Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0019354

Physical Location & Seq

Genomic Coordinates Forward (+)

3602532 .. 3602906

Gene Structure 375 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG045600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGAATTTCTTCGAACAACCAAAAACATCAAACTCAGCTCTTGATGACATCTGTTGCGCTAGTGAAAGAGTCCTTGTTGGAGGTCTGCTTTCGTTCATGCTTCGGGAGCACGAAACCTTTTGTACAAGCAGGGATGATGAGGTATCCATCCCACCTATTATGACTTCAGACATTATTTTGAAGAATCGTGGAGCCAAGTTCCTATTGGAAGAAGATTTTGTGAAAGAGTATCCGACGTTGTTTGAAGACCTCCAACTTATGAAGAAGCTGAAGAAAAAAGCGAATCTTGAAGCTTTGGATAAGTTGGGGCGCACTTGCTTGGCCAAGCGCTATTTGCCATATAAGTTGAAGTACTTTTCGACCGCTGTCGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000706 GO:0000729 GO:0001708 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0003916 GO:0003918 GO:0004518 GO:0004519 GO:0004520 GO:0004536 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008094 GO:0008150 GO:0008152 GO:0008544 GO:0009888 GO:0009913 GO:0009957 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016788 GO:0016817 GO:0016818 GO:0016853 GO:0016887 GO:0016889 GO:0016894 GO:0017111 GO:0022402 GO:0022414 GO:0030154 GO:0030855 GO:0031974 GO:0031981 GO:0032502 GO:0033554 GO:0034641 GO:0035825 GO:0042138 GO:0042623 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045165 GO:0046483 GO:0048285 GO:0048856 GO:0048869 GO:0050896 GO:0051321 GO:0051716 GO:0060429 GO:0061505 GO:0061982 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko04113 map04113

Pfam Domains

Protein Families

TP6A_N

Protein Analysis

124

Amino Acids

14.28

Weight (kDa)

6.59

Isoelectric Point (pI)

28.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TOP6A-Spo11_Toprim	PF21180	62 - 116	1.5e-07	Topoisomerase 6 subunit A/Spo11, Toprim domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0019354)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0172711 RchiOBHm_Chr4g0418391 RchiOBHm_Chr7g0182931
rosa_multiflora	Rmu_sc0000774.1_g000001 Rmu_sc0003382.1_g000005 Rmu_sc0006269.1_g000016
rosa_roxburghii	Rroxscaffold_2G00152030
rosa_samantha	Rh2CG045600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	369
AciI	CCGC	1 cut(s)	363
AcoI	YGGCCR	1 cut(s)	321
AcsI	RAATTY	1 cut(s)	4
AcuI	CTGAAG	2 cut(s)	150, 290
AfaI	GTAC	2 cut(s)	124, 353
AfeI	AGCGCT	1 cut(s)	329
AgsI	TTSAA	4 cut(s)	181, 245, 290, 349
AluBI	AGCT	3 cut(s)	38, 268, 293
AluI	AGCT	3 cut(s)	38, 268, 293
Alw21I	GWGCWC	1 cut(s)	111
Aor51HI	AGCGCT	1 cut(s)	329
AoxI	GGCC	1 cut(s)	321
ApoI	RAATTY	1 cut(s)	4
Asp700I	GAANNNNTTC	1 cut(s)	8
AspLEI	GCGC	3 cut(s)	59, 312, 330
AsuII	TTCGAA	1 cut(s)	12
BalI	TGGCCA	1 cut(s)	323
BbsI	GAAGAC	1 cut(s)	252
Bbv12I	GWGCWC	1 cut(s)	111
BccI	CCATC	1 cut(s)	155
BciVI	GTATCC	2 cut(s)	154, 240
BfaI	CTAG	1 cut(s)	60
BfoI	RGCGCY	1 cut(s)	331
BfuI	GTATCC	2 cut(s)	154, 240
BmcAI	AGTACT	1 cut(s)	353
BmiI	GGNNCC	1 cut(s)	193
BoxI	GACNNNNGTC	1 cut(s)	365
BpiI	GAAGAC	1 cut(s)	252
Bpu14I	TTCGAA	1 cut(s)	12
BseGI	GGATG	2 cut(s)	139, 147
BseMII	CTCAG	1 cut(s)	48
Bsh1285I	CGRYCG	1 cut(s)	363
BshFI	GGCC	1 cut(s)	323
BsiEI	CGRYCG	1 cut(s)	363
BsiHKAI	GWGCWC	1 cut(s)	111
BsnI	GGCC	1 cut(s)	323
Bsp119I	TTCGAA	1 cut(s)	12
Bsp1286I	GDGCHC	1 cut(s)	111
Bsp1407I	TGTACA	1 cut(s)	122
BspACI	CCGC	1 cut(s)	363
BspANI	GGCC	1 cut(s)	323
BspCNI	CTCAG	1 cut(s)	47
BspLI	GGNNCC	1 cut(s)	193
BspT104I	TTCGAA	1 cut(s)	12
BsrGI	TGTACA	1 cut(s)	122
BstAUI	TGTACA	1 cut(s)	122
BstBI	TTCGAA	1 cut(s)	12
BstDEI	CTNAG	1 cut(s)	34
BstF5I	GGATG	2 cut(s)	139, 147
BstH2I	RGCGCY	1 cut(s)	331
BstHHI	GCGC	3 cut(s)	59, 312, 330
BstMCI	CGRYCG	1 cut(s)	363
BstMWI	GCNNNNNNNGC	2 cut(s)	106, 334
BstPAI	GACNNNNGTC	1 cut(s)	365
BstV2I	GAAGAC	1 cut(s)	252
BsuI	GTATCC	2 cut(s)	154, 240
BsuRI	GGCC	1 cut(s)	323
BtsCI	GGATG	2 cut(s)	139, 147
CfoI	GCGC	3 cut(s)	59, 312, 330
Csp6I	GTAC	2 cut(s)	123, 352
CviAII	CATG	1 cut(s)	97
CviJI	RGCY	5 cut(s)	38, 194, 268, 293, 323
CviKI_1	RGCY	5 cut(s)	38, 194, 268, 293, 323
CviQI	GTAC	2 cut(s)	123, 352
DdeI	CTNAG	1 cut(s)	34
EaeI	YGGCCR	1 cut(s)	321
Eco47III	AGCGCT	1 cut(s)	329
Eco57I	CTGAAG	2 cut(s)	150, 290
FaeI	CATG	1 cut(s)	100
FaiI	YATR	5 cut(s)	98, 161, 260, 340, 342
FalI	AAGNNNNNCTT	2 cut(s)	270, 302
FatI	CATG	1 cut(s)	96
FblI	GTMKAC	1 cut(s)	369
FokI	GGATG	2 cut(s)	134, 146
FspBI	CTAG	1 cut(s)	60
GlaI	GCGC	3 cut(s)	58, 311, 329
HaeII	RGCGCY	1 cut(s)	331
HaeIII	GGCC	1 cut(s)	323
HhaI	GCGC	3 cut(s)	59, 312, 330
Hin1II	CATG	1 cut(s)	100
Hin6I	GCGC	3 cut(s)	57, 310, 328
HinP1I	GCGC	3 cut(s)	57, 310, 328
HincII	GTYRAC	1 cut(s)	370
HindII	GTYRAC	1 cut(s)	370
HindIII	AAGCTT	1 cut(s)	291
HinfI	GANTC	3 cut(s)	69, 184, 283
Hpy166II	GTNNAC	1 cut(s)	370
Hpy188I	TCNGA	2 cut(s)	169, 234
Hpy188III	TCNNGA	3 cut(s)	41, 104, 287
Hpy8I	GTNNAC	1 cut(s)	370
Hpy99I	CGWCG	1 cut(s)	238
HpyCH4IV	ACGT	1 cut(s)	236
HpyF10VI	GCNNNNNNNGC	2 cut(s)	106, 334
HpyF3I	CTNAG	1 cut(s)	34
HpySE526I	ACGT	1 cut(s)	236
Hsp92II	CATG	1 cut(s)	100
HspAI	GCGC	3 cut(s)	57, 310, 328
LmnI	GCTCC	2 cut(s)	106, 191
LpnPI	CCDG	1 cut(s)	115
MaeI	CTAG	1 cut(s)	60
MaeII	ACGT	1 cut(s)	236
MboII	GAAGA	6 cut(s)	193, 221, 224, 257, 274, 283
MhlI	GDGCHC	1 cut(s)	111
MlsI	TGGCCA	1 cut(s)	323
MluCI	AATT	1 cut(s)	4
MluNI	TGGCCA	1 cut(s)	323
MlyI	GAGTC	1 cut(s)	78
MmeI	TCCRAC	3 cut(s)	58, 257, 277
MnlI	CCTC	3 cut(s)	74, 133, 260
Mox20I	TGGCCA	1 cut(s)	323
MroXI	GAANNNNTTC	1 cut(s)	8
MscI	TGGCCA	1 cut(s)	323
Msp20I	TGGCCA	1 cut(s)	323
MspA1I	CMGCKG	1 cut(s)	365
MwoI	GCNNNNNNNGC	2 cut(s)	106, 334
NlaIII	CATG	1 cut(s)	100
NlaIV	GGNNCC	1 cut(s)	193
NspV	TTCGAA	1 cut(s)	12
PdmI	GAANNNNTTC	1 cut(s)	8
PfeI	GAWTC	2 cut(s)	184, 283
PleI	GAGTC	1 cut(s)	77
PpsI	GAGTC	1 cut(s)	77
PshAI	GACNNNNGTC	1 cut(s)	365
PspN4I	GGNNCC	1 cut(s)	193
RsaI	GTAC	2 cut(s)	124, 353
RsaNI	GTAC	2 cut(s)	123, 352
SalI	GTCGAC	1 cut(s)	368
ScaI	AGTACT	1 cut(s)	353
SchI	GAGTC	1 cut(s)	78
SduI	GDGCHC	1 cut(s)	111
SetI	ASST	9 cut(s)	40, 85, 119, 144, 157, 239, 252, 270, 295
SfuI	TTCGAA	1 cut(s)	12
Sse9I	AATT	1 cut(s)	4
SsiI	CCGC	1 cut(s)	363
SspMI	CTAG	1 cut(s)	60
TaiI	ACGT	1 cut(s)	239
TaqI	TCGA	3 cut(s)	12, 359, 369
TasI	AATT	1 cut(s)	4
TatI	WGTACW	2 cut(s)	122, 351
TfiI	GAWTC	2 cut(s)	184, 283
TspDTI	ATGAA	3 cut(s)	17, 85, 275
XapI	RAATTY	1 cut(s)	4
XcmI	CCANNNNNNNNNTGG	1 cut(s)	202
XmiI	GTMKAC	1 cut(s)	369
XmnI	GAANNNNTTC	1 cut(s)	8
XspI	CTAG	1 cut(s)	60
ZrmI	AGTACT	1 cut(s)	353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.