RchiOBHm_Chr2g0172711

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Forward (+)
85995881 .. 85996740
860 bp
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UTR
Exon/CDS
Intron
PRQ53998

Sequence Viewer

Length: 195 bp
ATGGTCCCAAATTGGCAAGGTGATAAAAGGACAAGGTGTATGGAGATATTTGAATTTCAAGTGATGGGAGATTCTCACCACCATGGTCCTCCTTTGCTGGAGAAAAGACCCTCCATGAGTGGCGGCTCGCAGGAAAATTTCGCCGGAAAAGTCGATTTGCAATTTTCTTCCAATCTCCGTGTCTTCTTCCCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

64

Amino Acids

7.34

Weight (kDa)

6.82

Isoelectric Point (pI)

57.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 123
AcsI RAATTY 2 cut(s) 53, 136
AgsI TTSAA 2 cut(s) 53, 59
ApoI RAATTY 2 cut(s) 53, 136
AspS9I GGNCC 2 cut(s) 4, 86
AsuHPI GGTGA 2 cut(s) 32, 68
AvaII GGWCC 2 cut(s) 4, 86
BbsI GAAGAC 1 cut(s) 175
BccI CCATC 1 cut(s) 58
BfaI CTAG 1 cut(s) 193
BisI GCNGC 1 cut(s) 124
BlsI GCNGC 1 cut(s) 125
Bme18I GGWCC 2 cut(s) 4, 86
BmgT120I GGNCC 2 cut(s) 4, 86
BmiI GGNNCC 1 cut(s) 6
BpiI GAAGAC 1 cut(s) 175
BpmI CTGGAG 1 cut(s) 119
BsaJI CCNNGG 1 cut(s) 82
BseDI CCNNGG 1 cut(s) 82
BsiSI CCGG 1 cut(s) 144
Bsp19I CCATGG 1 cut(s) 82
BspACI CCGC 1 cut(s) 123
BspLI GGNNCC 1 cut(s) 6
BssECI CCNNGG 1 cut(s) 82
BssT1I CCWWGG 1 cut(s) 82
BstC8I GCNNGC 1 cut(s) 128
BstDSI CCRYGG 1 cut(s) 82
BstV2I GAAGAC 1 cut(s) 175
BtgI CCRYGG 1 cut(s) 82
Cac8I GCNNGC 1 cut(s) 128
Cfr13I GGNCC 2 cut(s) 4, 86
CviAII CATG 2 cut(s) 83, 115
CviJI RGCY 1 cut(s) 126
CviKI_1 RGCY 1 cut(s) 126
Eco130I CCWWGG 1 cut(s) 82
Eco47I GGWCC 2 cut(s) 4, 86
EcoT14I CCWWGG 1 cut(s) 82
ErhI CCWWGG 1 cut(s) 82
FaeI CATG 2 cut(s) 86, 118
FaiI YATR 3 cut(s) 41, 84, 116
FatI CATG 2 cut(s) 82, 114
Fnu4HI GCNGC 1 cut(s) 124
Fsp4HI GCNGC 1 cut(s) 124
FspBI CTAG 1 cut(s) 193
GluI GCNGC 1 cut(s) 124
GsuI CTGGAG 1 cut(s) 119
HapII CCGG 1 cut(s) 144
Hin1II CATG 2 cut(s) 86, 118
HinfI GANTC 1 cut(s) 71
HpaII CCGG 1 cut(s) 144
HphI GGTGA 2 cut(s) 32, 68
HpyCH4V TGCA 1 cut(s) 160
Hsp92II CATG 2 cut(s) 86, 118
LpnPI CCDG 3 cut(s) 83, 116, 157
MaeI CTAG 1 cut(s) 193
MboII GAAGA 3 cut(s) 159, 175, 178
MluCI AATT 4 cut(s) 10, 53, 136, 161
MnlI CCTC 2 cut(s) 99, 121
MslI CAYNNNNRTG 1 cut(s) 81
MspI CCGG 1 cut(s) 144
NcoI CCATGG 1 cut(s) 82
NlaIII CATG 2 cut(s) 86, 118
NlaIV GGNNCC 1 cut(s) 6
PfeI GAWTC 1 cut(s) 71
PkrI GCNGC 1 cut(s) 125
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 2 cut(s) 4, 86
RseI CAYNNNNRTG 1 cut(s) 81
SatI GCNGC 1 cut(s) 124
Sau96I GGNCC 2 cut(s) 4, 86
SetI ASST 2 cut(s) 22, 38
SinI GGWCC 2 cut(s) 4, 86
SmiMI CAYNNNNRTG 1 cut(s) 81
Sse9I AATT 4 cut(s) 10, 53, 136, 161
SsiI CCGC 1 cut(s) 123
SspMI CTAG 1 cut(s) 193
StyI CCWWGG 1 cut(s) 82
TaqI TCGA 1 cut(s) 153
TasI AATT 4 cut(s) 10, 53, 136, 161
TauI GCSGC 1 cut(s) 126
TfiI GAWTC 1 cut(s) 71
TspGWI ACGGA 1 cut(s) 167
VpaK11BI GGWCC 2 cut(s) 4, 86
XapI RAATTY 2 cut(s) 53, 136
XspI CTAG 1 cut(s) 193
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.