Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0012859

Physical Location & Seq

Genomic Coordinates Reverse (-)

83884354 .. 83885421

Gene Structure 1068 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ53728

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGAACCGGTTAGGACAGCTAAGGCATCCGAATTTGGCACCCCTTTTGGGGTTCTGTGTTGTGGAGGAGGAAAAGCTTCTGGTCTATAAGTACTTGTCGAATGGGACTTTGTATTCTTTGTTACATGGAAGTGGCCCTGGATTGGATTGGCCAACTAGATATAGGATTGGTTTGGGTGCTGCAAGGGGACTTGCTTGGCTTCACCATGGTTGCCAGCCTCCAATCATACACCAAAACATCTGCTCCAATGTGATTCTCCTTGATGAGGATTTTGATGCTAGGATAATGGACTTTGGGTTGGCAAAGCTTATGACGTCTGATTCTCATGATAGCAGTTTCGTTAATGGAGACTTGGGAGAGCTTGGTTATATAGCTCCTGAGTATCCAAGTACTATGGTAGCTTCACTGAAAGGGGACGTTTATGGATTTGGCATAGTACTTCTGGAGTTGGCGACTGGGCAAAAGCCTCTTGAAGTCGGCACTGCTGAAGAAGGTTTTAAGGGTAATGTTGTTGATTGGGTGAATCATCTCTCAAGTTCTGGTCAAAACAAGGATGCCATTGATAAGGATATCTCTGGAAAAGGACACGACGATGAAATTCTACAATTTCTGAAAATTGCTTGTAATTGTGTTGTTTCCCGACCCAAGGATAGGTGGTCTATGTACCAGGTTTACCACTCATTGAAGAGTATGCGCAGAGACCATAGTTTCTCTGAACAAGATGATGAGTTTCCTTTGATTTTTCGCAAGCCAGATAATGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002831 GO:0002832 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0008150 GO:0009507 GO:0009536 GO:0016020 GO:0031347 GO:0031348 GO:0032101 GO:0032102 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0043901 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048583 GO:0048585 GO:0050789 GO:0065007 GO:0071944 GO:0080134 GO:1900150 GO:1900424 GO:1900425

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

254

Amino Acids

28.35

Weight (kDa)

5.44

Isoelectric Point (pI)

27.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	4 - 166	1.4e-26	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	4 - 226	1.3e-22	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012859)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28450
fragaria_vesca	FvH4_6g49690
malus_domestica	MD09G1042400.v1.1 MD17G1043700.v1.1
prunus_persica	Prupe.3G275300_v2.0.a1
pyrus_communis	pycom111g03320
rosa_chinensis	RchiOBHm_Chr2g0169711
rosa_laevigata	RLG00000021896
rosa_multiflora	Rmu_sc0022598.1_g000001 Rmu_ssc0000389.1_g000032 Rmu_ssc0000389.1_g000034
rosa_roxburghii	Rroxscaffold_2G00081850
rosa_rugosa	Rorug02G0542400
rosa_samantha	Rh2AG614800 Rh2BG626900 Rh2CG596400 Rh2DG637800
rosa_wichuraiana	Rw2G050960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	317
Acc16I	TGCGCA	1 cut(s)	695
AccB1I	GGYRCC	1 cut(s)	37
AcoI	YGGCCR	1 cut(s)	149
AcsI	RAATTY	2 cut(s)	31, 597
AcuI	CTGAAG	1 cut(s)	507
AcyI	GRCGYC	1 cut(s)	314
AfaI	GTAC	4 cut(s)	92, 391, 438, 665
AfiI	CCNNNNNNNGG	6 cut(s)	47, 48, 142, 265, 646, 651
AgeI	ACCGGT	1 cut(s)	6
AgsI	TTSAA	2 cut(s)	473, 685
AjnI	CCWGG	2 cut(s)	136, 666
AluBI	AGCT	6 cut(s)	19, 76, 307, 361, 374, 401
AluI	AGCT	6 cut(s)	19, 76, 307, 361, 374, 401
Alw26I	GTCTC	2 cut(s)	342, 693
AoxI	GGCC	2 cut(s)	133, 149
ApeKI	GCWGC	1 cut(s)	179
ApoI	RAATTY	2 cut(s)	31, 597
AsiGI	ACCGGT	1 cut(s)	6
Asp700I	GAANNNNTTC	1 cut(s)	75
AspLEI	GCGC	1 cut(s)	696
AspS9I	GGNCC	1 cut(s)	134
AsuHPI	GGTGA	2 cut(s)	194, 532
BalI	TGGCCA	1 cut(s)	151
BanI	GGYRCC	1 cut(s)	37
BbvI	GCAGC	1 cut(s)	166
BciT130I	CCWGG	2 cut(s)	138, 668
BciVI	GTATCC	1 cut(s)	393
BcoDI	GTCTC	2 cut(s)	342, 693
BfaI	CTAG	2 cut(s)	156, 279
BfuI	GTATCC	1 cut(s)	393
BisI	GCNGC	1 cut(s)	180
BlsI	GCNGC	1 cut(s)	181
BmcAI	AGTACT	3 cut(s)	92, 391, 438
Bme1390I	CCNGG	2 cut(s)	138, 668
BmgT120I	GGNCC	1 cut(s)	134
BmiI	GGNNCC	1 cut(s)	39
BmrFI	CCNGG	2 cut(s)	138, 668
BmrI	ACTGGG	1 cut(s)	465
BmsI	GCATC	3 cut(s)	34, 265, 544
BmuI	ACTGGG	1 cut(s)	465
BpmI	CTGGAG	1 cut(s)	464
Bpu10I	CCTNAGC	1 cut(s)	20
BpuEI	CTTGAG	1 cut(s)	517
BsaHI	GRCGYC	1 cut(s)	314
BsaI	GGTCTC	1 cut(s)	693
BsaJI	CCNNGG	3 cut(s)	136, 205, 645
BsaWI	WCCGGW	1 cut(s)	6
BsaXI	ACNNNNNCTCC	2 cut(s)	227, 257
Bsc4I	CCNNNNNNNGG	6 cut(s)	47, 48, 142, 265, 646, 651
Bse118I	RCCGGY	1 cut(s)	6
Bse1I	ACTGG	1 cut(s)	460
BseBI	CCWGG	2 cut(s)	138, 668
BseDI	CCNNGG	3 cut(s)	136, 205, 645
BseGI	GGATG	2 cut(s)	25, 559
BseLI	CCNNNNNNNGG	6 cut(s)	47, 48, 142, 265, 646, 651
BseMII	CTCAG	1 cut(s)	369
BseNI	ACTGG	1 cut(s)	460
BseRI	GAGGAG	1 cut(s)	80
BseXI	GCAGC	1 cut(s)	166
BshFI	GGCC	2 cut(s)	135, 151
BshNI	GGYRCC	1 cut(s)	37
BshTI	ACCGGT	1 cut(s)	6
BsiSI	CCGG	1 cut(s)	7
BslFI	GGGAC	3 cut(s)	118, 201, 428
BslI	CCNNNNNNNGG	6 cut(s)	47, 48, 142, 265, 646, 651
BsmAI	GTCTC	2 cut(s)	342, 693
BsmFI	GGGAC	3 cut(s)	118, 201, 428
BsnI	GGCC	2 cut(s)	135, 151
Bso31I	GGTCTC	1 cut(s)	693
Bsp19I	CCATGG	1 cut(s)	205
BspANI	GGCC	2 cut(s)	135, 151
BspCNI	CTCAG	1 cut(s)	370
BspHI	TCATGA	1 cut(s)	325
BspLI	GGNNCC	1 cut(s)	39
BspT107I	GGYRCC	1 cut(s)	37
BspTNI	GGTCTC	1 cut(s)	693
BsrFI	RCCGGY	1 cut(s)	6
BsrI	ACTGG	1 cut(s)	460
BssAI	RCCGGY	1 cut(s)	6
BssECI	CCNNGG	3 cut(s)	136, 205, 645
BssNI	GRCGYC	1 cut(s)	314
BssT1I	CCWWGG	2 cut(s)	205, 645
Bst2UI	CCWGG	2 cut(s)	138, 668
Bst6I	CTCTTC	1 cut(s)	680
BstACI	GRCGYC	1 cut(s)	314
BstC8I	GCNNGC	2 cut(s)	215, 749
BstDEI	CTNAG	2 cut(s)	20, 378
BstDSI	CCRYGG	1 cut(s)	205
BstENI	CCTNNNNNAGG	1 cut(s)	263
BstF5I	GGATG	2 cut(s)	25, 559
BstHHI	GCGC	1 cut(s)	696
BstMAI	GTCTC	2 cut(s)	342, 693
BstNI	CCWGG	2 cut(s)	138, 668
BstSCI	CCNGG	2 cut(s)	136, 666
BstV1I	GCAGC	1 cut(s)	166
BsuI	GTATCC	1 cut(s)	393
BsuRI	GGCC	2 cut(s)	135, 151
BtgI	CCRYGG	1 cut(s)	205
BtsCI	GGATG	2 cut(s)	25, 559
BtsI	GCAGTG	1 cut(s)	480
BtsIMutI	CAGTG	2 cut(s)	404, 480
Cac8I	GCNNGC	2 cut(s)	215, 749
CciI	TCATGA	1 cut(s)	325
CfoI	GCGC	1 cut(s)	696
Cfr10I	RCCGGY	1 cut(s)	6
Cfr13I	GGNCC	1 cut(s)	134
CsiI	ACCWGGT	1 cut(s)	666
Csp6I	GTAC	4 cut(s)	91, 390, 437, 664
CspAI	ACCGGT	1 cut(s)	6
CviAII	CATG	3 cut(s)	125, 206, 326
CviQI	GTAC	4 cut(s)	91, 390, 437, 664
DdeI	CTNAG	2 cut(s)	20, 378
EaeI	YGGCCR	1 cut(s)	149
Eam1104I	CTCTTC	1 cut(s)	680
EarI	CTCTTC	1 cut(s)	680
Eco130I	CCWWGG	2 cut(s)	205, 645
Eco31I	GGTCTC	1 cut(s)	693
Eco32I	GATATC	1 cut(s)	571
Eco57I	CTGAAG	1 cut(s)	507
EcoNI	CCTNNNNNAGG	1 cut(s)	263
EcoRII	CCWGG	2 cut(s)	136, 666
EcoRV	GATATC	1 cut(s)	571
EcoT14I	CCWWGG	2 cut(s)	205, 645
ErhI	CCWWGG	2 cut(s)	205, 645
FaeI	CATG	3 cut(s)	128, 209, 329
FaqI	GGGAC	3 cut(s)	118, 201, 428
FatI	CATG	3 cut(s)	124, 205, 325
Fnu4HI	GCNGC	1 cut(s)	180
FokI	GGATG	2 cut(s)	12, 566
Fsp4HI	GCNGC	1 cut(s)	180
FspBI	CTAG	2 cut(s)	156, 279
FspI	TGCGCA	1 cut(s)	695
GlaI	GCGC	1 cut(s)	695
GluI	GCNGC	1 cut(s)	180
GsuI	CTGGAG	1 cut(s)	464
HaeIII	GGCC	2 cut(s)	135, 151
HapII	CCGG	1 cut(s)	7
HhaI	GCGC	1 cut(s)	696
Hin1I	GRCGYC	1 cut(s)	314
Hin1II	CATG	3 cut(s)	128, 209, 329
Hin6I	GCGC	1 cut(s)	694
HinP1I	GCGC	1 cut(s)	694
HindIII	AAGCTT	2 cut(s)	74, 305
HinfI	GANTC	3 cut(s)	253, 320, 523
HpaII	CCGG	1 cut(s)	7
HphI	GGTGA	2 cut(s)	194, 532
Hpy166II	GTNNAC	1 cut(s)	673
Hpy188I	TCNGA	4 cut(s)	30, 319, 612, 715
Hpy188III	TCNNGA	6 cut(s)	326, 377, 443, 470, 576, 639
Hpy8I	GTNNAC	1 cut(s)	673
Hpy99I	CGWCG	1 cut(s)	593
HpyAV	CCTTC	1 cut(s)	485
HpyCH4IV	ACGT	2 cut(s)	314, 417
HpyCH4V	TGCA	1 cut(s)	182
HpyF3I	CTNAG	2 cut(s)	20, 378
HpySE526I	ACGT	2 cut(s)	314, 417
Hsp92I	GRCGYC	1 cut(s)	314
Hsp92II	CATG	3 cut(s)	128, 209, 329
HspAI	GCGC	1 cut(s)	694
LmnI	GCTCC	2 cut(s)	248, 379
Lsp1109I	GCAGC	1 cut(s)	166
LweI	GCATC	3 cut(s)	34, 265, 544
MabI	ACCWGGT	1 cut(s)	666
MaeI	CTAG	2 cut(s)	156, 279
MaeII	ACGT	2 cut(s)	314, 417
MaeIII	GTNAC	1 cut(s)	120
MboII	GAAGA	2 cut(s)	500, 697
MlsI	TGGCCA	1 cut(s)	151
MluCI	AATT	5 cut(s)	31, 597, 605, 615, 625
MluNI	TGGCCA	1 cut(s)	151
MnlI	CCTC	5 cut(s)	58, 61, 228, 259, 477
Mox20I	TGGCCA	1 cut(s)	151
MroXI	GAANNNNTTC	1 cut(s)	75
MscI	TGGCCA	1 cut(s)	151
MseI	TTAA	2 cut(s)	342, 498
MslI	CAYNNNNRTG	2 cut(s)	129, 591
Msp20I	TGGCCA	1 cut(s)	151
MspI	CCGG	1 cut(s)	7
MspR9I	CCNGG	2 cut(s)	138, 668
MvaI	CCWGG	2 cut(s)	138, 668
NcoI	CCATGG	1 cut(s)	205
NlaIII	CATG	3 cut(s)	128, 209, 329
NlaIV	GGNNCC	1 cut(s)	39
NsbI	TGCGCA	1 cut(s)	695
PagI	TCATGA	1 cut(s)	325
PdmI	GAANNNNTTC	1 cut(s)	75
PfeI	GAWTC	3 cut(s)	253, 320, 523
PinAI	ACCGGT	1 cut(s)	6
PkrI	GCNGC	1 cut(s)	181
Psp6I	CCWGG	2 cut(s)	136, 666
PspGI	CCWGG	2 cut(s)	136, 666
PspN4I	GGNNCC	1 cut(s)	39
PspPI	GGNCC	1 cut(s)	134
RsaI	GTAC	4 cut(s)	92, 391, 438, 665
RsaNI	GTAC	4 cut(s)	91, 390, 437, 664
RseI	CAYNNNNRTG	2 cut(s)	129, 591
SaqAI	TTAA	2 cut(s)	342, 498
SatI	GCNGC	1 cut(s)	180
Sau96I	GGNCC	1 cut(s)	134
ScaI	AGTACT	3 cut(s)	92, 391, 438
ScrFI	CCNGG	2 cut(s)	138, 668
SexAI	ACCWGGT	1 cut(s)	666
SfaNI	GCATC	3 cut(s)	34, 265, 544
SmiMI	CAYNNNNRTG	2 cut(s)	129, 591
SmlI	CTYRAG	1 cut(s)	532
SmoI	CTYRAG	1 cut(s)	532
Sse9I	AATT	5 cut(s)	31, 597, 605, 615, 625
SspMI	CTAG	2 cut(s)	156, 279
StyD4I	CCNGG	2 cut(s)	136, 666
StyI	CCWWGG	2 cut(s)	205, 645
TaiI	ACGT	2 cut(s)	317, 420
TaqI	TCGA	1 cut(s)	98
TasI	AATT	5 cut(s)	31, 597, 605, 615, 625
TatI	WGTACW	3 cut(s)	90, 389, 436
TfiI	GAWTC	3 cut(s)	253, 320, 523
Tru1I	TTAA	2 cut(s)	342, 498
Tru9I	TTAA	2 cut(s)	342, 498
TscAI	CASTG	2 cut(s)	411, 487
TseI	GCWGC	1 cut(s)	179
TspDTI	ATGAA	2 cut(s)	17, 609
TspRI	CASTG	2 cut(s)	411, 487
XagI	CCTNNNNNAGG	1 cut(s)	263
XapI	RAATTY	2 cut(s)	31, 597
XmnI	GAANNNNTTC	1 cut(s)	75
XspI	CTAG	2 cut(s)	156, 279
ZraI	GACGTC	1 cut(s)	315
ZrmI	AGTACT	3 cut(s)	92, 391, 438

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.