Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000774.1

Orthogroup ID

OG0019354

Physical Location & Seq

Genomic Coordinates Reverse (-)

791 .. 1548

Gene Structure 758 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000774.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

atggtcccaaattggcaaggtgataaaatgacaaagtgtagggagatatttgaatttcaagtgatgggagattctcaccaccatggtcctcctttgatggagaaaagaccctccatgagtggcagctcgccggaaaatgctgctgcaaattctcccaactgctcggtggaggtggcagaagccaatgcaatcctcttggggatcattatggccactgatcacaacctgagaaagattcaagtgcaatctgactctttagagatcatttcagagttaaattctaaccaaccttgcaacaattggaaaacctcccacatcattgaagaaattaggtggagaagtaccttctttgatcatgtctccagcagatggattccccgtgaagcaaatcagacagccttgcttggaaatcggtcggtgagtcttaatagatgggccaacaggccaccaccatccctctctcttgtgctacgaaacgatggtctgccttgtcctccagtttctgctatttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_3 zf-RVT

Protein Analysis

170

Amino Acids

19.02

Weight (kDa)

6.58

Isoelectric Point (pI)

71.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019354)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0172711 RchiOBHm_Chr4g0418391 RchiOBHm_Chr7g0182931
rosa_multiflora	Rmu_sc0000774.1_g000001 Rmu_sc0003382.1_g000005 Rmu_sc0006269.1_g000016
rosa_roxburghii	Rroxscaffold_2G00152030
rosa_samantha	Rh2CG045600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	369
AclWI	GGATC	1 cut(s)	209
AcoI	YGGCCR	1 cut(s)	210
AcsI	RAATTY	3 cut(s)	53, 148, 277
AfaI	GTAC	1 cut(s)	343
AfiI	CCNNNNNNNGG	1 cut(s)	369
AgsI	TTSAA	4 cut(s)	53, 59, 239, 323
AluBI	AGCT	1 cut(s)	126
AluI	AGCT	1 cut(s)	126
Alw26I	GTCTC	1 cut(s)	364
AlwI	GGATC	1 cut(s)	209
AlwNI	CAGNNNCTG	1 cut(s)	503
AoxI	GGCC	3 cut(s)	210, 435, 443
ApeKI	GCWGC	3 cut(s)	123, 140, 143
ApoI	RAATTY	3 cut(s)	53, 148, 277
ArsI	GACNNNNNNTTYG	2 cut(s)	466, 498
AspS9I	GGNCC	3 cut(s)	4, 86, 435
AsuHPI	GGTGA	3 cut(s)	32, 68, 430
AvaII	GGWCC	2 cut(s)	4, 86
BalI	TGGCCA	1 cut(s)	212
BbvI	GCAGC	3 cut(s)	127, 130, 135
BccI	CCATC	6 cut(s)	58, 91, 363, 426, 460, 473
BclI	TGATCA	2 cut(s)	217, 352
BcoDI	GTCTC	1 cut(s)	364
BisI	GCNGC	3 cut(s)	124, 141, 144
BlsI	GCNGC	3 cut(s)	125, 142, 145
Bme18I	GGWCC	2 cut(s)	4, 86
BmgT120I	GGNCC	3 cut(s)	4, 86, 435
BmiI	GGNNCC	1 cut(s)	6
BpmI	CTGGAG	2 cut(s)	346, 480
BsaJI	CCNNGG	1 cut(s)	82
Bsc4I	CCNNNNNNNGG	1 cut(s)	369
Bse1I	ACTGG	1 cut(s)	497
BseDI	CCNNGG	1 cut(s)	82
BseGI	GGATG	1 cut(s)	452
BseLI	CCNNNNNNNGG	1 cut(s)	369
BseMII	CTCAG	1 cut(s)	218
BseNI	ACTGG	1 cut(s)	497
BseXI	GCAGC	3 cut(s)	127, 130, 135
Bsh1285I	CGRYCG	1 cut(s)	416
BshFI	GGCC	3 cut(s)	212, 437, 445
BsiEI	CGRYCG	1 cut(s)	416
BsiSI	CCGG	1 cut(s)	131
BslI	CCNNNNNNNGG	1 cut(s)	369
BsmAI	GTCTC	1 cut(s)	364
BsnI	GGCC	3 cut(s)	212, 437, 445
Bsp143I	GATC	4 cut(s)	201, 217, 261, 352
Bsp19I	CCATGG	1 cut(s)	82
BspANI	GGCC	3 cut(s)	212, 437, 445
BspCNI	CTCAG	1 cut(s)	219
BspLI	GGNNCC	1 cut(s)	6
BspPI	GGATC	1 cut(s)	209
BsrI	ACTGG	1 cut(s)	497
BssECI	CCNNGG	1 cut(s)	82
BssMI	GATC	4 cut(s)	201, 217, 261, 352
BssT1I	CCWWGG	1 cut(s)	82
BstC8I	GCNNGC	1 cut(s)	128
BstDEI	CTNAG	1 cut(s)	227
BstDSI	CCRYGG	1 cut(s)	82
BstF5I	GGATG	1 cut(s)	452
BstKTI	GATC	4 cut(s)	204, 220, 264, 355
BstMAI	GTCTC	1 cut(s)	364
BstMBI	GATC	4 cut(s)	201, 217, 261, 352
BstMCI	CGRYCG	1 cut(s)	416
BstV1I	GCAGC	3 cut(s)	127, 130, 135
BsuRI	GGCC	3 cut(s)	212, 437, 445
BtgI	CCRYGG	1 cut(s)	82
BtsCI	GGATG	1 cut(s)	452
BtsIMutI	CAGTG	1 cut(s)	213
Cac8I	GCNNGC	1 cut(s)	128
CaiI	CAGNNNCTG	1 cut(s)	503
Cfr13I	GGNCC	3 cut(s)	4, 86, 435
Csp6I	GTAC	1 cut(s)	342
CviAII	CATG	3 cut(s)	83, 115, 356
CviJI	RGCY	6 cut(s)	126, 182, 212, 398, 437, 445
CviKI_1	RGCY	6 cut(s)	126, 182, 212, 398, 437, 445
CviQI	GTAC	1 cut(s)	342
DdeI	CTNAG	1 cut(s)	227
DpnI	GATC	4 cut(s)	203, 219, 263, 354
DpnII	GATC	4 cut(s)	201, 217, 261, 352
EaeI	YGGCCR	1 cut(s)	210
Eco130I	CCWWGG	1 cut(s)	82
Eco47I	GGWCC	2 cut(s)	4, 86
EcoT14I	CCWWGG	1 cut(s)	82
ErhI	CCWWGG	1 cut(s)	82
FaeI	CATG	3 cut(s)	86, 118, 359
FaiI	YATR	4 cut(s)	84, 116, 209, 357
FatI	CATG	3 cut(s)	82, 114, 355
FbaI	TGATCA	2 cut(s)	217, 352
Fnu4HI	GCNGC	3 cut(s)	124, 141, 144
FokI	GGATG	1 cut(s)	439
Fsp4HI	GCNGC	3 cut(s)	124, 141, 144
GluI	GCNGC	3 cut(s)	124, 141, 144
GsuI	CTGGAG	2 cut(s)	346, 480
HaeIII	GGCC	3 cut(s)	212, 437, 445
HapII	CCGG	1 cut(s)	131
Hin1II	CATG	3 cut(s)	86, 118, 359
HinfI	GANTC	5 cut(s)	71, 235, 251, 373, 421
HpaII	CCGG	1 cut(s)	131
HphI	GGTGA	3 cut(s)	32, 68, 430
Hpy188I	TCNGA	3 cut(s)	250, 271, 393
HpyAV	CCTTC	1 cut(s)	355
HpyCH4V	TGCA	4 cut(s)	146, 188, 244, 294
HpyF3I	CTNAG	1 cut(s)	227
Hsp92II	CATG	3 cut(s)	86, 118, 359
Ksp22I	TGATCA	2 cut(s)	217, 352
Kzo9I	GATC	4 cut(s)	201, 217, 261, 352
LpnPI	CCDG	4 cut(s)	144, 239, 376, 427
Lsp1109I	GCAGC	3 cut(s)	127, 130, 135
MalI	GATC	4 cut(s)	203, 219, 263, 354
MboI	GATC	4 cut(s)	201, 217, 261, 352
MboII	GAAGA	1 cut(s)	335
MfeI	CAATTG	1 cut(s)	298
MlsI	TGGCCA	1 cut(s)	212
MluCI	AATT	6 cut(s)	10, 53, 148, 277, 298, 327
MluNI	TGGCCA	1 cut(s)	212
MlyI	GAGTC	2 cut(s)	245, 430
MnlI	CCTC	7 cut(s)	99, 121, 163, 203, 319, 467, 504
Mox20I	TGGCCA	1 cut(s)	212
MscI	TGGCCA	1 cut(s)	212
MseI	TTAA	3 cut(s)	275, 426, 511
MslI	CAYNNNNRTG	1 cut(s)	81
Msp20I	TGGCCA	1 cut(s)	212
MspI	CCGG	1 cut(s)	131
MunI	CAATTG	1 cut(s)	298
NcoI	CCATGG	1 cut(s)	82
NdeII	GATC	4 cut(s)	201, 217, 261, 352
NlaIII	CATG	3 cut(s)	86, 118, 359
NlaIV	GGNNCC	1 cut(s)	6
PfeI	GAWTC	3 cut(s)	71, 235, 373
PflMI	CCANNNNNTGG	1 cut(s)	369
PkrI	GCNGC	3 cut(s)	125, 142, 145
PleI	GAGTC	2 cut(s)	245, 429
PpsI	GAGTC	2 cut(s)	245, 429
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	3 cut(s)	4, 86, 435
PstNI	CAGNNNCTG	1 cut(s)	503
RsaI	GTAC	1 cut(s)	343
RsaNI	GTAC	1 cut(s)	342
RseI	CAYNNNNRTG	1 cut(s)	81
SaqAI	TTAA	3 cut(s)	275, 426, 511
SatI	GCNGC	3 cut(s)	124, 141, 144
Sau3AI	GATC	4 cut(s)	201, 217, 261, 352
Sau96I	GGNCC	3 cut(s)	4, 86, 435
SchI	GAGTC	2 cut(s)	245, 430
SetI	ASST	8 cut(s)	22, 128, 174, 228, 292, 311, 335, 347
SinI	GGWCC	2 cut(s)	4, 86
SmiMI	CAYNNNNRTG	1 cut(s)	81
Sse9I	AATT	6 cut(s)	10, 53, 148, 277, 298, 327
StyI	CCWWGG	1 cut(s)	82
TaqII	GACCGA	1 cut(s)	402
TasI	AATT	6 cut(s)	10, 53, 148, 277, 298, 327
TfiI	GAWTC	3 cut(s)	71, 235, 373
Tru1I	TTAA	3 cut(s)	275, 426, 511
Tru9I	TTAA	3 cut(s)	275, 426, 511
TscAI	CASTG	1 cut(s)	220
TseI	GCWGC	3 cut(s)	123, 140, 143
TspRI	CASTG	1 cut(s)	220
Van91I	CCANNNNNTGG	1 cut(s)	369
VpaK11BI	GGWCC	2 cut(s)	4, 86
XapI	RAATTY	3 cut(s)	53, 148, 277
XcmI	CCANNNNNNNNNTGG	1 cut(s)	163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.