Rroxscaffold_7G00200940

Cysteine-rich repeat secretory protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Forward (+)
48411950 .. 48412684
735 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00200940.1

Sequence Viewer

Length: 735 bp
ATGTTGTGCTTTAAAACAATCCCTCTAGGTTTCATAGTCTTCTGTCTTTTCATGCACTCATCCTTTGGTGCTTCCTCACTCAACCATTTCTGTTTCAGCCATGAAAACTACACTGCCAATAGCACATATGATGCACACTTGACTCGGTTATTCATCCTTTTACAGACCAAAGTTCCTCCTACCGGATTTGGCCTTGCTTCCACTGGTCAAGCCCAAAAGAAAGCGAATGGCCTTGCACTTTGCCGAGGCGATGCCTCAAGTGAAGATTGCACTACTTGTGTGGTTGATGCAAGCAAAGATATTAGAGAGTTCTGCCCGAACAGCAAAGGAGCCATAATATGGTATGACCACTGCCTCTTAAAGTACTCAAATGTGGACTTCTTTGGGAAAATTGATAACAAAAACAAGTTCTATATGTGGAACGTTCAAGAAGTACAGAATCCTACTCTATTCAATGAGAGAGTTAAGGAATTGTTGAGTGGATTAGCTGTTGAAGCTTCTGATGGTAGTGCTAATCCCAAGTTTTATGCAACTGGTGAGCTGCAACTTGATACATTCACAACACTATATGGTTTGGCTACATGCACAAGGGACCTCTCGGCCCCAGATTGTAAGAAGTGTCTTGATGGTGCAATAAGCGAATTGCCAAACTGCTGCAATGCAAAGCGAGGTGGGCGTGTTGTAGGTGGGAGTTGTAATGTTGGATTTGAACTTTACCCCATTGTTGGGACATAG

Protein Analysis

244

Amino Acids

26.72

Weight (kDa)

6.5

Isoelectric Point (pI)

31.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Stress-antifung PF01657 31 - 124 1.5e-22 Salt stress response/antifungal
Stress-antifung PF01657 146 - 238 2e-11 Salt stress response/antifungal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 339
AclI AACGTT 1 cut(s) 423
AfaI GTAC 2 cut(s) 365, 435
AfiI CCNNNNNNNGG 4 cut(s) 182, 339, 725, 726
AgsI TTSAA 4 cut(s) 428, 454, 494, 710
AluBI AGCT 3 cut(s) 488, 497, 541
AluI AGCT 3 cut(s) 488, 497, 541
AoxI GGCC 3 cut(s) 190, 229, 600
ApeKI GCWGC 2 cut(s) 541, 654
AspS9I GGNCC 2 cut(s) 592, 601
AsuHPI GGTGA 1 cut(s) 548
AvaII GGWCC 1 cut(s) 592
BbsI GAAGAC 1 cut(s) 31
BbvI GCAGC 2 cut(s) 528, 641
BccI CCATC 2 cut(s) 497, 620
BfaI CTAG 1 cut(s) 26
BisI GCNGC 2 cut(s) 542, 655
BlsI GCNGC 2 cut(s) 543, 656
BmcAI AGTACT 1 cut(s) 365
Bme18I GGWCC 1 cut(s) 592
BmgT120I GGNCC 2 cut(s) 592, 601
BmiI GGNNCC 3 cut(s) 331, 593, 603
BmsI GCATC 3 cut(s) 121, 241, 277
BpiI GAAGAC 1 cut(s) 31
BpuEI CTTGAG 1 cut(s) 241
BsaJI CCNNGG 1 cut(s) 244
BsaWI WCCGGW 1 cut(s) 182
Bsc4I CCNNNNNNNGG 4 cut(s) 182, 339, 725, 726
Bse1I ACTGG 2 cut(s) 208, 538
Bse3DI GCAATG 1 cut(s) 664
BseDI CCNNGG 1 cut(s) 244
BseGI GGATG 2 cut(s) 59, 153
BseLI CCNNNNNNNGG 4 cut(s) 182, 339, 725, 726
BseMI GCAATG 1 cut(s) 664
BseNI ACTGG 2 cut(s) 208, 538
BseXI GCAGC 2 cut(s) 528, 641
BshFI GGCC 3 cut(s) 192, 231, 602
BsiSI CCGG 1 cut(s) 183
BslFI GGGAC 1 cut(s) 605
BslI CCNNNNNNNGG 4 cut(s) 182, 339, 725, 726
BsmFI GGGAC 1 cut(s) 605
BsnI GGCC 3 cut(s) 192, 231, 602
BspANI GGCC 3 cut(s) 192, 231, 602
BspLI GGNNCC 3 cut(s) 331, 593, 603
BsrDI GCAATG 1 cut(s) 664
BsrI ACTGG 2 cut(s) 208, 538
BssECI CCNNGG 1 cut(s) 244
BstC8I GCNNGC 1 cut(s) 292
BstF5I GGATG 2 cut(s) 59, 153
BstMWI GCNNNNNNNGC 3 cut(s) 321, 494, 673
BstNSI RCATGY 1 cut(s) 585
BstV1I GCAGC 2 cut(s) 528, 641
BstV2I GAAGAC 1 cut(s) 31
BsuRI GGCC 3 cut(s) 192, 231, 602
BtgZI GCGATG 1 cut(s) 264
BtsCI GGATG 2 cut(s) 59, 153
BtsI GCAGTG 2 cut(s) 111, 349
BtsIMutI CAGTG 3 cut(s) 111, 201, 349
Cac8I GCNNGC 1 cut(s) 292
Cfr13I GGNCC 2 cut(s) 592, 601
Csp6I GTAC 2 cut(s) 364, 434
CviAII CATG 3 cut(s) 52, 101, 582
CviQI GTAC 2 cut(s) 364, 434
DraI TTTAAA 1 cut(s) 13
Eco47I GGWCC 1 cut(s) 592
EcoO109I RGGNCCY 1 cut(s) 592
FaeI CATG 3 cut(s) 55, 104, 585
FaqI GGGAC 1 cut(s) 605
FatI CATG 3 cut(s) 51, 100, 581
FauNDI CATATG 1 cut(s) 127
Fnu4HI GCNGC 2 cut(s) 542, 655
FokI GGATG 2 cut(s) 46, 140
Fsp4HI GCNGC 2 cut(s) 542, 655
FspBI CTAG 1 cut(s) 26
GluI GCNGC 2 cut(s) 542, 655
HaeIII GGCC 3 cut(s) 192, 231, 602
HapII CCGG 1 cut(s) 183
Hin1II CATG 3 cut(s) 55, 104, 585
HindIII AAGCTT 1 cut(s) 495
HinfI GANTC 2 cut(s) 142, 439
HpaII CCGG 1 cut(s) 183
HphI GGTGA 1 cut(s) 548
Hpy166II GTNNAC 1 cut(s) 376
Hpy188I TCNGA 1 cut(s) 502
Hpy188III TCNNGA 2 cut(s) 428, 623
Hpy8I GTNNAC 1 cut(s) 376
HpyCH4IV ACGT 1 cut(s) 423
HpyF10VI GCNNNNNNNGC 3 cut(s) 321, 494, 673
HpySE526I ACGT 1 cut(s) 423
Hsp92II CATG 3 cut(s) 55, 104, 585
LmnI GCTCC 1 cut(s) 329
LpnPI CCDG 4 cut(s) 189, 196, 519, 618
Lsp1109I GCAGC 2 cut(s) 528, 641
LweI GCATC 3 cut(s) 121, 241, 277
MaeI CTAG 1 cut(s) 26
MaeII ACGT 1 cut(s) 423
MboII GAAGA 2 cut(s) 31, 275
MluCI AATT 3 cut(s) 390, 470, 641
MlyI GAGTC 1 cut(s) 136
MmeI TCCRAC 1 cut(s) 682
MnlI CCTC 8 cut(s) 33, 85, 186, 239, 265, 365, 605, 662
MseI TTAA 3 cut(s) 12, 359, 465
MspI CCGG 1 cut(s) 183
MwoI GCNNNNNNNGC 3 cut(s) 321, 494, 673
NdeI CATATG 1 cut(s) 127
NlaIII CATG 3 cut(s) 55, 104, 585
NlaIV GGNNCC 3 cut(s) 331, 593, 603
NmeAIII GCCGAG 2 cut(s) 269, 578
NspI RCATGY 1 cut(s) 585
PfeI GAWTC 1 cut(s) 439
PflMI CCANNNNNTGG 1 cut(s) 339
PkrI GCNGC 2 cut(s) 543, 656
PleI GAGTC 1 cut(s) 136
PpsI GAGTC 1 cut(s) 136
PpuMI RGGWCCY 1 cut(s) 592
Psp1406I AACGTT 1 cut(s) 423
Psp5II RGGWCCY 1 cut(s) 592
PspN4I GGNNCC 3 cut(s) 331, 593, 603
PspPI GGNCC 2 cut(s) 592, 601
PspPPI RGGWCCY 1 cut(s) 592
RsaI GTAC 2 cut(s) 365, 435
RsaNI GTAC 2 cut(s) 364, 434
SaqAI TTAA 3 cut(s) 12, 359, 465
SatI GCNGC 2 cut(s) 542, 655
Sau96I GGNCC 2 cut(s) 592, 601
ScaI AGTACT 1 cut(s) 365
SchI GAGTC 1 cut(s) 136
SetI ASST 8 cut(s) 31, 426, 490, 499, 543, 597, 673, 688
SfaNI GCATC 3 cut(s) 121, 241, 277
SinI GGWCC 1 cut(s) 592
SmlI CTYRAG 1 cut(s) 256
SmoI CTYRAG 1 cut(s) 256
Sse9I AATT 3 cut(s) 390, 470, 641
SspMI CTAG 1 cut(s) 26
TaiI ACGT 1 cut(s) 426
TasI AATT 3 cut(s) 390, 470, 641
TatI WGTACW 2 cut(s) 363, 433
TfiI GAWTC 1 cut(s) 439
Tru1I TTAA 3 cut(s) 12, 359, 465
Tru9I TTAA 3 cut(s) 12, 359, 465
TscAI CASTG 3 cut(s) 118, 208, 356
TseI GCWGC 2 cut(s) 541, 654
TspDTI ATGAA 4 cut(s) 22, 40, 117, 142
TspRI CASTG 3 cut(s) 118, 208, 356
Van91I CCANNNNNTGG 1 cut(s) 339
VpaK11BI GGWCC 1 cut(s) 592
XceI RCATGY 1 cut(s) 585
XspI CTAG 1 cut(s) 26
ZrmI AGTACT 1 cut(s) 365
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.