Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0000899

Physical Location & Seq

Genomic Coordinates Reverse (-)

51820460 .. 51821959

Gene Structure 1500 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029943

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGTTCTCCAAATCAATCCCTCTGTCTTTCTTGCTCTTTTGTCTTTTGCACCATGCAGCCTCTGGTGCTTCCCCACTTTATCATATCTGTTTCAGCAAGGCAGACTACACTGGCACTAGTCCATACCATGCTAACTTGGACACGATGCTCAATCATTTATCCACCAAAGTCCCTCCAACTGGATTCGGGGTTGCTTCAACTGGACAAGGTTCGAACAAAGTAAACGGACTAGCGCTATGCCGAGGCGATGTCTCAAGCCCAAAGTGTAAGACTTGTATCATTGAAGCAAGCAAAGAGCTTCGTGCACGCTGCCCTCATAAAAAAGGAGCCATAATATGGTACGACCATTGCATGCTGAAATACTCAAATGGCAACTTCTTTGGGCAAATTGATACCACAAACAAGTTCTATATGTGGAACACGGAGACCGTAAGCAATCCCAGACCATTCAATAAGAATGTTAAGAAATTGTTGACTGGGTTGTCTAATAAAGCCTCTTCTAACCGAAAGCTTTATAGTACTGGTGAGCTACAGCTCGATAAATGGAAAAAATTGTATGGTTTAGTTCAGTGCACGAGGGACCTATCTCGCCTGGAATGTAAGAAGTGTCTTGATGTTGCAATAAGTGAACTGCCGAAAGGTTCTGATGCGAAACGAGGCGGGCGCGTAGCAACTGGGAGTTGTAACTTTCGATATGAACTCTCCCGCTTTAAGGGTGAGAATTTTGCGCAGCATAGCGTGAAAAGCAATGCTAACACACCCGACTTGAGTATAGTGGACAATGAAATTCCAAACTCACCTTTCCCAAACAGCCGTCTCAAAAATGGCCAAAAGCAAATCACCACCCACAAACTGCACACTATCTCCCCAACTCTTGTCGTCCCTTGTAGGGCTGATAGTGATTTCACTGCCAACAATCTCATAGCCAACGTTGTTAAGTGCACAAACAAGAGGGTCGTAGGTGGTACAAACATTGGAGACTCGTCGAAAGTGAACTTGCCAGCATTAGCATCCTTGGCATTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0030312 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071944 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1204 Stress-antifung

Protein Analysis

342

Amino Acids

37.4

Weight (kDa)

9.56

Isoelectric Point (pI)

35.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stress-antifung	PF01657	30 - 123	3.9e-24	Salt stress response/antifungal
Stress-antifung	PF01657	143 - 234	3.8e-13	Salt stress response/antifungal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000899)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22060
fragaria_vesca	FvH4_2g10161
malus_domestica	MD05G1056000.v1.1 MD05G1056300.v1.1 MD10G1064400.v1.1
prunus_persica	Prupe.3G109800_v2.0.a1 Prupe.3G110100_v2.0.a1 Prupe.3G110200_v2.0.a1 Prupe.3G110300_v2.0.a1 Prupe.8G086600_v2.0.a1
pyrus_communis	pycom05g04770 pycom05g04780
rosa_chinensis	RchiOBHm_Chr1g0328011 RchiOBHm_Chr1g0328031 RchiOBHm_Chr2g0158681 RchiOBHm_Chr2g0160231 RchiOBHm_Chr2g0160251
rosa_laevigata	RLG00000014015 RLG00000021106 RLG00000021206 RLG00000021207 RLG00000029943 RLG00000029944 RLG00000029946 RLG00000029948
rosa_multiflora	Rmu_co8269469.1_g000001 Rmu_co8408147.1_g000001 Rmu_sc0000403.1_g000003 Rmu_sc0008269.1_g000008 Rmu_sc0020806.1_g000002
rosa_roxburghii	Rroxscaffold_2G00091070 Rroxscaffold_2G00091110 Rroxscaffold_4G00321960 Rroxscaffold_4G00321970 Rroxscaffold_4G00321980 Rroxscaffold_4G00322000 Rroxscaffold_4G00322030 Rroxscaffold_7G00200860 Rroxscaffold_7G00200940
rosa_rugosa	Rorug01G0073200 Rorug01G0073200 Rorug01G0073300 Rorug02G0471400 Rorug02G0472000 Rorug02G0482400 Rorug02G0482400
rosa_samantha	Rh1BG071900 Rh1BG072100 Rh2AG537200 Rh2AG547800 Rh2BG550400 Rh2BG561200 Rh2BG561400 Rh2CG520900 Rh2CG531800 Rh2CG532100 Rh6AG153200 Rh6CG149000
rosa_wichuraiana	Rw0G019500 Rw1G006970 Rw1G006980 Rw1G006990 Rw2G044480 Rw2G045320 Rw6G013180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	481
Acc16I	TGCGCA	1 cut(s)	729
AccB7I	CCANNNNNTGG	1 cut(s)	336
AccII	CGCG	1 cut(s)	666
AciI	CCGC	2 cut(s)	660, 706
AclI	AACGTT	1 cut(s)	930
AcoI	YGGCCR	1 cut(s)	826
AcsI	RAATTY	2 cut(s)	721, 786
AfaI	GTAC	3 cut(s)	341, 520, 967
AfeI	AGCGCT	1 cut(s)	234
AfiI	CCNNNNNNNGG	4 cut(s)	179, 336, 712, 889
AgsI	TTSAA	3 cut(s)	198, 284, 451
AhlI	ACTAGT	1 cut(s)	116
AjnI	CCWGG	1 cut(s)	591
AluBI	AGCT	4 cut(s)	298, 511, 529, 535
AluI	AGCT	4 cut(s)	298, 511, 529, 535
Alw21I	GWGCWC	3 cut(s)	307, 575, 944
Alw26I	GTCTC	4 cut(s)	256, 419, 821, 972
Alw44I	GTGCAC	3 cut(s)	303, 571, 940
AlwNI	CAGNNNCTG	1 cut(s)	62
Aor51HI	AGCGCT	1 cut(s)	234
AoxI	GGCC	1 cut(s)	826
ApaLI	GTGCAC	3 cut(s)	303, 571, 940
ApeKI	GCWGC	3 cut(s)	56, 309, 730
ApoI	RAATTY	2 cut(s)	721, 786
AspLEI	GCGC	3 cut(s)	235, 666, 730
AspS9I	GGNCC	1 cut(s)	580
AsuHPI	GGTGA	4 cut(s)	536, 728, 789, 832
AsuII	TTCGAA	1 cut(s)	212
AvaII	GGWCC	1 cut(s)	580
BaeGI	GKGCMC	3 cut(s)	307, 575, 944
BalI	TGGCCA	1 cut(s)	828
BauI	CACGAG	1 cut(s)	574
Bbv12I	GWGCWC	3 cut(s)	307, 575, 944
BbvI	GCAGC	3 cut(s)	68, 296, 742
BceAI	ACGGC	1 cut(s)	798
BciT130I	CCWGG	1 cut(s)	593
BcoDI	GTCTC	4 cut(s)	256, 419, 821, 972
BcuI	ACTAGT	1 cut(s)	116
BfaI	CTAG	2 cut(s)	117, 230
BfmI	CTRYAG	1 cut(s)	530
BfoI	RGCGCY	1 cut(s)	236
BisI	GCNGC	3 cut(s)	57, 310, 731
BlsI	GCNGC	3 cut(s)	58, 311, 732
BmcAI	AGTACT	1 cut(s)	520
Bme1390I	CCNGG	1 cut(s)	593
Bme18I	GGWCC	1 cut(s)	580
BmgT120I	GGNCC	1 cut(s)	580
BmiI	GGNNCC	2 cut(s)	328, 581
BmrFI	CCNGG	1 cut(s)	593
BmrI	ACTGGG	2 cut(s)	486, 684
BmsI	GCATC	3 cut(s)	135, 637, 1019
BmuI	ACTGGG	2 cut(s)	486, 684
Bpu14I	TTCGAA	1 cut(s)	212
BpuEI	CTTGAG	2 cut(s)	238, 787
BsaI	GGTCTC	1 cut(s)	419
BsaJI	CCNNGG	2 cut(s)	241, 1014
BsaXI	ACNNNNNCTCC	2 cut(s)	848, 878
Bsc4I	CCNNNNNNNGG	4 cut(s)	179, 336, 712, 889
Bse1I	ACTGG	6 cut(s)	115, 184, 205, 481, 526, 679
Bse3DI	GCAATG	2 cut(s)	346, 754
BseBI	CCWGG	1 cut(s)	593
BseDI	CCNNGG	2 cut(s)	241, 1014
BseGI	GGATG	1 cut(s)	1010
BseLI	CCNNNNNNNGG	4 cut(s)	179, 336, 712, 889
BseMI	GCAATG	2 cut(s)	346, 754
BseNI	ACTGG	6 cut(s)	115, 184, 205, 481, 526, 679
BseSI	GKGCMC	3 cut(s)	307, 575, 944
BseXI	GCAGC	3 cut(s)	68, 296, 742
BsgI	GTGCAG	1 cut(s)	839
Bsh1236I	CGCG	1 cut(s)	666
BshFI	GGCC	1 cut(s)	828
BsiHKAI	GWGCWC	3 cut(s)	307, 575, 944
BslFI	GGGAC	3 cut(s)	155, 593, 866
BslI	CCNNNNNNNGG	4 cut(s)	179, 336, 712, 889
BsmAI	GTCTC	4 cut(s)	256, 419, 821, 972
BsmBI	CGTCTC	1 cut(s)	821
BsmFI	GGGAC	3 cut(s)	155, 593, 866
BsnI	GGCC	1 cut(s)	828
Bso31I	GGTCTC	1 cut(s)	419
Bsp119I	TTCGAA	1 cut(s)	212
Bsp1286I	GDGCHC	3 cut(s)	307, 575, 944
BspACI	CCGC	2 cut(s)	660, 706
BspANI	GGCC	1 cut(s)	828
BspFNI	CGCG	1 cut(s)	666
BspLI	GGNNCC	2 cut(s)	328, 581
BspT104I	TTCGAA	1 cut(s)	212
BspTNI	GGTCTC	1 cut(s)	419
BsrDI	GCAATG	2 cut(s)	346, 754
BsrI	ACTGG	6 cut(s)	115, 184, 205, 481, 526, 679
BssECI	CCNNGG	2 cut(s)	241, 1014
BssSI	CACGAG	1 cut(s)	574
BssT1I	CCWWGG	1 cut(s)	1014
Bst2BI	CACGAG	1 cut(s)	574
Bst2UI	CCWGG	1 cut(s)	593
Bst4CI	ACNGT	1 cut(s)	430
Bst6I	CTCTTC	1 cut(s)	502
BstBI	TTCGAA	1 cut(s)	212
BstC8I	GCNNGC	5 cut(s)	289, 307, 353, 662, 1002
BstF5I	GGATG	1 cut(s)	1010
BstFNI	CGCG	1 cut(s)	666
BstH2I	RGCGCY	1 cut(s)	236
BstHHI	GCGC	3 cut(s)	235, 666, 730
BstMAI	GTCTC	4 cut(s)	256, 419, 821, 972
BstMWI	GCNNNNNNNGC	3 cut(s)	65, 744, 1016
BstNI	CCWGG	1 cut(s)	593
BstNSI	RCATGY	1 cut(s)	355
BstSCI	CCNGG	1 cut(s)	591
BstSFI	CTRYAG	1 cut(s)	530
BstSLI	GKGCMC	3 cut(s)	307, 575, 944
BstUI	CGCG	1 cut(s)	666
BstV1I	GCAGC	3 cut(s)	68, 296, 742
BsuRI	GGCC	1 cut(s)	828
BtgZI	GCGATG	1 cut(s)	261
BtsCI	GGATG	1 cut(s)	1010
BtsI	GCAGTG	1 cut(s)	906
BtsIMutI	CAGTG	3 cut(s)	108, 575, 906
Cac8I	GCNNGC	5 cut(s)	289, 307, 353, 662, 1002
CaiI	CAGNNNCTG	1 cut(s)	62
CfoI	GCGC	3 cut(s)	235, 666, 730
Cfr13I	GGNCC	1 cut(s)	580
Csp6I	GTAC	3 cut(s)	340, 519, 966
CviAII	CATG	3 cut(s)	53, 128, 352
CviQI	GTAC	3 cut(s)	340, 519, 966
DrdI	GACNNNNNNGTC	1 cut(s)	481
DseDI	GACNNNNNNGTC	1 cut(s)	481
EaeI	YGGCCR	1 cut(s)	826
Eam1104I	CTCTTC	1 cut(s)	502
EarI	CTCTTC	1 cut(s)	502
Eco130I	CCWWGG	1 cut(s)	1014
Eco31I	GGTCTC	1 cut(s)	419
Eco47I	GGWCC	1 cut(s)	580
Eco47III	AGCGCT	1 cut(s)	234
EcoO109I	RGGNCCY	1 cut(s)	580
EcoRII	CCWGG	1 cut(s)	591
EcoT14I	CCWWGG	1 cut(s)	1014
ErhI	CCWWGG	1 cut(s)	1014
Esp3I	CGTCTC	1 cut(s)	821
FaeI	CATG	3 cut(s)	56, 131, 355
FaqI	GGGAC	3 cut(s)	155, 593, 866
FatI	CATG	3 cut(s)	52, 127, 351
FauI	CCCGC	2 cut(s)	653, 713
Fnu4HI	GCNGC	3 cut(s)	57, 310, 731
FokI	GGATG	1 cut(s)	997
Fsp4HI	GCNGC	3 cut(s)	57, 310, 731
FspBI	CTAG	2 cut(s)	117, 230
FspI	TGCGCA	1 cut(s)	729
GlaI	GCGC	3 cut(s)	234, 665, 729
GluI	GCNGC	3 cut(s)	57, 310, 731
HaeII	RGCGCY	1 cut(s)	236
HaeIII	GGCC	1 cut(s)	828
HhaI	GCGC	3 cut(s)	235, 666, 730
Hin1II	CATG	3 cut(s)	56, 131, 355
Hin6I	GCGC	3 cut(s)	233, 664, 728
HinP1I	GCGC	3 cut(s)	233, 664, 728
HincII	GTYRAC	1 cut(s)	474
HindII	GTYRAC	1 cut(s)	474
HindIII	AAGCTT	1 cut(s)	509
HinfI	GANTC	2 cut(s)	183, 980
HphI	GGTGA	4 cut(s)	536, 728, 789, 832
Hpy166II	GTNNAC	8 cut(s)	223, 305, 474, 573, 629, 778, 942, 994
Hpy188I	TCNGA	1 cut(s)	646
Hpy188III	TCNNGA	1 cut(s)	611
Hpy8I	GTNNAC	8 cut(s)	223, 305, 474, 573, 629, 778, 942, 994
Hpy99I	CGWCG	1 cut(s)	988
HpyCH4III	ACNGT	1 cut(s)	430
HpyCH4IV	ACGT	1 cut(s)	930
HpyCH4V	TGCA	8 cut(s)	49, 56, 305, 351, 573, 620, 856, 942
HpyF10VI	GCNNNNNNNGC	3 cut(s)	65, 744, 1016
HpySE526I	ACGT	1 cut(s)	930
Hsp92II	CATG	3 cut(s)	56, 131, 355
HspAI	GCGC	3 cut(s)	233, 664, 728
LmnI	GCTCC	1 cut(s)	326
Lsp1109I	GCAGC	3 cut(s)	68, 296, 742
LweI	GCATC	3 cut(s)	135, 637, 1019
MaeI	CTAG	2 cut(s)	117, 230
MaeII	ACGT	1 cut(s)	930
MaeIII	GTNAC	1 cut(s)	683
MboII	GAAGA	1 cut(s)	489
MhlI	GDGCHC	3 cut(s)	307, 575, 944
MlsI	TGGCCA	1 cut(s)	828
MluCI	AATT	5 cut(s)	387, 467, 551, 721, 786
MluNI	TGGCCA	1 cut(s)	828
MlyI	GAGTC	1 cut(s)	974
MmeI	TCCRAC	1 cut(s)	200
MnlI	CCTC	9 cut(s)	30, 70, 183, 236, 324, 505, 570, 650, 945
Mox20I	TGGCCA	1 cut(s)	828
MscI	TGGCCA	1 cut(s)	828
MseI	TTAA	3 cut(s)	462, 711, 936
Msp20I	TGGCCA	1 cut(s)	828
MspR9I	CCNGG	1 cut(s)	593
MvaI	CCWGG	1 cut(s)	593
MvnI	CGCG	1 cut(s)	666
MwoI	GCNNNNNNNGC	3 cut(s)	65, 744, 1016
NlaIII	CATG	3 cut(s)	56, 131, 355
NlaIV	GGNNCC	2 cut(s)	328, 581
NmeAIII	GCCGAG	1 cut(s)	266
NsbI	TGCGCA	1 cut(s)	729
NspI	RCATGY	1 cut(s)	355
NspV	TTCGAA	1 cut(s)	212
PaeI	GCATGC	1 cut(s)	355
PfeI	GAWTC	1 cut(s)	183
PflMI	CCANNNNNTGG	1 cut(s)	336
PkrI	GCNGC	3 cut(s)	58, 311, 732
PleI	GAGTC	1 cut(s)	974
PpsI	GAGTC	1 cut(s)	974
PpuMI	RGGWCCY	1 cut(s)	580
Psp1406I	AACGTT	1 cut(s)	930
Psp5II	RGGWCCY	1 cut(s)	580
Psp6I	CCWGG	1 cut(s)	591
PspGI	CCWGG	1 cut(s)	591
PspN4I	GGNNCC	2 cut(s)	328, 581
PspPI	GGNCC	1 cut(s)	580
PspPPI	RGGWCCY	1 cut(s)	580
PstNI	CAGNNNCTG	1 cut(s)	62
RsaI	GTAC	3 cut(s)	341, 520, 967
RsaNI	GTAC	3 cut(s)	340, 519, 966
SaqAI	TTAA	3 cut(s)	462, 711, 936
SatI	GCNGC	3 cut(s)	57, 310, 731
Sau96I	GGNCC	1 cut(s)	580
ScaI	AGTACT	1 cut(s)	520
SchI	GAGTC	1 cut(s)	974
ScrFI	CCNGG	1 cut(s)	593
SduI	GDGCHC	3 cut(s)	307, 575, 944
SfaNI	GCATC	3 cut(s)	135, 637, 1019
SfcI	CTRYAG	1 cut(s)	530
SfuI	TTCGAA	1 cut(s)	212
SinI	GGWCC	1 cut(s)	580
SmlI	CTYRAG	2 cut(s)	253, 766
SmoI	CTYRAG	2 cut(s)	253, 766
SpeI	ACTAGT	1 cut(s)	116
SphI	GCATGC	1 cut(s)	355
Sse9I	AATT	5 cut(s)	387, 467, 551, 721, 786
SsiI	CCGC	2 cut(s)	660, 706
SspMI	CTAG	2 cut(s)	117, 230
StyD4I	CCNGG	1 cut(s)	591
StyI	CCWWGG	1 cut(s)	1014
TaaI	ACNGT	1 cut(s)	430
TaiI	ACGT	1 cut(s)	933
TaqI	TCGA	4 cut(s)	212, 537, 691, 986
TasI	AATT	5 cut(s)	387, 467, 551, 721, 786
TatI	WGTACW	1 cut(s)	518
TfiI	GAWTC	1 cut(s)	183
Tru1I	TTAA	3 cut(s)	462, 711, 936
Tru9I	TTAA	3 cut(s)	462, 711, 936
TscAI	CASTG	3 cut(s)	115, 575, 913
TseI	GCWGC	3 cut(s)	56, 309, 730
TspDTI	ATGAA	2 cut(s)	711, 798
TspGWI	ACGGA	2 cut(s)	240, 437
TspRI	CASTG	3 cut(s)	115, 575, 913
Van91I	CCANNNNNTGG	1 cut(s)	336
VneI	GTGCAC	3 cut(s)	303, 571, 940
VpaK11BI	GGWCC	1 cut(s)	580
XapI	RAATTY	2 cut(s)	721, 786
XceI	RCATGY	1 cut(s)	355
XcmI	CCANNNNNNNNNTGG	1 cut(s)	59
XspI	CTAG	2 cut(s)	117, 230
ZrmI	AGTACT	1 cut(s)	520

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.