Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000899

Physical Location & Seq

Genomic Coordinates Forward (+)

76206563 .. 76207313

Gene Structure 751 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ52873

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGGTTTGCTCCAAATCAATCCCTCTTGGTTTCTTACTGTTCTGTCTTTTCCACCATGTTGCCATTGGTGCTTCCCCGCTTTACCATTTCTGTTTCAGCAAACAGAACTACACTGCCAATAGCCCATACGAGGCCAACTTGAATCAGTTGCTCGATCTTCTATACACCAAAGTCCCTCCTACTGGATTTGGATCTGGTTCAACAGGTCAAGACCCGAACCAAGTGAACGGGCTGGCGCTCTGCCGTGGTGATGTTTCAAGCAACAATTGCAAGACTTGTGTCGTCGACGCAAGCAAGAAGCTCGGTGAGCGCTGCCCAGATAGAAAAGGAGCCATAATATGGTATGATAATTGCATGTTAAAGTACTCAGATGTGAATTTCGTTGGCCAAATTGATAACGCAAACAGGTTCTATATGTGGAATGTTCAAGAAGTAGATAACCCTACACCTTTCAATGAGAAGGTTAAAGAATTATTAAGTGGATTATCTACTACAGCTTCTTCTTCTAATCCAAAGCTCTATGCTACTGGCGAGGTGGAGCTCGATAAATCAACCAAGCTATATGGTTTAGTTCAATGCACGAGGGATCTATCTGAACCGGATTGCAAGAAGTGTCTTGATGGCGCAATAAGCGAACTGCCAAACTGTTGTGATGCAAAGCAGGGTGGGCGGGTTGTGGGCGGGAGTTGTAACTTTAGATACGAAATTTACCCTTTTGTTGATTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0030312 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071944 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1204 Stress-antifung

Protein Analysis

242

Amino Acids

26.63

Weight (kDa)

5.93

Isoelectric Point (pI)

26.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stress-antifung	PF01657	31 - 124	2.4e-26	Salt stress response/antifungal
Stress-antifung	PF01657	146 - 236	3.4e-15	Salt stress response/antifungal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000899)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22060
fragaria_vesca	FvH4_2g10161
malus_domestica	MD05G1056000.v1.1 MD05G1056300.v1.1 MD10G1064400.v1.1
prunus_persica	Prupe.3G109800_v2.0.a1 Prupe.3G110100_v2.0.a1 Prupe.3G110200_v2.0.a1 Prupe.3G110300_v2.0.a1 Prupe.8G086600_v2.0.a1
pyrus_communis	pycom05g04770 pycom05g04780
rosa_chinensis	RchiOBHm_Chr1g0328011 RchiOBHm_Chr1g0328031 RchiOBHm_Chr2g0158681 RchiOBHm_Chr2g0160231 RchiOBHm_Chr2g0160251
rosa_laevigata	RLG00000014015 RLG00000021106 RLG00000021206 RLG00000021207 RLG00000029943 RLG00000029944 RLG00000029946 RLG00000029948
rosa_multiflora	Rmu_co8269469.1_g000001 Rmu_co8408147.1_g000001 Rmu_sc0000403.1_g000003 Rmu_sc0008269.1_g000008 Rmu_sc0020806.1_g000002
rosa_roxburghii	Rroxscaffold_2G00091070 Rroxscaffold_2G00091110 Rroxscaffold_4G00321960 Rroxscaffold_4G00321970 Rroxscaffold_4G00321980 Rroxscaffold_4G00322000 Rroxscaffold_4G00322030 Rroxscaffold_7G00200860 Rroxscaffold_7G00200940
rosa_rugosa	Rorug01G0073200 Rorug01G0073200 Rorug01G0073300 Rorug02G0471400 Rorug02G0472000 Rorug02G0482400 Rorug02G0482400
rosa_samantha	Rh1BG071900 Rh1BG072100 Rh2AG537200 Rh2AG547800 Rh2BG550400 Rh2BG561200 Rh2BG561400 Rh2CG520900 Rh2CG531800 Rh2CG532100 Rh6AG153200 Rh6CG149000
rosa_wichuraiana	Rw0G019500 Rw1G006970 Rw1G006980 Rw1G006990 Rw2G044480 Rw2G045320 Rw6G013180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	339
AccI	GTMKAC	1 cut(s)	285
AciI	CCGC	3 cut(s)	77, 670, 681
AclWI	GGATC	2 cut(s)	199, 594
AcoI	YGGCCR	1 cut(s)	385
AcsI	RAATTY	2 cut(s)	376, 705
AfaI	GTAC	1 cut(s)	365
AfeI	AGCGCT	1 cut(s)	311
AfiI	CCNNNNNNNGG	3 cut(s)	130, 182, 339
AgsI	TTSAA	6 cut(s)	142, 201, 258, 428, 454, 575
AluBI	AGCT	5 cut(s)	301, 497, 517, 541, 559
AluI	AGCT	5 cut(s)	301, 497, 517, 541, 559
Alw21I	GWGCWC	1 cut(s)	543
AlwI	GGATC	2 cut(s)	199, 594
Aor51HI	AGCGCT	1 cut(s)	311
AoxI	GGCC	2 cut(s)	132, 385
ApeKI	GCWGC	1 cut(s)	312
ApoI	RAATTY	2 cut(s)	376, 705
AspLEI	GCGC	3 cut(s)	238, 312, 626
AsuHPI	GGTGA	2 cut(s)	260, 317
BalI	TGGCCA	1 cut(s)	387
BanII	GRGCYC	1 cut(s)	543
BauI	CACGAG	1 cut(s)	580
Bbv12I	GWGCWC	1 cut(s)	543
BbvI	GCAGC	1 cut(s)	299
BccI	CCATC	1 cut(s)	614
BceAI	ACGGC	1 cut(s)	228
BcgI	CGANNNNNNTGC	2 cut(s)	283, 317
BfmI	CTRYAG	1 cut(s)	492
BfoI	RGCGCY	2 cut(s)	239, 313
BisI	GCNGC	1 cut(s)	313
BlsI	GCNGC	1 cut(s)	314
BmcAI	AGTACT	1 cut(s)	365
BmiI	GGNNCC	1 cut(s)	331
BmsI	GCATC	1 cut(s)	643
BoxI	GACNNNNGTC	1 cut(s)	278
BsaBI	GATNNNNATC	1 cut(s)	190
BsaJI	CCNNGG	1 cut(s)	244
BsaWI	WCCGGW	1 cut(s)	598
Bsc4I	CCNNNNNNNGG	3 cut(s)	130, 182, 339
Bse1I	ACTGG	2 cut(s)	187, 532
Bse8I	GATNNNNATC	1 cut(s)	190
BseDI	CCNNGG	1 cut(s)	244
BseJI	GATNNNNATC	1 cut(s)	190
BseLI	CCNNNNNNNGG	3 cut(s)	130, 182, 339
BseMII	CTCAG	1 cut(s)	381
BseNI	ACTGG	2 cut(s)	187, 532
BseXI	GCAGC	1 cut(s)	299
BshFI	GGCC	2 cut(s)	134, 387
BsiHKAI	GWGCWC	1 cut(s)	543
BsiSI	CCGG	1 cut(s)	599
BslFI	GGGAC	1 cut(s)	158
BslI	CCNNNNNNNGG	3 cut(s)	130, 182, 339
BsmFI	GGGAC	1 cut(s)	158
BsnI	GGCC	2 cut(s)	134, 387
Bsp1286I	GDGCHC	1 cut(s)	543
Bsp143I	GATC	3 cut(s)	154, 191, 586
BspACI	CCGC	3 cut(s)	77, 670, 681
BspANI	GGCC	2 cut(s)	134, 387
BspCNI	CTCAG	1 cut(s)	380
BspLI	GGNNCC	1 cut(s)	331
BspPI	GGATC	2 cut(s)	199, 594
BsrI	ACTGG	2 cut(s)	187, 532
BssECI	CCNNGG	1 cut(s)	244
BssMI	GATC	3 cut(s)	154, 191, 586
BssSI	CACGAG	1 cut(s)	580
Bst2BI	CACGAG	1 cut(s)	580
Bst4CI	ACNGT	2 cut(s)	39, 647
BstAPI	GCANNNNNTGC	1 cut(s)	267
BstC8I	GCNNGC	2 cut(s)	234, 292
BstDEI	CTNAG	1 cut(s)	367
BstDSI	CCRYGG	1 cut(s)	244
BstH2I	RGCGCY	2 cut(s)	239, 313
BstHHI	GCGC	3 cut(s)	238, 312, 626
BstKTI	GATC	3 cut(s)	157, 194, 589
BstMBI	GATC	3 cut(s)	154, 191, 586
BstMWI	GCNNNNNNNGC	5 cut(s)	68, 267, 307, 630, 667
BstNSI	RCATGY	1 cut(s)	358
BstPAI	GACNNNNGTC	1 cut(s)	278
BstSFI	CTRYAG	1 cut(s)	492
BstV1I	GCAGC	1 cut(s)	299
BstX2I	RGATCY	2 cut(s)	191, 586
BstYI	RGATCY	2 cut(s)	191, 586
BsuRI	GGCC	2 cut(s)	134, 387
BtgI	CCRYGG	1 cut(s)	244
BtsI	GCAGTG	1 cut(s)	111
BtsIMutI	CAGTG	1 cut(s)	111
Cac8I	GCNNGC	2 cut(s)	234, 292
CfoI	GCGC	3 cut(s)	238, 312, 626
CseI	GACGC	1 cut(s)	296
Csp6I	GTAC	1 cut(s)	364
CviAII	CATG	2 cut(s)	56, 355
CviQI	GTAC	1 cut(s)	364
DdeI	CTNAG	1 cut(s)	367
DpnI	GATC	3 cut(s)	156, 193, 588
DpnII	GATC	3 cut(s)	154, 191, 586
EaeI	YGGCCR	1 cut(s)	385
Ecl136II	GAGCTC	1 cut(s)	541
Eco24I	GRGCYC	1 cut(s)	543
Eco47III	AGCGCT	1 cut(s)	311
Eco53kI	GAGCTC	1 cut(s)	541
EcoICRI	GAGCTC	1 cut(s)	541
EcoT38I	GRGCYC	1 cut(s)	543
FaeI	CATG	2 cut(s)	59, 358
FaqI	GGGAC	1 cut(s)	158
FatI	CATG	2 cut(s)	55, 354
FauI	CCCGC	3 cut(s)	84, 663, 674
FblI	GTMKAC	1 cut(s)	285
Fnu4HI	GCNGC	1 cut(s)	313
FriOI	GRGCYC	1 cut(s)	543
Fsp4HI	GCNGC	1 cut(s)	313
GlaI	GCGC	3 cut(s)	237, 311, 625
GluI	GCNGC	1 cut(s)	313
HaeII	RGCGCY	2 cut(s)	239, 313
HaeIII	GGCC	2 cut(s)	134, 387
HapII	CCGG	1 cut(s)	599
HgaI	GACGC	1 cut(s)	296
HhaI	GCGC	3 cut(s)	238, 312, 626
Hin1II	CATG	2 cut(s)	59, 358
Hin6I	GCGC	3 cut(s)	236, 310, 624
HinP1I	GCGC	3 cut(s)	236, 310, 624
HincII	GTYRAC	1 cut(s)	286
HindII	GTYRAC	1 cut(s)	286
HinfI	GANTC	2 cut(s)	142, 722
HpaII	CCGG	1 cut(s)	599
HphI	GGTGA	2 cut(s)	260, 317
Hpy166II	GTNNAC	2 cut(s)	226, 286
Hpy188I	TCNGA	2 cut(s)	370, 595
Hpy188III	TCNNGA	3 cut(s)	209, 428, 617
Hpy8I	GTNNAC	2 cut(s)	226, 286
Hpy99I	CGWCG	2 cut(s)	287, 290
HpyAV	CCTTC	1 cut(s)	454
HpyCH4III	ACNGT	2 cut(s)	39, 647
HpyCH4V	TGCA	5 cut(s)	270, 354, 579, 606, 656
HpyF10VI	GCNNNNNNNGC	5 cut(s)	68, 267, 307, 630, 667
HpyF3I	CTNAG	1 cut(s)	367
Hsp92II	CATG	2 cut(s)	59, 358
HspAI	GCGC	3 cut(s)	236, 310, 624
Kzo9I	GATC	3 cut(s)	154, 191, 586
LmnI	GCTCC	3 cut(s)	14, 329, 538
LpnPI	CCDG	9 cut(s)	168, 180, 189, 218, 330, 391, 513, 612, 647
Lsp1109I	GCAGC	1 cut(s)	299
LweI	GCATC	1 cut(s)	643
MaeIII	GTNAC	1 cut(s)	689
MalI	GATC	3 cut(s)	156, 193, 588
MboI	GATC	3 cut(s)	154, 191, 586
MboII	GAAGA	3 cut(s)	149, 492, 495
MfeI	CAATTG	1 cut(s)	265
MflI	RGATCY	2 cut(s)	191, 586
MhlI	GDGCHC	1 cut(s)	543
MlsI	TGGCCA	1 cut(s)	387
MluCI	AATT	6 cut(s)	265, 349, 376, 390, 470, 705
MluNI	TGGCCA	1 cut(s)	387
MnlI	CCTC	5 cut(s)	33, 124, 186, 526, 576
Mox20I	TGGCCA	1 cut(s)	387
MscI	TGGCCA	1 cut(s)	387
MseI	TTAA	4 cut(s)	359, 465, 476, 727
Msp20I	TGGCCA	1 cut(s)	387
MspI	CCGG	1 cut(s)	599
MunI	CAATTG	1 cut(s)	265
MwoI	GCNNNNNNNGC	5 cut(s)	68, 267, 307, 630, 667
NdeII	GATC	3 cut(s)	154, 191, 586
NlaIII	CATG	2 cut(s)	59, 358
NlaIV	GGNNCC	1 cut(s)	331
NspI	RCATGY	1 cut(s)	358
PfeI	GAWTC	2 cut(s)	142, 722
PflMI	CCANNNNNTGG	1 cut(s)	339
PkrI	GCNGC	1 cut(s)	314
PshAI	GACNNNNGTC	1 cut(s)	278
Psp124BI	GAGCTC	1 cut(s)	543
PspN4I	GGNNCC	1 cut(s)	331
PsuI	RGATCY	2 cut(s)	191, 586
RsaI	GTAC	1 cut(s)	365
RsaNI	GTAC	1 cut(s)	364
SacI	GAGCTC	1 cut(s)	543
SalI	GTCGAC	1 cut(s)	284
SaqAI	TTAA	4 cut(s)	359, 465, 476, 727
SatI	GCNGC	1 cut(s)	313
Sau3AI	GATC	3 cut(s)	154, 191, 586
ScaI	AGTACT	1 cut(s)	365
SduI	GDGCHC	1 cut(s)	543
SfaNI	GCATC	1 cut(s)	643
SfcI	CTRYAG	1 cut(s)	492
SgrDI	CGTCGACG	1 cut(s)	284
Sse9I	AATT	6 cut(s)	265, 349, 376, 390, 470, 705
SsiI	CCGC	3 cut(s)	77, 670, 681
SstI	GAGCTC	1 cut(s)	543
TaaI	ACNGT	2 cut(s)	39, 647
TaqI	TCGA	3 cut(s)	153, 285, 543
TasI	AATT	6 cut(s)	265, 349, 376, 390, 470, 705
TatI	WGTACW	1 cut(s)	363
TfiI	GAWTC	2 cut(s)	142, 722
Tru1I	TTAA	4 cut(s)	359, 465, 476, 727
Tru9I	TTAA	4 cut(s)	359, 465, 476, 727
TscAI	CASTG	1 cut(s)	118
TseI	GCWGC	1 cut(s)	312
TspRI	CASTG	1 cut(s)	118
Van91I	CCANNNNNTGG	1 cut(s)	339
XapI	RAATTY	2 cut(s)	376, 705
XceI	RCATGY	1 cut(s)	358
XcmI	CCANNNNNNNNNTGG	1 cut(s)	62
XmiI	GTMKAC	1 cut(s)	285
ZrmI	AGTACT	1 cut(s)	365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.