Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0000899

Physical Location & Seq

Genomic Coordinates Forward (+)

11130704 .. 11131618

Gene Structure 915 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG072100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGTTCTTCTCGAAATCAATCCCTCTGTCTTTGTTGCTCTCCTGTCTTTTGCACCATGCAGCCTCTGGTGCTTCCCCACTTTATCATATCTGTTTCAGCAAGGCAAACTACACTGGTAGTAGTCCATACCATGCTAACTTGGACACGATGCTCAATCATTTATCCACCAAAGTCCCTCCAACTGGATTCGGGGTTGCTTCAACTGGTCAAGGTCCGAACAAAGTAAACGGACTAGCGCTATGCCGAGGCGATGTCTCAAGCCCAAACTGTAAGACTTGTATCATTGAAGCAAGCAAAGAGCTTCGTGCACGCTGCCCTCATAAAAAAGGAGCCATAATATGGTACGACCATTGCATGCTGAAATACTCAAATGGCAACTTCTTTGGGCAAATTGATAGCACAAACAAGTTCTATATGTGGAACACCGAGACCGTAAGCAATCCCAGACCATTCAATAAGAATGTTAACAAATTGTTGAGTGGGTTGTCTAATAAAGCTTCTTCTAACCGAAAGCTTTATAGTACTGGTGAGCTACAGCTCGATAAATGGAAAAAATTGTATGGTTTAGTTCAGTGCACGAGGGACCTATCTAGCCTGGAATGTAAGAAGTGTCTTGATGTTGCAATAAGTGAACTGCCGAAAGGTTCTGATGCGAAACGAGGCGGGCGCGTAGCAAGTGGGAGTTGTAACTTTCGATATGAACTCTCCCGCTTTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0030312 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071944 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1204 Stress-antifung

Protein Analysis

239

Amino Acids

26.35

Weight (kDa)

9.47

Isoelectric Point (pI)

41.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stress-antifung	PF01657	31 - 124	4e-25	Salt stress response/antifungal
Stress-antifung	PF01657	144 - 235	4.5e-14	Salt stress response/antifungal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000899)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22060
fragaria_vesca	FvH4_2g10161
malus_domestica	MD05G1056000.v1.1 MD05G1056300.v1.1 MD10G1064400.v1.1
prunus_persica	Prupe.3G109800_v2.0.a1 Prupe.3G110100_v2.0.a1 Prupe.3G110200_v2.0.a1 Prupe.3G110300_v2.0.a1 Prupe.8G086600_v2.0.a1
pyrus_communis	pycom05g04770 pycom05g04780
rosa_chinensis	RchiOBHm_Chr1g0328011 RchiOBHm_Chr1g0328031 RchiOBHm_Chr2g0158681 RchiOBHm_Chr2g0160231 RchiOBHm_Chr2g0160251
rosa_laevigata	RLG00000014015 RLG00000021106 RLG00000021206 RLG00000021207 RLG00000029943 RLG00000029944 RLG00000029946 RLG00000029948
rosa_multiflora	Rmu_co8269469.1_g000001 Rmu_co8408147.1_g000001 Rmu_sc0000403.1_g000003 Rmu_sc0008269.1_g000008 Rmu_sc0020806.1_g000002
rosa_roxburghii	Rroxscaffold_2G00091070 Rroxscaffold_2G00091110 Rroxscaffold_4G00321960 Rroxscaffold_4G00321970 Rroxscaffold_4G00321980 Rroxscaffold_4G00322000 Rroxscaffold_4G00322030 Rroxscaffold_7G00200860 Rroxscaffold_7G00200940
rosa_rugosa	Rorug01G0073200 Rorug01G0073200 Rorug01G0073300 Rorug02G0471400 Rorug02G0472000 Rorug02G0482400 Rorug02G0482400
rosa_samantha	Rh1BG071900 Rh1BG072100 Rh2AG537200 Rh2AG547800 Rh2BG550400 Rh2BG561200 Rh2BG561400 Rh2CG520900 Rh2CG531800 Rh2CG532100 Rh6AG153200 Rh6CG149000
rosa_wichuraiana	Rw0G019500 Rw1G006970 Rw1G006980 Rw1G006990 Rw2G044480 Rw2G045320 Rw6G013180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	339
AccII	CGCG	1 cut(s)	669
AciI	CCGC	2 cut(s)	663, 709
AfaI	GTAC	2 cut(s)	344, 523
AfeI	AGCGCT	1 cut(s)	237
AfiI	CCNNNNNNNGG	2 cut(s)	182, 339
AgsI	TTSAA	3 cut(s)	201, 287, 454
AjnI	CCWGG	1 cut(s)	594
AluBI	AGCT	5 cut(s)	301, 497, 514, 532, 538
AluI	AGCT	5 cut(s)	301, 497, 514, 532, 538
Alw21I	GWGCWC	2 cut(s)	310, 578
Alw26I	GTCTC	2 cut(s)	259, 422
Alw44I	GTGCAC	2 cut(s)	306, 574
AlwNI	CAGNNNCTG	1 cut(s)	65
Aor51HI	AGCGCT	1 cut(s)	237
ApaLI	GTGCAC	2 cut(s)	306, 574
ApeKI	GCWGC	2 cut(s)	59, 312
AspLEI	GCGC	2 cut(s)	238, 669
AspS9I	GGNCC	2 cut(s)	212, 583
AsuHPI	GGTGA	1 cut(s)	539
AvaII	GGWCC	2 cut(s)	212, 583
BaeGI	GKGCMC	2 cut(s)	310, 578
BauI	CACGAG	1 cut(s)	577
Bbv12I	GWGCWC	2 cut(s)	310, 578
BbvI	GCAGC	2 cut(s)	71, 299
BciT130I	CCWGG	1 cut(s)	596
BcoDI	GTCTC	2 cut(s)	259, 422
BfaI	CTAG	2 cut(s)	233, 591
BfmI	CTRYAG	1 cut(s)	533
BfoI	RGCGCY	1 cut(s)	239
BisI	GCNGC	2 cut(s)	60, 313
BlsI	GCNGC	2 cut(s)	61, 314
BmcAI	AGTACT	1 cut(s)	523
Bme1390I	CCNGG	1 cut(s)	596
Bme18I	GGWCC	2 cut(s)	212, 583
BmgT120I	GGNCC	2 cut(s)	212, 583
BmiI	GGNNCC	2 cut(s)	331, 584
BmrFI	CCNGG	1 cut(s)	596
BmsI	GCATC	2 cut(s)	138, 640
BpuEI	CTTGAG	1 cut(s)	241
BsaI	GGTCTC	1 cut(s)	422
BsaJI	CCNNGG	1 cut(s)	244
Bsc4I	CCNNNNNNNGG	2 cut(s)	182, 339
Bse1I	ACTGG	4 cut(s)	118, 187, 208, 529
Bse3DI	GCAATG	1 cut(s)	349
BseBI	CCWGG	1 cut(s)	596
BseDI	CCNNGG	1 cut(s)	244
BseLI	CCNNNNNNNGG	2 cut(s)	182, 339
BseMI	GCAATG	1 cut(s)	349
BseNI	ACTGG	4 cut(s)	118, 187, 208, 529
BseSI	GKGCMC	2 cut(s)	310, 578
BseXI	GCAGC	2 cut(s)	71, 299
Bsh1236I	CGCG	1 cut(s)	669
BsiHKAI	GWGCWC	2 cut(s)	310, 578
BslFI	GGGAC	2 cut(s)	158, 596
BslI	CCNNNNNNNGG	2 cut(s)	182, 339
BsmAI	GTCTC	2 cut(s)	259, 422
BsmFI	GGGAC	2 cut(s)	158, 596
Bso31I	GGTCTC	1 cut(s)	422
Bsp1286I	GDGCHC	2 cut(s)	310, 578
BspACI	CCGC	2 cut(s)	663, 709
BspFNI	CGCG	1 cut(s)	669
BspLI	GGNNCC	2 cut(s)	331, 584
BspTNI	GGTCTC	1 cut(s)	422
BsrDI	GCAATG	1 cut(s)	349
BsrI	ACTGG	4 cut(s)	118, 187, 208, 529
BssECI	CCNNGG	1 cut(s)	244
BssSI	CACGAG	1 cut(s)	577
Bst2BI	CACGAG	1 cut(s)	577
Bst2UI	CCWGG	1 cut(s)	596
Bst4CI	ACNGT	2 cut(s)	269, 433
BstC8I	GCNNGC	4 cut(s)	292, 310, 356, 665
BstFNI	CGCG	1 cut(s)	669
BstH2I	RGCGCY	1 cut(s)	239
BstHHI	GCGC	2 cut(s)	238, 669
BstMAI	GTCTC	2 cut(s)	259, 422
BstMWI	GCNNNNNNNGC	1 cut(s)	68
BstNI	CCWGG	1 cut(s)	596
BstNSI	RCATGY	1 cut(s)	358
BstSCI	CCNGG	1 cut(s)	594
BstSFI	CTRYAG	1 cut(s)	533
BstSLI	GKGCMC	2 cut(s)	310, 578
BstUI	CGCG	1 cut(s)	669
BstV1I	GCAGC	2 cut(s)	71, 299
BtgZI	GCGATG	1 cut(s)	264
BtsIMutI	CAGTG	2 cut(s)	111, 578
Cac8I	GCNNGC	4 cut(s)	292, 310, 356, 665
CaiI	CAGNNNCTG	1 cut(s)	65
CfoI	GCGC	2 cut(s)	238, 669
Cfr13I	GGNCC	2 cut(s)	212, 583
Csp6I	GTAC	2 cut(s)	343, 522
CviAII	CATG	3 cut(s)	56, 131, 355
CviJI	RGCY	9 cut(s)	62, 261, 301, 332, 497, 514, 532, 538, 594
CviKI_1	RGCY	9 cut(s)	62, 261, 301, 332, 497, 514, 532, 538, 594
CviQI	GTAC	2 cut(s)	343, 522
Eco31I	GGTCTC	1 cut(s)	422
Eco47I	GGWCC	2 cut(s)	212, 583
Eco47III	AGCGCT	1 cut(s)	237
EcoO109I	RGGNCCY	1 cut(s)	583
EcoRII	CCWGG	1 cut(s)	594
FaeI	CATG	3 cut(s)	59, 134, 358
FaqI	GGGAC	2 cut(s)	158, 596
FatI	CATG	3 cut(s)	55, 130, 354
FauI	CCCGC	2 cut(s)	656, 716
Fnu4HI	GCNGC	2 cut(s)	60, 313
Fsp4HI	GCNGC	2 cut(s)	60, 313
FspBI	CTAG	2 cut(s)	233, 591
GlaI	GCGC	2 cut(s)	237, 668
GluI	GCNGC	2 cut(s)	60, 313
HaeII	RGCGCY	1 cut(s)	239
HhaI	GCGC	2 cut(s)	238, 669
Hin1II	CATG	3 cut(s)	59, 134, 358
Hin6I	GCGC	2 cut(s)	236, 667
HinP1I	GCGC	2 cut(s)	236, 667
HincII	GTYRAC	1 cut(s)	466
HindII	GTYRAC	1 cut(s)	466
HindIII	AAGCTT	2 cut(s)	495, 512
HinfI	GANTC	1 cut(s)	186
HpaI	GTTAAC	1 cut(s)	466
HphI	GGTGA	1 cut(s)	539
Hpy166II	GTNNAC	5 cut(s)	226, 308, 466, 576, 632
Hpy188I	TCNGA	2 cut(s)	216, 649
Hpy188III	TCNNGA	2 cut(s)	10, 614
Hpy8I	GTNNAC	5 cut(s)	226, 308, 466, 576, 632
HpyCH4III	ACNGT	2 cut(s)	269, 433
HpyCH4V	TGCA	6 cut(s)	52, 59, 308, 354, 576, 623
HpyF10VI	GCNNNNNNNGC	1 cut(s)	68
Hsp92II	CATG	3 cut(s)	59, 134, 358
HspAI	GCGC	2 cut(s)	236, 667
KspAI	GTTAAC	1 cut(s)	466
LmnI	GCTCC	1 cut(s)	329
LpnPI	CCDG	9 cut(s)	51, 55, 99, 168, 189, 457, 510, 581, 608
Lsp1109I	GCAGC	2 cut(s)	71, 299
LweI	GCATC	2 cut(s)	138, 640
MaeI	CTAG	2 cut(s)	233, 591
MaeIII	GTNAC	1 cut(s)	686
MboII	GAAGA	1 cut(s)	492
MhlI	GDGCHC	2 cut(s)	310, 578
MluCI	AATT	3 cut(s)	390, 470, 554
MmeI	TCCRAC	1 cut(s)	203
MnlI	CCTC	7 cut(s)	33, 73, 186, 239, 327, 573, 653
MseI	TTAA	1 cut(s)	465
MspR9I	CCNGG	1 cut(s)	596
MvaI	CCWGG	1 cut(s)	596
MvnI	CGCG	1 cut(s)	669
MwoI	GCNNNNNNNGC	1 cut(s)	68
NlaIII	CATG	3 cut(s)	59, 134, 358
NlaIV	GGNNCC	2 cut(s)	331, 584
NmeAIII	GCCGAG	1 cut(s)	269
NspI	RCATGY	1 cut(s)	358
PaeI	GCATGC	1 cut(s)	358
PfeI	GAWTC	1 cut(s)	186
PflMI	CCANNNNNTGG	1 cut(s)	339
PkrI	GCNGC	2 cut(s)	61, 314
PpuMI	RGGWCCY	1 cut(s)	583
Psp5II	RGGWCCY	1 cut(s)	583
Psp6I	CCWGG	1 cut(s)	594
PspGI	CCWGG	1 cut(s)	594
PspN4I	GGNNCC	2 cut(s)	331, 584
PspPI	GGNCC	2 cut(s)	212, 583
PspPPI	RGGWCCY	1 cut(s)	583
PstNI	CAGNNNCTG	1 cut(s)	65
RsaI	GTAC	2 cut(s)	344, 523
RsaNI	GTAC	2 cut(s)	343, 522
SaqAI	TTAA	1 cut(s)	465
SatI	GCNGC	2 cut(s)	60, 313
Sau96I	GGNCC	2 cut(s)	212, 583
ScaI	AGTACT	1 cut(s)	523
ScrFI	CCNGG	1 cut(s)	596
SduI	GDGCHC	2 cut(s)	310, 578
SetI	ASST	8 cut(s)	214, 303, 499, 516, 534, 540, 588, 646
SfaNI	GCATC	2 cut(s)	138, 640
SfcI	CTRYAG	1 cut(s)	533
SinI	GGWCC	2 cut(s)	212, 583
SmlI	CTYRAG	1 cut(s)	256
SmoI	CTYRAG	1 cut(s)	256
SphI	GCATGC	1 cut(s)	358
Sse9I	AATT	3 cut(s)	390, 470, 554
SsiI	CCGC	2 cut(s)	663, 709
SspMI	CTAG	2 cut(s)	233, 591
StyD4I	CCNGG	1 cut(s)	594
TaaI	ACNGT	2 cut(s)	269, 433
TaqI	TCGA	3 cut(s)	11, 540, 694
TasI	AATT	3 cut(s)	390, 470, 554
TatI	WGTACW	1 cut(s)	521
TfiI	GAWTC	1 cut(s)	186
Tru1I	TTAA	1 cut(s)	465
Tru9I	TTAA	1 cut(s)	465
TscAI	CASTG	2 cut(s)	118, 578
TseI	GCWGC	2 cut(s)	59, 312
TspDTI	ATGAA	1 cut(s)	714
TspGWI	ACGGA	1 cut(s)	243
TspRI	CASTG	2 cut(s)	118, 578
Van91I	CCANNNNNTGG	1 cut(s)	339
VneI	GTGCAC	2 cut(s)	306, 574
VpaK11BI	GGWCC	2 cut(s)	212, 583
XceI	RCATGY	1 cut(s)	358
XcmI	CCANNNNNNNNNTGG	1 cut(s)	62
XspI	CTAG	2 cut(s)	233, 591
ZrmI	AGTACT	1 cut(s)	523

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.