Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0000899

Physical Location & Seq

Genomic Coordinates Reverse (-)

51921959 .. 51922535

Gene Structure 577 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029946

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGCTCAATCATTTATCCAACAAAGTCCCTCCGACTGGATTCGGGGTTGCTTCAACTAGTCAAGGTCCGAACAAAGTAAACGGACTAGCGCTATGCCGAGGCGATGTCTCAAGCCCAAAGTGTAAGACTTGTATCATTGAAGCAAGCAAAAAGCTTCGTGCACGCTGCCGTCATAAAAAAGGAGCCATAATATGTACTGTTGAGCTACAGCTCGATAAATGGAAAAAATTGCATGGTTTAGTTCAGTGCACGAGGGACCTATCTCGCCTGGAATGTAAGAAGTGTCTTGATGTTGCAATAAGTGAACTGCCGAAAGTTTCTGATGCGAAACGAGGCGGGCGCGTAGCAAGTGGGAGTTGTAACTTTCGATATGAACTCTCCCGCTTTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0030312 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071944 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1204 Stress-antifung

Protein Analysis

131

Amino Acids

14.26

Weight (kDa)

9.8

Isoelectric Point (pI)

43.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stress-antifung	PF01657	2 - 66	5.9e-12	Salt stress response/antifungal
Stress-antifung	PF01657	75 - 126	4.8e-08	Salt stress response/antifungal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000899)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22060
fragaria_vesca	FvH4_2g10161
malus_domestica	MD05G1056000.v1.1 MD05G1056300.v1.1 MD10G1064400.v1.1
prunus_persica	Prupe.3G109800_v2.0.a1 Prupe.3G110100_v2.0.a1 Prupe.3G110200_v2.0.a1 Prupe.3G110300_v2.0.a1 Prupe.8G086600_v2.0.a1
pyrus_communis	pycom05g04770 pycom05g04780
rosa_chinensis	RchiOBHm_Chr1g0328011 RchiOBHm_Chr1g0328031 RchiOBHm_Chr2g0158681 RchiOBHm_Chr2g0160231 RchiOBHm_Chr2g0160251
rosa_laevigata	RLG00000014015 RLG00000021106 RLG00000021206 RLG00000021207 RLG00000029943 RLG00000029944 RLG00000029946 RLG00000029948
rosa_multiflora	Rmu_co8269469.1_g000001 Rmu_co8408147.1_g000001 Rmu_sc0000403.1_g000003 Rmu_sc0008269.1_g000008 Rmu_sc0020806.1_g000002
rosa_roxburghii	Rroxscaffold_2G00091070 Rroxscaffold_2G00091110 Rroxscaffold_4G00321960 Rroxscaffold_4G00321970 Rroxscaffold_4G00321980 Rroxscaffold_4G00322000 Rroxscaffold_4G00322030 Rroxscaffold_7G00200860 Rroxscaffold_7G00200940
rosa_rugosa	Rorug01G0073200 Rorug01G0073200 Rorug01G0073300 Rorug02G0471400 Rorug02G0472000 Rorug02G0482400 Rorug02G0482400
rosa_samantha	Rh1BG071900 Rh1BG072100 Rh2AG537200 Rh2AG547800 Rh2BG550400 Rh2BG561200 Rh2BG561400 Rh2CG520900 Rh2CG531800 Rh2CG532100 Rh6AG153200 Rh6CG149000
rosa_wichuraiana	Rw0G019500 Rw1G006970 Rw1G006980 Rw1G006990 Rw2G044480 Rw2G045320 Rw6G013180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	342
AciI	CCGC	2 cut(s)	336, 382
AfaI	GTAC	1 cut(s)	196
AfeI	AGCGCT	1 cut(s)	90
AfiI	CCNNNNNNNGG	1 cut(s)	35
AgsI	TTSAA	2 cut(s)	54, 140
AhlI	ACTAGT	1 cut(s)	56
AjnI	CCWGG	1 cut(s)	267
AluBI	AGCT	3 cut(s)	154, 205, 211
AluI	AGCT	3 cut(s)	154, 205, 211
Alw21I	GWGCWC	2 cut(s)	163, 251
Alw26I	GTCTC	1 cut(s)	112
Alw44I	GTGCAC	2 cut(s)	159, 247
Aor51HI	AGCGCT	1 cut(s)	90
ApaLI	GTGCAC	2 cut(s)	159, 247
ApeKI	GCWGC	1 cut(s)	165
AspLEI	GCGC	2 cut(s)	91, 342
AspS9I	GGNCC	2 cut(s)	65, 256
AvaII	GGWCC	2 cut(s)	65, 256
BaeGI	GKGCMC	2 cut(s)	163, 251
BauI	CACGAG	1 cut(s)	250
Bbv12I	GWGCWC	2 cut(s)	163, 251
BbvI	GCAGC	1 cut(s)	152
BceAI	ACGGC	1 cut(s)	153
BciT130I	CCWGG	1 cut(s)	269
BcoDI	GTCTC	1 cut(s)	112
BcuI	ACTAGT	1 cut(s)	56
BfaI	CTAG	2 cut(s)	57, 86
BfmI	CTRYAG	1 cut(s)	206
BfoI	RGCGCY	1 cut(s)	92
BisI	GCNGC	1 cut(s)	166
BlsI	GCNGC	1 cut(s)	167
Bme1390I	CCNGG	1 cut(s)	269
Bme18I	GGWCC	2 cut(s)	65, 256
BmgT120I	GGNCC	2 cut(s)	65, 256
BmiI	GGNNCC	2 cut(s)	184, 257
BmrFI	CCNGG	1 cut(s)	269
BmsI	GCATC	1 cut(s)	313
BpuEI	CTTGAG	1 cut(s)	94
BsaJI	CCNNGG	1 cut(s)	97
Bsc4I	CCNNNNNNNGG	1 cut(s)	35
Bse1I	ACTGG	1 cut(s)	40
BseBI	CCWGG	1 cut(s)	269
BseDI	CCNNGG	1 cut(s)	97
BseLI	CCNNNNNNNGG	1 cut(s)	35
BseNI	ACTGG	1 cut(s)	40
BseSI	GKGCMC	2 cut(s)	163, 251
BseXI	GCAGC	1 cut(s)	152
Bsh1236I	CGCG	1 cut(s)	342
BsiHKAI	GWGCWC	2 cut(s)	163, 251
BslFI	GGGAC	2 cut(s)	11, 269
BslI	CCNNNNNNNGG	1 cut(s)	35
BsmAI	GTCTC	1 cut(s)	112
BsmFI	GGGAC	2 cut(s)	11, 269
Bsp1286I	GDGCHC	2 cut(s)	163, 251
BspACI	CCGC	2 cut(s)	336, 382
BspFNI	CGCG	1 cut(s)	342
BspLI	GGNNCC	2 cut(s)	184, 257
BsrI	ACTGG	1 cut(s)	40
BssECI	CCNNGG	1 cut(s)	97
BssSI	CACGAG	1 cut(s)	250
Bst2BI	CACGAG	1 cut(s)	250
Bst2UI	CCWGG	1 cut(s)	269
Bst4CI	ACNGT	1 cut(s)	199
BstC8I	GCNNGC	3 cut(s)	145, 163, 338
BstFNI	CGCG	1 cut(s)	342
BstH2I	RGCGCY	1 cut(s)	92
BstHHI	GCGC	2 cut(s)	91, 342
BstMAI	GTCTC	1 cut(s)	112
BstNI	CCWGG	1 cut(s)	269
BstSCI	CCNGG	1 cut(s)	267
BstSFI	CTRYAG	1 cut(s)	206
BstSLI	GKGCMC	2 cut(s)	163, 251
BstUI	CGCG	1 cut(s)	342
BstV1I	GCAGC	1 cut(s)	152
BtgZI	GCGATG	1 cut(s)	117
BtsIMutI	CAGTG	1 cut(s)	251
Cac8I	GCNNGC	3 cut(s)	145, 163, 338
CfoI	GCGC	2 cut(s)	91, 342
Cfr13I	GGNCC	2 cut(s)	65, 256
Csp6I	GTAC	1 cut(s)	195
CviAII	CATG	1 cut(s)	233
CviJI	RGCY	5 cut(s)	114, 154, 185, 205, 211
CviKI_1	RGCY	5 cut(s)	114, 154, 185, 205, 211
CviQI	GTAC	1 cut(s)	195
Eco47I	GGWCC	2 cut(s)	65, 256
Eco47III	AGCGCT	1 cut(s)	90
EcoO109I	RGGNCCY	1 cut(s)	256
EcoRII	CCWGG	1 cut(s)	267
FaeI	CATG	1 cut(s)	236
FaiI	YATR	6 cut(s)	94, 174, 188, 193, 234, 372
FaqI	GGGAC	2 cut(s)	11, 269
FatI	CATG	1 cut(s)	232
FauI	CCCGC	2 cut(s)	329, 389
Fnu4HI	GCNGC	1 cut(s)	166
Fsp4HI	GCNGC	1 cut(s)	166
FspBI	CTAG	2 cut(s)	57, 86
GlaI	GCGC	2 cut(s)	90, 341
GluI	GCNGC	1 cut(s)	166
HaeII	RGCGCY	1 cut(s)	92
HhaI	GCGC	2 cut(s)	91, 342
Hin1II	CATG	1 cut(s)	236
Hin6I	GCGC	2 cut(s)	89, 340
HinP1I	GCGC	2 cut(s)	89, 340
HindIII	AAGCTT	1 cut(s)	152
HinfI	GANTC	1 cut(s)	39
Hpy166II	GTNNAC	4 cut(s)	79, 161, 249, 305
Hpy188I	TCNGA	3 cut(s)	33, 69, 322
Hpy188III	TCNNGA	1 cut(s)	287
Hpy8I	GTNNAC	4 cut(s)	79, 161, 249, 305
HpyCH4III	ACNGT	1 cut(s)	199
HpyCH4V	TGCA	4 cut(s)	161, 232, 249, 296
Hsp92II	CATG	1 cut(s)	236
HspAI	GCGC	2 cut(s)	89, 340
LmnI	GCTCC	1 cut(s)	182
LpnPI	CCDG	3 cut(s)	21, 254, 281
Lsp1109I	GCAGC	1 cut(s)	152
LweI	GCATC	1 cut(s)	313
MaeI	CTAG	2 cut(s)	57, 86
MaeIII	GTNAC	1 cut(s)	359
MhlI	GDGCHC	2 cut(s)	163, 251
MluCI	AATT	1 cut(s)	227
MmeI	TCCRAC	2 cut(s)	42, 56
MnlI	CCTC	4 cut(s)	39, 92, 246, 326
MspR9I	CCNGG	1 cut(s)	269
MvaI	CCWGG	1 cut(s)	269
MvnI	CGCG	1 cut(s)	342
NlaIII	CATG	1 cut(s)	236
NlaIV	GGNNCC	2 cut(s)	184, 257
NmeAIII	GCCGAG	1 cut(s)	122
PfeI	GAWTC	1 cut(s)	39
PkrI	GCNGC	1 cut(s)	167
PpuMI	RGGWCCY	1 cut(s)	256
Psp5II	RGGWCCY	1 cut(s)	256
Psp6I	CCWGG	1 cut(s)	267
PspGI	CCWGG	1 cut(s)	267
PspN4I	GGNNCC	2 cut(s)	184, 257
PspPI	GGNCC	2 cut(s)	65, 256
PspPPI	RGGWCCY	1 cut(s)	256
RsaI	GTAC	1 cut(s)	196
RsaNI	GTAC	1 cut(s)	195
SatI	GCNGC	1 cut(s)	166
Sau96I	GGNCC	2 cut(s)	65, 256
ScrFI	CCNGG	1 cut(s)	269
SduI	GDGCHC	2 cut(s)	163, 251
SetI	ASST	5 cut(s)	67, 156, 207, 213, 261
SfaNI	GCATC	1 cut(s)	313
SfcI	CTRYAG	1 cut(s)	206
SinI	GGWCC	2 cut(s)	65, 256
SmlI	CTYRAG	1 cut(s)	109
SmoI	CTYRAG	1 cut(s)	109
SpeI	ACTAGT	1 cut(s)	56
Sse9I	AATT	1 cut(s)	227
SsiI	CCGC	2 cut(s)	336, 382
SspMI	CTAG	2 cut(s)	57, 86
StyD4I	CCNGG	1 cut(s)	267
TaaI	ACNGT	1 cut(s)	199
TaqI	TCGA	2 cut(s)	213, 367
TasI	AATT	1 cut(s)	227
TatI	WGTACW	1 cut(s)	194
TfiI	GAWTC	1 cut(s)	39
TscAI	CASTG	1 cut(s)	251
TseI	GCWGC	1 cut(s)	165
TspDTI	ATGAA	1 cut(s)	387
TspGWI	ACGGA	1 cut(s)	96
TspRI	CASTG	1 cut(s)	251
VneI	GTGCAC	2 cut(s)	159, 247
VpaK11BI	GGWCC	2 cut(s)	65, 256
XspI	CTAG	2 cut(s)	57, 86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.