997, 1332, 1527
MboI	GATC	7 cut(s)	103, 232, 343, 913, 995, 1330, 1525
MboII	GAAGA	4 cut(s)	56, 754, 784, 1362
MhlI	GDGCHC	2 cut(s)	501, 622
MlsI	TGGCCA	1 cut(s)	584
MluNI	TGGCCA	1 cut(s)	584
Mly113I	GGCGCC	1 cut(s)	1545
MlyI	GAGTC	2 cut(s)	434, 1647
Mox20I	TGGCCA	1 cut(s)	584
Mph1103I	ATGCAT	1 cut(s)	796
MroXI	GAANNNNTTC	1 cut(s)	1643
MscI	TGGCCA	1 cut(s)	584
MslI	CAYNNNNRTG	4 cut(s)	590, 625, 1036, 1614
Msp20I	TGGCCA	1 cut(s)	584
MspI	CCGG	1 cut(s)	1279
MspR9I	CCNGG	2 cut(s)	614, 1347
Mva1269I	GAATGC	2 cut(s)	145, 794
MvaI	CCWGG	2 cut(s)	614, 1347
MvnI	CGCG	1 cut(s)	37
MwoI	GCNNNNNNNGC	9 cut(s)	68, 77, 218, 278, 524, 572, 581, 835, 940
NarI	GGCGCC	1 cut(s)	1545
NdeI	CATATG	1 cut(s)	1633
NdeII	GATC	7 cut(s)	103, 232, 343, 913, 995, 1330, 1525
NlaIII	CATG	9 cut(s)	607, 902, 1045, 1082, 1096, 1196, 1226, 1451, 1484
NlaIV	GGNNCC	5 cut(s)	480, 481, 687, 1076, 1546
NmuCI	GTSAC	2 cut(s)	1396, 1588
NruI	TCGCGA	1 cut(s)	37
NsiI	ATGCAT	1 cut(s)	796
NspI	RCATGY	1 cut(s)	1045
NspV	TTCGAA	1 cut(s)	1560
OliI	CACNNNNGTG	2 cut(s)	590, 625
PagI	TCATGA	1 cut(s)	1447
PcsI	WCGNNNNNNNCGW	1 cut(s)	628
PctI	GAATGC	2 cut(s)	145, 794
PdmI	GAANNNNTTC	1 cut(s)	1643
PfeI	GAWTC	4 cut(s)	157, 449, 766, 958
PinAI	ACCGGT	1 cut(s)	1278
PkrI	GCNGC	4 cut(s)	271, 574, 837, 1608
PleI	GAGTC	2 cut(s)	433, 1647
PluTI	GGCGCC	1 cut(s)	1548
PpsI	GAGTC	2 cut(s)	433, 1647
PpuMI	RGGWCCY	1 cut(s)	479
PshBI	ATTAAT	1 cut(s)	456
Psp5II	RGGWCCY	1 cut(s)	479
Psp6I	CCWGG	2 cut(s)	612, 1345
PspGI	CCWGG	2 cut(s)	612, 1345
PspN4I	GGNNCC	5 cut(s)	480, 481, 687, 1076, 1546
PspPI	GGNCC	4 cut(s)	479, 610, 1123, 1355
PspPPI	RGGWCCY	1 cut(s)	479
PstI	CTGCAG	1 cut(s)	577
PstNI	CAGNNNCTG	1 cut(s)	572
RruI	TCGCGA	1 cut(s)	37
RsaI	GTAC	3 cut(s)	110, 420, 897
RsaNI	GTAC	3 cut(s)	109, 419, 896
RseI	CAYNNNNRTG	4 cut(s)	590, 625, 1036, 1614
SatI	GCNGC	4 cut(s)	270, 573, 836, 1607
Sau3AI	GATC	7 cut(s)	103, 232, 343, 913, 995, 1330, 1525
Sau96I	GGNCC	4 cut(s)	479, 610, 1123, 1355
SchI	GAGTC	2 cut(s)	434, 1647
ScrFI	CCNGG	2 cut(s)	614, 1347
SduI	GDGCHC	2 cut(s)	501, 622
SfaNI	GCATC	3 cut(s)	199, 340, 1618
SfcI	CTRYAG	3 cut(s)	256, 468, 573
SfoI	GGCGCC	1 cut(s)	1546
SfuI	TTCGAA	1 cut(s)	1560
SinI	GGWCC	3 cut(s)	479, 610, 1123
SmiMI	CAYNNNNRTG	4 cut(s)	590, 625, 1036, 1614
SsiI	CCGC	1 cut(s)	1607
SspDI	GGCGCC	1 cut(s)	1544
SspI	AATATT	3 cut(s)	89, 695, 925
SspMI	CTAG	3 cut(s)	237, 677, 1359
StyD4I	CCNGG	2 cut(s)	612, 1345
TaaI	ACNGT	6 cut(s)	514, 883, 1026, 1185, 1501, 1523
TaiI	ACGT	2 cut(s)	625, 897
TaqI	TCGA	2 cut(s)	1242, 1560
TatI	WGTACW	1 cut(s)	108
TauI	GCSGC	1 cut(s)	1609
TfiI	GAWTC	4 cut(s)	157, 449, 766, 958
TscAI	CASTG	6 cut(s)	390, 501, 573, 1029, 1504, 1608
TseFI	GTSAC	2 cut(s)	1396, 1588
TseI	GCWGC	3 cut(s)	269, 572, 835
Tsp45I	GTSAC	2 cut(s)	1396, 1588
TspDTI	ATGAA	7 cut(s)	81, 404, 477, 1095, 1109, 1211, 1464
TspGWI	ACGGA	2 cut(s)	629, 1544
TspRI	CASTG	6 cut(s)	390, 501, 573, 1029, 1504, 1608
VpaK11BI	GGWCC	3 cut(s)	479, 610, 1123
VspI	ATTAAT	1 cut(s)	456
XagI	CCTNNNNNAGG	2 cut(s)	1299, 1350
XapI	RAATTY	3 cut(s)	290, 398, 1145
XceI	RCATGY	1 cut(s)	1045
XcmI	CCANNNNNNNNNTGG	1 cut(s)	592
XmiI	GTMKAC	1 cut(s)	147
XmnI	GAANNNNTTC	1 cut(s)	1643
XspI	CTAG	3 cut(s)	237, 677, 1359
Zsp2I	ATGCAT	1 cut(s)	796

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.