Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006269.1

Orthogroup ID

OG0019354

Physical Location & Seq

Genomic Coordinates Reverse (-)

67807 .. 70471

Gene Structure 2665 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006269.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

atggtcagcaagatcggactatgtgactcgactcgttccgggggatctcgagcctctcgtcatcgccgtcgaagacctcgacgtgcagcaacagattcatttcatccggtcatcatccaggctccaccagtttgggctgaaagacaagggtggctttaccaatatggacgacgggaacattccgggcccaactacccaaaccttagcgctcccaattcttctaccatagacggtgtagctggcctaggctacttcgatttggccaaggaggagattgccaaggctgttagggctaaagaatggggcttaagatcggagtcgacaacacagttaagattagtttctgcacttcttactcttacaaatgaaaccgctcggattctggttgagttcttggaggtggcaatcacatcaattgttttcctcaaaggaatttatcctacaggtgcttttgagagaaggaactatatgaatttggttgttcatagagctcggcaccctgagctcagagattatttccattctgctatctcaggacttcttccttttataaaaaagtcacctccttctccttgctccaagctcttgatgttggtaagaatagtgaaatttgagatctctaagatgagttgtggtgttaaatggtgtgtcatctttggtccccaagtgtgcaagagatgctcttacaccattgtcccccaaatggtcccaaattggcaaggtgataaaaggacaaggtgtagggagatatttgaatttcaagtgatgggagattctcaccaccatggtcctcctttgctggagaaaagaccctccatgagtggcggctcgccggaaaagtttgccggaaaaatcgccggaaaagtagatttgcaattttcttccaatctccgtgtcttcttcccctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006950 GO:0006974 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010224 GO:0033554 GO:0050896 GO:0051716

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 ko04914 ko05100 ko05131 ko05166 map04110 map04111 map04113 map04114 map04914 map05100 map05131 map05166

Pfam Domains

Protein Families

HORMA

Protein Analysis

302

Amino Acids

34.07

Weight (kDa)

10.05

Isoelectric Point (pI)

58.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019354)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0172711 RchiOBHm_Chr4g0418391 RchiOBHm_Chr7g0182931
rosa_multiflora	Rmu_sc0000774.1_g000001 Rmu_sc0003382.1_g000005 Rmu_sc0006269.1_g000016
rosa_roxburghii	Rroxscaffold_2G00152030
rosa_samantha	Rh2CG045600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	551
AccB1I	GGYRCC	1 cut(s)	495
AccBSI	CCGCTC	1 cut(s)	374
AccI	GTMKAC	1 cut(s)	320
AciI	CCGC	2 cut(s)	372, 825
AclWI	GGATC	1 cut(s)	52
AcoI	YGGCCR	1 cut(s)	261
AcsI	RAATTY	4 cut(s)	432, 472, 608, 755
AfeI	AGCGCT	1 cut(s)	208
AfiI	CCNNNNNNNGG	1 cut(s)	703
AflII	CTTAAG	1 cut(s)	307
AgsI	TTSAA	2 cut(s)	755, 761
AjiI	CACGTC	1 cut(s)	83
AjnI	CCWGG	1 cut(s)	117
AluBI	AGCT	4 cut(s)	239, 491, 505, 583
AluI	AGCT	4 cut(s)	239, 491, 505, 583
Alw21I	GWGCWC	2 cut(s)	493, 507
AlwI	GGATC	1 cut(s)	52
Ama87I	CYCGRG	1 cut(s)	48
Aor51HI	AGCGCT	1 cut(s)	208
AoxI	GGCC	3 cut(s)	185, 241, 261
ApaI	GGGCCC	1 cut(s)	189
ApeKI	GCWGC	1 cut(s)	86
ApoI	RAATTY	4 cut(s)	432, 472, 608, 755
AspA2I	CCTAGG	1 cut(s)	244
AspLEI	GCGC	1 cut(s)	209
AspS9I	GGNCC	5 cut(s)	185, 186, 659, 706, 788
AsuC2I	CCSGG	2 cut(s)	40, 184
AsuHPI	GGTGA	3 cut(s)	552, 734, 770
AvaI	CYCGRG	1 cut(s)	48
AvaII	GGWCC	3 cut(s)	659, 706, 788
AvrII	CCTAGG	1 cut(s)	244
BaeGI	GKGCMC	1 cut(s)	189
BalI	TGGCCA	1 cut(s)	263
BanI	GGYRCC	1 cut(s)	495
BanII	GRGCYC	3 cut(s)	189, 493, 507
BbsI	GAAGAC	2 cut(s)	79, 889
Bbv12I	GWGCWC	2 cut(s)	493, 507
BbvI	GCAGC	1 cut(s)	98
BccI	CCATC	1 cut(s)	760
BceAI	ACGGC	1 cut(s)	51
BciT130I	CCWGG	1 cut(s)	119
BcnI	CCSGG	2 cut(s)	40, 184
BfaI	CTAG	2 cut(s)	245, 907
BfmI	CTRYAG	1 cut(s)	441
BfoI	RGCGCY	1 cut(s)	210
BfrI	CTTAAG	1 cut(s)	307
BglII	AGATCT	1 cut(s)	615
BisI	GCNGC	2 cut(s)	87, 826
BlnI	CCTAGG	1 cut(s)	244
BlsI	GCNGC	2 cut(s)	88, 827
Bme1390I	CCNGG	3 cut(s)	40, 119, 184
Bme18I	GGWCC	3 cut(s)	659, 706, 788
BmeT110I	CYCGRG	1 cut(s)	48
BmgBI	CACGTC	1 cut(s)	83
BmgT120I	GGNCC	5 cut(s)	185, 186, 659, 706, 788
BmiI	GGNNCC	5 cut(s)	123, 187, 497, 661, 708
BmrFI	CCNGG	3 cut(s)	40, 119, 184
BmsI	GCATC	1 cut(s)	668
BpiI	GAAGAC	2 cut(s)	79, 889
BpmI	CTGGAG	1 cut(s)	821
Bpu10I	CCTNAGC	2 cut(s)	203, 501
BpuMI	CCSGG	2 cut(s)	40, 184
BsaJI	CCNNGG	5 cut(s)	39, 244, 264, 279, 784
BsaWI	WCCGGW	1 cut(s)	106
Bsc4I	CCNNNNNNNGG	1 cut(s)	703
Bse1I	ACTGG	1 cut(s)	128
BseBI	CCWGG	1 cut(s)	119
BseDI	CCNNGG	5 cut(s)	39, 244, 264, 279, 784
BseGI	GGATG	2 cut(s)	103, 114
BseLI	CCNNNNNNNGG	1 cut(s)	703
BseMII	CTCAG	3 cut(s)	492, 520, 546
BseNI	ACTGG	1 cut(s)	128
BseRI	GAGGAG	1 cut(s)	284
BseSI	GKGCMC	1 cut(s)	189
BseXI	GCAGC	1 cut(s)	98
BsgI	GTGCAG	2 cut(s)	105, 330
BshFI	GGCC	3 cut(s)	187, 243, 263
BshNI	GGYRCC	1 cut(s)	495
BsiHKAI	GWGCWC	2 cut(s)	493, 507
BsiHKCI	CYCGRG	1 cut(s)	48
BsiSI	CCGG	6 cut(s)	39, 107, 183, 833, 846, 858
BslFI	GGGAC	3 cut(s)	645, 680, 692
BslI	CCNNNNNNNGG	1 cut(s)	703
BsmFI	GGGAC	3 cut(s)	645, 680, 692
BsnI	GGCC	3 cut(s)	187, 243, 263
BsoBI	CYCGRG	1 cut(s)	48
Bsp120I	GGGCCC	1 cut(s)	185
Bsp1286I	GDGCHC	3 cut(s)	189, 493, 507
Bsp143I	GATC	4 cut(s)	12, 44, 311, 615
Bsp19I	CCATGG	1 cut(s)	784
BspACI	CCGC	2 cut(s)	372, 825
BspANI	GGCC	3 cut(s)	187, 243, 263
BspCNI	CTCAG	3 cut(s)	493, 519, 545
BspLI	GGNNCC	5 cut(s)	123, 187, 497, 661, 708
BspPI	GGATC	1 cut(s)	52
BspT107I	GGYRCC	1 cut(s)	495
BspTI	CTTAAG	1 cut(s)	307
BsrBI	CCGCTC	1 cut(s)	374
BsrI	ACTGG	1 cut(s)	128
BssECI	CCNNGG	5 cut(s)	39, 244, 264, 279, 784
BssMI	GATC	4 cut(s)	12, 44, 311, 615
BssT1I	CCWWGG	4 cut(s)	244, 264, 279, 784
Bst2UI	CCWGG	1 cut(s)	119
Bst4CI	ACNGT	2 cut(s)	233, 330
BstAFI	CTTAAG	1 cut(s)	307
BstAPI	GCANNNNNTGC	1 cut(s)	678
BstC8I	GCNNGC	2 cut(s)	241, 830
BstDEI	CTNAG	5 cut(s)	203, 501, 506, 532, 621
BstDSI	CCRYGG	1 cut(s)	784
BstF5I	GGATG	2 cut(s)	103, 114
BstH2I	RGCGCY	1 cut(s)	210
BstHHI	GCGC	1 cut(s)	209
BstKTI	GATC	4 cut(s)	15, 47, 314, 618
BstMBI	GATC	4 cut(s)	12, 44, 311, 615
BstMWI	GCNNNNNNNGC	3 cut(s)	290, 502, 678
BstNI	CCWGG	1 cut(s)	119
BstSCI	CCNGG	3 cut(s)	38, 117, 182
BstSFI	CTRYAG	1 cut(s)	441
BstSLI	GKGCMC	1 cut(s)	189
BstV1I	GCAGC	1 cut(s)	98
BstV2I	GAAGAC	2 cut(s)	79, 889
BstX2I	RGATCY	2 cut(s)	44, 615
BstXI	CCANNNNNNTGG	1 cut(s)	132
BstYI	RGATCY	2 cut(s)	44, 615
BsuRI	GGCC	3 cut(s)	187, 243, 263
BtgI	CCRYGG	1 cut(s)	784
BtgZI	GCGATG	1 cut(s)	47
BtrI	CACGTC	1 cut(s)	83
BtsCI	GGATG	2 cut(s)	103, 114
Cac8I	GCNNGC	2 cut(s)	241, 830
CfoI	GCGC	1 cut(s)	209
Cfr13I	GGNCC	5 cut(s)	185, 186, 659, 706, 788
CviAII	CATG	2 cut(s)	785, 817
DdeI	CTNAG	5 cut(s)	203, 501, 506, 532, 621
DpnI	GATC	4 cut(s)	14, 46, 313, 617
DpnII	GATC	4 cut(s)	12, 44, 311, 615
EaeI	YGGCCR	1 cut(s)	261
Ecl136II	GAGCTC	2 cut(s)	491, 505
Eco130I	CCWWGG	4 cut(s)	244, 264, 279, 784
Eco24I	GRGCYC	3 cut(s)	189, 493, 507
Eco47I	GGWCC	3 cut(s)	659, 706, 788
Eco47III	AGCGCT	1 cut(s)	208
Eco53kI	GAGCTC	2 cut(s)	491, 505
Eco88I	CYCGRG	1 cut(s)	48
EcoICRI	GAGCTC	2 cut(s)	491, 505
EcoRII	CCWGG	1 cut(s)	117
EcoT14I	CCWWGG	4 cut(s)	244, 264, 279, 784
EcoT38I	GRGCYC	3 cut(s)	189, 493, 507
ErhI	CCWWGG	4 cut(s)	244, 264, 279, 784
FaeI	CATG	2 cut(s)	788, 820
FaiI	YATR	9 cut(s)	22, 165, 227, 468, 470, 486, 551, 786, 818
FalI	AAGNNNNNCTT	2 cut(s)	138, 170
FaqI	GGGAC	3 cut(s)	645, 680, 692
FatI	CATG	2 cut(s)	784, 816
FblI	GTMKAC	1 cut(s)	320
Fnu4HI	GCNGC	2 cut(s)	87, 826
FokI	GGATG	2 cut(s)	90, 101
FriOI	GRGCYC	3 cut(s)	189, 493, 507
Fsp4HI	GCNGC	2 cut(s)	87, 826
FspBI	CTAG	2 cut(s)	245, 907
GlaI	GCGC	1 cut(s)	208
GluI	GCNGC	2 cut(s)	87, 826
GsuI	CTGGAG	1 cut(s)	821
HaeII	RGCGCY	1 cut(s)	210
HaeIII	GGCC	3 cut(s)	187, 243, 263
HapII	CCGG	6 cut(s)	39, 107, 183, 833, 846, 858
HhaI	GCGC	1 cut(s)	209
Hin1II	CATG	2 cut(s)	788, 820
Hin6I	GCGC	1 cut(s)	207
HinP1I	GCGC	1 cut(s)	207
HincII	GTYRAC	1 cut(s)	321
HindII	GTYRAC	1 cut(s)	321
HinfI	GANTC	6 cut(s)	26, 31, 95, 317, 379, 773
HpaII	CCGG	6 cut(s)	39, 107, 183, 833, 846, 858
HphI	GGTGA	3 cut(s)	552, 734, 770
Hpy166II	GTNNAC	1 cut(s)	321
Hpy188I	TCNGA	4 cut(s)	17, 316, 378, 509
Hpy188III	TCNNGA	3 cut(s)	48, 534, 586
Hpy8I	GTNNAC	1 cut(s)	321
Hpy99I	CGWCG	3 cut(s)	72, 84, 174
HpyAV	CCTTC	2 cut(s)	453, 576
HpyCH4III	ACNGT	2 cut(s)	233, 330
HpyCH4IV	ACGT	1 cut(s)	82
HpyCH4V	TGCA	4 cut(s)	86, 347, 672, 874
HpyF10VI	GCNNNNNNNGC	3 cut(s)	290, 502, 678
HpyF3I	CTNAG	5 cut(s)	203, 501, 506, 532, 621
HpySE526I	ACGT	1 cut(s)	82
Hsp92II	CATG	2 cut(s)	788, 820
HspAI	GCGC	1 cut(s)	207
Kzo9I	GATC	4 cut(s)	12, 44, 311, 615
LmnI	GCTCC	3 cut(s)	127, 214, 581
Lsp1109I	GCAGC	1 cut(s)	98
LweI	GCATC	1 cut(s)	668
MaeI	CTAG	2 cut(s)	245, 907
MaeII	ACGT	1 cut(s)	82
MaeIII	GTNAC	2 cut(s)	23, 558
MalI	GATC	4 cut(s)	14, 46, 313, 617
MbiI	CCGCTC	1 cut(s)	374
MboI	GATC	4 cut(s)	12, 44, 311, 615
MboII	GAAGA	6 cut(s)	84, 210, 533, 873, 889, 892
MfeI	CAATTG	1 cut(s)	414
MflI	RGATCY	2 cut(s)	44, 615
MhlI	GDGCHC	3 cut(s)	189, 493, 507
MlsI	TGGCCA	1 cut(s)	263
MluCI	AATT	8 cut(s)	214, 414, 432, 472, 608, 712, 755, 875
MluNI	TGGCCA	1 cut(s)	263
MlyI	GAGTC	3 cut(s)	20, 25, 326
MnlI	CCTC	8 cut(s)	64, 87, 262, 391, 434, 573, 801, 823
Mox20I	TGGCCA	1 cut(s)	263
MscI	TGGCCA	1 cut(s)	263
MseI	TTAA	3 cut(s)	308, 332, 639
MslI	CAYNNNNRTG	1 cut(s)	783
Msp20I	TGGCCA	1 cut(s)	263
MspCI	CTTAAG	1 cut(s)	307
MspI	CCGG	6 cut(s)	39, 107, 183, 833, 846, 858
MspR9I	CCNGG	3 cut(s)	40, 119, 184
MunI	CAATTG	1 cut(s)	414
MvaI	CCWGG	1 cut(s)	119
MwoI	GCNNNNNNNGC	3 cut(s)	290, 502, 678
NciI	CCSGG	2 cut(s)	40, 184
NcoI	CCATGG	1 cut(s)	784
NdeII	GATC	4 cut(s)	12, 44, 311, 615
NlaIII	CATG	2 cut(s)	788, 820
NlaIV	GGNNCC	5 cut(s)	123, 187, 497, 661, 708
NmeAIII	GCCGAG	1 cut(s)	472
NmuCI	GTSAC	2 cut(s)	23, 558
PaeR7I	CTCGAG	1 cut(s)	48
PcsI	WCGNNNNNNNCGW	3 cut(s)	55, 64, 76
PfeI	GAWTC	3 cut(s)	95, 379, 773
PkrI	GCNGC	2 cut(s)	88, 827
PleI	GAGTC	3 cut(s)	20, 25, 325
PpsI	GAGTC	3 cut(s)	20, 25, 325
PsiI	TTATAA	1 cut(s)	551
Psp124BI	GAGCTC	2 cut(s)	493, 507
Psp6I	CCWGG	1 cut(s)	117
PspGI	CCWGG	1 cut(s)	117
PspN4I	GGNNCC	5 cut(s)	123, 187, 497, 661, 708
PspOMI	GGGCCC	1 cut(s)	185
PspPI	GGNCC	5 cut(s)	185, 186, 659, 706, 788
PsuI	RGATCY	2 cut(s)	44, 615
RseI	CAYNNNNRTG	1 cut(s)	783
SacI	GAGCTC	2 cut(s)	493, 507
SalI	GTCGAC	1 cut(s)	319
SaqAI	TTAA	3 cut(s)	308, 332, 639
SatI	GCNGC	2 cut(s)	87, 826
Sau3AI	GATC	4 cut(s)	12, 44, 311, 615
Sau96I	GGNCC	5 cut(s)	185, 186, 659, 706, 788
SchI	GAGTC	3 cut(s)	20, 25, 326
ScrFI	CCNGG	3 cut(s)	40, 119, 184
SduI	GDGCHC	3 cut(s)	189, 493, 507
SfaNI	GCATC	1 cut(s)	668
SfcI	CTRYAG	1 cut(s)	441
Sfr274I	CTCGAG	1 cut(s)	48
SinI	GGWCC	3 cut(s)	659, 706, 788
SlaI	CTCGAG	1 cut(s)	48
SmiMI	CAYNNNNRTG	1 cut(s)	783
SmlI	CTYRAG	2 cut(s)	48, 307
SmoI	CTYRAG	2 cut(s)	48, 307
Sse9I	AATT	8 cut(s)	214, 414, 432, 472, 608, 712, 755, 875
SsiI	CCGC	2 cut(s)	372, 825
SspMI	CTAG	2 cut(s)	245, 907
SstI	GAGCTC	2 cut(s)	493, 507
StyD4I	CCNGG	3 cut(s)	38, 117, 182
StyI	CCWWGG	4 cut(s)	244, 264, 279, 784
TaaI	ACNGT	2 cut(s)	233, 330
TaiI	ACGT	1 cut(s)	85
TaqI	TCGA	6 cut(s)	29, 49, 70, 79, 255, 320
TasI	AATT	8 cut(s)	214, 414, 432, 472, 608, 712, 755, 875
TauI	GCSGC	1 cut(s)	828
TfiI	GAWTC	3 cut(s)	95, 379, 773
Tru1I	TTAA	3 cut(s)	308, 332, 639
Tru9I	TTAA	3 cut(s)	308, 332, 639
TseFI	GTSAC	2 cut(s)	23, 558
TseI	GCWGC	1 cut(s)	86
Tsp45I	GTSAC	2 cut(s)	23, 558
TspDTI	ATGAA	5 cut(s)	87, 92, 381, 473, 485
TspGWI	ACGGA	1 cut(s)	881
Vha464I	CTTAAG	1 cut(s)	307
VpaK11BI	GGWCC	3 cut(s)	659, 706, 788
XapI	RAATTY	4 cut(s)	432, 472, 608, 755
XhoI	CTCGAG	1 cut(s)	48
XmaJI	CCTAGG	1 cut(s)	244
XmiI	GTMKAC	1 cut(s)	320
XspI	CTAG	2 cut(s)	245, 907

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.