RLG00000021204

receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Forward (+)
72924396 .. 72927107
2712 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021204

Sequence Viewer

Length: 603 bp
ATGACAAACGTCGGTGACACAAATGACACAGTTTATGGACTTGTTCAATGCAAGGGAGACCTCTCAAAAAATGATTGCAATACTTGTGCAAACACAGCAGCCTCAAAGATCAGGCAACTATGTATAAGCCAGAAGGAGGCTTCCATTGGCTATGTTAATTGTCCATTACAATATTCCAACCGGCATTTCTTCTCTAATTTTGACAGCTTTCCCAGATTAAATTTACACAATTACAAGACAGCACCTGATTCGGTTCTTTATAATCGTCAGTTGGGTAACTTGGTTAAGAATCTATCTTCAAAAGCTGCATCTGATCCTTCCAGATTTGCCATTGGGTGCACAAGTTACACATATTTCATTGATATATATGGTATGGCTCAGTGCACCCAAGACTTGGCAGAGAACAGCTGCTTAATTTGCCTGCAAGAGATTGCTTTTTATATTCCCCAGGATGGAACAGTTGGGATGGGTTCTGAAAATGTTACATATTTCACCGATCTCCTCAACACACCATCAAGACTTGATGACTCCTTTTTGATCCACAATGATGGGTTCAAGAAAAAAATTATCAATATTGAAAATGAAGTTGAAGATGGAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

201

Amino Acids

22.31

Weight (kDa)

5.13

Isoelectric Point (pI)

36.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Stress-antifung PF01657 3 - 61 3.9e-13 Salt stress response/antifungal
Stress-antifung PF01657 82 - 144 6.3e-07 Salt stress response/antifungal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0018493)

Species Orthologous Gene IDs
malus_domestica MD09G1104200.v1.1 MD17G1091900.v1.1
prunus_persica Prupe.3G221500_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0160201
rosa_laevigata RLG00000021204
rosa_rugosa Rorug02G0482400
rosa_samantha Rh2BG561000 Rh2CG531600 Rh2DG569700
rosa_wichuraiana Rw2G045300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 261
AccB7I CCANNNNNTGG 1 cut(s) 394
AclWI GGATC 2 cut(s) 308, 532
AcsI RAATTY 1 cut(s) 220
AfiI CCNNNNNNNGG 3 cut(s) 136, 394, 452
AgsI TTSAA 5 cut(s) 47, 300, 556, 578, 590
AjnI CCWGG 1 cut(s) 447
AjuI GAANNNNNNNTTGG 2 cut(s) 170, 202
AluBI AGCT 3 cut(s) 207, 305, 408
AluI AGCT 3 cut(s) 207, 305, 408
Alw21I GWGCWC 2 cut(s) 341, 386
Alw26I GTCTC 1 cut(s) 51
Alw44I GTGCAC 2 cut(s) 337, 382
AlwI GGATC 2 cut(s) 308, 532
AlwNI CAGNNNCTG 1 cut(s) 245
ApaLI GTGCAC 2 cut(s) 337, 382
ApeKI GCWGC 3 cut(s) 98, 305, 408
ApoI RAATTY 1 cut(s) 220
AsuHPI GGTGA 2 cut(s) 26, 484
BaeGI GKGCMC 2 cut(s) 341, 386
Bbv12I GWGCWC 2 cut(s) 341, 386
BbvI GCAGC 3 cut(s) 110, 292, 395
BccI CCATC 5 cut(s) 446, 460, 520, 542, 587
BcgI CGANNNNNNTGC 2 cut(s) 231, 265
BciT130I CCWGG 1 cut(s) 449
BcoDI GTCTC 1 cut(s) 51
BisI GCNGC 3 cut(s) 99, 306, 409
BlsI GCNGC 3 cut(s) 100, 307, 410
Bme1390I CCNGG 1 cut(s) 449
BmrFI CCNGG 1 cut(s) 449
BmsI GCATC 1 cut(s) 317
BoxI GACNNNNGTC 1 cut(s) 8
BsaI GGTCTC 1 cut(s) 51
BsaJI CCNNGG 1 cut(s) 447
Bsc4I CCNNNNNNNGG 3 cut(s) 136, 394, 452
Bse118I RCCGGY 1 cut(s) 180
BseBI CCWGG 1 cut(s) 449
BseDI CCNNGG 1 cut(s) 447
BseGI GGATG 2 cut(s) 457, 471
BseLI CCNNNNNNNGG 3 cut(s) 136, 394, 452
BseMII CTCAG 1 cut(s) 392
BseRI GAGGAG 1 cut(s) 491
BseSI GKGCMC 2 cut(s) 341, 386
BseXI GCAGC 3 cut(s) 110, 292, 395
BsiHKAI GWGCWC 2 cut(s) 341, 386
BsiSI CCGG 1 cut(s) 181
BslI CCNNNNNNNGG 3 cut(s) 136, 394, 452
BsmAI GTCTC 1 cut(s) 51
Bso31I GGTCTC 1 cut(s) 51
Bsp1286I GDGCHC 2 cut(s) 341, 386
Bsp143I GATC 4 cut(s) 108, 313, 496, 537
BspCNI CTCAG 1 cut(s) 391
BspPI GGATC 2 cut(s) 308, 532
BspTNI GGTCTC 1 cut(s) 51
BsrFI RCCGGY 1 cut(s) 180
BssAI RCCGGY 1 cut(s) 180
BssECI CCNNGG 1 cut(s) 447
BssMI GATC 4 cut(s) 108, 313, 496, 537
Bst2UI CCWGG 1 cut(s) 449
Bst4CI ACNGT 2 cut(s) 31, 460
BstC8I GCNNGC 1 cut(s) 422
BstDEI CTNAG 1 cut(s) 378
BstF5I GGATG 2 cut(s) 457, 471
BstKTI GATC 4 cut(s) 111, 316, 499, 540
BstMAI GTCTC 1 cut(s) 51
BstMBI GATC 4 cut(s) 108, 313, 496, 537
BstMWI GCNNNNNNNGC 2 cut(s) 95, 417
BstNI CCWGG 1 cut(s) 449
BstPAI GACNNNNGTC 1 cut(s) 8
BstSCI CCNGG 1 cut(s) 447
BstSLI GKGCMC 2 cut(s) 341, 386
BstV1I GCAGC 3 cut(s) 110, 292, 395
BstXI CCANNNNNNTGG 1 cut(s) 548
BtsCI GGATG 2 cut(s) 457, 471
BtsIMutI CAGTG 1 cut(s) 386
Cac8I GCNNGC 1 cut(s) 422
CaiI CAGNNNCTG 1 cut(s) 245
Cfr10I RCCGGY 1 cut(s) 180
CviJI RGCY 8 cut(s) 101, 129, 140, 150, 207, 305, 377, 408
CviKI_1 RGCY 8 cut(s) 101, 129, 140, 150, 207, 305, 377, 408
DdeI CTNAG 1 cut(s) 378
DpnI GATC 4 cut(s) 110, 315, 498, 539
DpnII GATC 4 cut(s) 108, 313, 496, 537
Eco31I GGTCTC 1 cut(s) 51
EcoRII CCWGG 1 cut(s) 447
Fnu4HI GCNGC 3 cut(s) 99, 306, 409
FokI GGATG 2 cut(s) 464, 478
Fsp4HI GCNGC 3 cut(s) 99, 306, 409
GluI GCNGC 3 cut(s) 99, 306, 409
HapII CCGG 1 cut(s) 181
HinfI GANTC 3 cut(s) 248, 289, 527
HpaII CCGG 1 cut(s) 181
HphI GGTGA 2 cut(s) 26, 484
Hpy166II GTNNAC 2 cut(s) 339, 384
Hpy188I TCNGA 2 cut(s) 313, 475
Hpy188III TCNNGA 3 cut(s) 321, 516, 556
Hpy8I GTNNAC 2 cut(s) 339, 384
Hpy99I CGWCG 1 cut(s) 14
HpyAV CCTTC 2 cut(s) 127, 327
HpyCH4III ACNGT 2 cut(s) 31, 460
HpyCH4IV ACGT 1 cut(s) 9
HpyCH4V TGCA 7 cut(s) 51, 78, 89, 308, 339, 384, 424
HpyF10VI GCNNNNNNNGC 2 cut(s) 95, 417
HpyF3I CTNAG 1 cut(s) 378
HpySE526I ACGT 1 cut(s) 9
Kzo9I GATC 4 cut(s) 108, 313, 496, 537
LpnPI CCDG 9 cut(s) 97, 143, 194, 226, 258, 334, 434, 434, 461
Lsp1109I GCAGC 3 cut(s) 110, 292, 395
LweI GCATC 1 cut(s) 317
MaeII ACGT 1 cut(s) 9
MaeIII GTNAC 4 cut(s) 14, 275, 344, 481
MalI GATC 4 cut(s) 110, 315, 498, 539
MboI GATC 4 cut(s) 108, 313, 496, 537
MboII GAAGA 3 cut(s) 181, 288, 602
MhlI GDGCHC 2 cut(s) 341, 386
MluCI AATT 6 cut(s) 157, 196, 220, 229, 414, 564
MlyI GAGTC 1 cut(s) 521
MmeI TCCRAC 1 cut(s) 201
MnlI CCTC 4 cut(s) 71, 112, 130, 512
MseI TTAA 4 cut(s) 156, 218, 285, 413
MslI CAYNNNNRTG 1 cut(s) 546
MspA1I CMGCKG 1 cut(s) 408
MspI CCGG 1 cut(s) 181
MspR9I CCNGG 1 cut(s) 449
MvaI CCWGG 1 cut(s) 449
MwoI GCNNNNNNNGC 2 cut(s) 95, 417
NdeII GATC 4 cut(s) 108, 313, 496, 537
NmuCI GTSAC 1 cut(s) 14
PfeI GAWTC 2 cut(s) 248, 289
PflMI CCANNNNNTGG 1 cut(s) 394
PkrI GCNGC 3 cut(s) 100, 307, 410
PleI GAGTC 1 cut(s) 521
PpsI GAGTC 1 cut(s) 521
PshAI GACNNNNGTC 1 cut(s) 8
PsiI TTATAA 1 cut(s) 261
Psp6I CCWGG 1 cut(s) 447
PspGI CCWGG 1 cut(s) 447
PstNI CAGNNNCTG 1 cut(s) 245
PvuII CAGCTG 1 cut(s) 408
RseI CAYNNNNRTG 1 cut(s) 546
SaqAI TTAA 4 cut(s) 156, 218, 285, 413
SatI GCNGC 3 cut(s) 99, 306, 409
Sau3AI GATC 4 cut(s) 108, 313, 496, 537
SchI GAGTC 1 cut(s) 521
ScrFI CCNGG 1 cut(s) 449
SduI GDGCHC 2 cut(s) 341, 386
SetI ASST 6 cut(s) 12, 63, 209, 247, 307, 410
SfaNI GCATC 1 cut(s) 317
SmiMI CAYNNNNRTG 1 cut(s) 546
Sse9I AATT 6 cut(s) 157, 196, 220, 229, 414, 564
SspI AATATT 2 cut(s) 173, 574
StyD4I CCNGG 1 cut(s) 447
TaaI ACNGT 2 cut(s) 31, 460
TaiI ACGT 1 cut(s) 12
TasI AATT 6 cut(s) 157, 196, 220, 229, 414, 564
TfiI GAWTC 2 cut(s) 248, 289
Tru1I TTAA 4 cut(s) 156, 218, 285, 413
Tru9I TTAA 4 cut(s) 156, 218, 285, 413
TscAI CASTG 1 cut(s) 386
TseFI GTSAC 1 cut(s) 14
TseI GCWGC 3 cut(s) 98, 305, 408
Tsp45I GTSAC 1 cut(s) 14
TspDTI ATGAA 2 cut(s) 346, 597
TspRI CASTG 1 cut(s) 386
Van91I CCANNNNNTGG 1 cut(s) 394
VneI GTGCAC 2 cut(s) 337, 382
XapI RAATTY 1 cut(s) 220
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.