RchiOBHm_Chr7g0182931

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Reverse (-)
3975959 .. 3976677
719 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ16318

Sequence Viewer

Length: 351 bp
ATGGAGTCAAGAATTCTGAATAATTGGTCTTTGGCCTCTCTTTTATCAGCTATGTATGTCCTCTTTGGTCCTAAAGTGTGCAAGAGATACTCTTACACCATTGTCTCCCAAATGGTCCCAAATTGGCAAGGTGACAAAAGGACAAGGCGTAGGGAGATATTTGAATTTCAAGTGATGGGAGATTCTCACCACCGTGGTTCTCCTTTGCTAGAGAAAAGACCACGAGTGGCGGCTCGCCGGAAAAGTTCACCGGAAAAGTTTGCCGGAAAAGTCGATTTACAATTTTCTTCCAATCTCCGTGCATGTTTTATTCCCCTAGCTTCAAATCTCCGCATTTCAAGCCTCAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

116

Amino Acids

13.38

Weight (kDa)

10.72

Isoelectric Point (pI)

61.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 230, 331
AcsI RAATTY 2 cut(s) 12, 164
AgsI TTSAA 4 cut(s) 164, 170, 324, 339
AleI CACNNNNGTG 1 cut(s) 192
AluBI AGCT 2 cut(s) 50, 320
AluI AGCT 2 cut(s) 50, 320
Alw26I GTCTC 1 cut(s) 109
AoxI GGCC 1 cut(s) 33
ApoI RAATTY 2 cut(s) 12, 164
AspS9I GGNCC 2 cut(s) 68, 115
AsuHPI GGTGA 3 cut(s) 143, 179, 240
AvaII GGWCC 2 cut(s) 68, 115
BauI CACGAG 1 cut(s) 222
BccI CCATC 1 cut(s) 169
BcoDI GTCTC 1 cut(s) 109
BfaI CTAG 2 cut(s) 209, 317
BisI GCNGC 1 cut(s) 231
BlsI GCNGC 1 cut(s) 232
Bme18I GGWCC 2 cut(s) 68, 115
BmgT120I GGNCC 2 cut(s) 68, 115
BmiI GGNNCC 1 cut(s) 117
BsaJI CCNNGG 1 cut(s) 193
BsaWI WCCGGW 1 cut(s) 250
BseDI CCNNGG 1 cut(s) 193
BshFI GGCC 1 cut(s) 35
BsiSI CCGG 3 cut(s) 238, 251, 264
BslFI GGGAC 1 cut(s) 101
BsmAI GTCTC 1 cut(s) 109
BsmFI GGGAC 1 cut(s) 101
BsnI GGCC 1 cut(s) 35
BspACI CCGC 2 cut(s) 230, 331
BspANI GGCC 1 cut(s) 35
BspLI GGNNCC 1 cut(s) 117
BssECI CCNNGG 1 cut(s) 193
BssSI CACGAG 1 cut(s) 222
Bst2BI CACGAG 1 cut(s) 222
Bst4CI ACNGT 1 cut(s) 194
BstC8I GCNNGC 1 cut(s) 235
BstDSI CCRYGG 1 cut(s) 193
BstMAI GTCTC 1 cut(s) 109
BstMWI GCNNNNNNNGC 1 cut(s) 339
BstNSI RCATGY 1 cut(s) 306
BsuRI GGCC 1 cut(s) 35
BtgI CCRYGG 1 cut(s) 193
Cac8I GCNNGC 1 cut(s) 235
Cfr13I GGNCC 2 cut(s) 68, 115
CviAII CATG 1 cut(s) 303
CviJI RGCY 5 cut(s) 35, 50, 233, 320, 342
CviKI_1 RGCY 5 cut(s) 35, 50, 233, 320, 342
Eco47I GGWCC 2 cut(s) 68, 115
EcoRI GAATTC 1 cut(s) 12
FaeI CATG 1 cut(s) 306
FaiI YATR 3 cut(s) 53, 57, 304
FaqI GGGAC 1 cut(s) 101
FatI CATG 1 cut(s) 302
Fnu4HI GCNGC 1 cut(s) 231
Fsp4HI GCNGC 1 cut(s) 231
FspBI CTAG 2 cut(s) 209, 317
GluI GCNGC 1 cut(s) 231
HaeIII GGCC 1 cut(s) 35
HapII CCGG 3 cut(s) 238, 251, 264
Hin1II CATG 1 cut(s) 306
HinfI GANTC 2 cut(s) 5, 182
HpaII CCGG 3 cut(s) 238, 251, 264
HphI GGTGA 3 cut(s) 143, 179, 240
Hpy166II GTNNAC 1 cut(s) 248
Hpy188I TCNGA 1 cut(s) 18
Hpy188III TCNNGA 1 cut(s) 9
Hpy8I GTNNAC 1 cut(s) 248
HpyCH4III ACNGT 1 cut(s) 194
HpyCH4V TGCA 2 cut(s) 81, 302
HpyF10VI GCNNNNNNNGC 1 cut(s) 339
Hsp92II CATG 1 cut(s) 306
LpnPI CCDG 3 cut(s) 251, 264, 277
MaeI CTAG 2 cut(s) 209, 317
MaeIII GTNAC 1 cut(s) 131
MboII GAAGA 1 cut(s) 279
MluCI AATT 6 cut(s) 12, 22, 121, 164, 281, 346
MlyI GAGTC 1 cut(s) 14
MnlI CCTC 2 cut(s) 46, 71
MslI CAYNNNNRTG 1 cut(s) 192
MspI CCGG 3 cut(s) 238, 251, 264
MwoI GCNNNNNNNGC 1 cut(s) 339
NlaIII CATG 1 cut(s) 306
NlaIV GGNNCC 1 cut(s) 117
NmuCI GTSAC 1 cut(s) 131
NspI RCATGY 1 cut(s) 306
OliI CACNNNNGTG 1 cut(s) 192
PfeI GAWTC 1 cut(s) 182
PkrI GCNGC 1 cut(s) 232
PleI GAGTC 1 cut(s) 13
PpsI GAGTC 1 cut(s) 13
PspN4I GGNNCC 1 cut(s) 117
PspPI GGNCC 2 cut(s) 68, 115
RseI CAYNNNNRTG 1 cut(s) 192
SatI GCNGC 1 cut(s) 231
Sau96I GGNCC 2 cut(s) 68, 115
SchI GAGTC 1 cut(s) 14
SetI ASST 3 cut(s) 52, 133, 322
SinI GGWCC 2 cut(s) 68, 115
SmiMI CAYNNNNRTG 1 cut(s) 192
Sse9I AATT 6 cut(s) 12, 22, 121, 164, 281, 346
SsiI CCGC 2 cut(s) 230, 331
SspMI CTAG 2 cut(s) 209, 317
TaaI ACNGT 1 cut(s) 194
TaqI TCGA 1 cut(s) 273
TasI AATT 6 cut(s) 12, 22, 121, 164, 281, 346
TauI GCSGC 1 cut(s) 233
TfiI GAWTC 1 cut(s) 182
TseFI GTSAC 1 cut(s) 131
Tsp45I GTSAC 1 cut(s) 131
TspGWI ACGGA 1 cut(s) 287
VpaK11BI GGWCC 2 cut(s) 68, 115
XapI RAATTY 2 cut(s) 12, 164
XceI RCATGY 1 cut(s) 306
XspI CTAG 2 cut(s) 209, 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.