RchiOBHm_Chr2g0173931

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0017425
Physical Location & Seq
Reverse (-)
86738339 .. 86740801
2463 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ54110

Sequence Viewer

Length: 276 bp
ATGTTAAATCCCTTGGTCAATCTTCAGTCTCTCTCTCGAGAACTTCTCTTCAGCCGCTCTCTCTTCTCTCGCCCTCTCATTCATCTCTTCGTCAATCCTTTCAATTTTCTCATCGCCATAGAGAATTCGAGATCCCCAAGGACTAGATCGATCAAGCTCACGAGTCTAAGGTCTCGGTTGGGTCATGAAGACCAGATCGATGGCCATGGATCTGAGCGGGATAGTGAAGGAGATTCTCTCGGTCGAAGGCAAGGATCTGTAGGATTTTCATCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

91

Amino Acids

10.25

Weight (kDa)

11.04

Isoelectric Point (pI)

79.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 57, 217
AciI CCGC 2 cut(s) 55, 217
AclWI GGATC 3 cut(s) 126, 217, 262
AcoI YGGCCR 1 cut(s) 202
AcsI RAATTY 1 cut(s) 124
AcuI CTGAAG 2 cut(s) 8, 34
AgsI TTSAA 1 cut(s) 103
AluBI AGCT 1 cut(s) 157
AluI AGCT 1 cut(s) 157
Alw26I GTCTC 2 cut(s) 33, 177
AlwI GGATC 3 cut(s) 126, 217, 262
Ama87I CYCGRG 1 cut(s) 36
AoxI GGCC 1 cut(s) 202
ApoI RAATTY 1 cut(s) 124
AvaI CYCGRG 1 cut(s) 36
BalI TGGCCA 1 cut(s) 204
BauI CACGAG 1 cut(s) 160
BbsI GAAGAC 1 cut(s) 195
BccI CCATC 1 cut(s) 194
BcoDI GTCTC 2 cut(s) 33, 177
BfaI CTAG 1 cut(s) 144
BfmI CTRYAG 1 cut(s) 258
BisI GCNGC 1 cut(s) 55
BlsI GCNGC 1 cut(s) 56
BmeT110I CYCGRG 1 cut(s) 36
BpiI GAAGAC 1 cut(s) 195
BplI GAGNNNNNCTC 4 cut(s) 30, 62, 222, 254
Bsa29I ATCGAT 2 cut(s) 149, 198
BsaBI GATNNNNATC 1 cut(s) 268
BsaI GGTCTC 1 cut(s) 177
BsaJI CCNNGG 3 cut(s) 12, 137, 205
Bse8I GATNNNNATC 1 cut(s) 268
BseCI ATCGAT 2 cut(s) 149, 198
BseDI CCNNGG 3 cut(s) 12, 137, 205
BseJI GATNNNNATC 1 cut(s) 268
BseMII CTCAG 1 cut(s) 204
Bsh1285I CGRYCG 1 cut(s) 244
BshFI GGCC 1 cut(s) 204
BshVI ATCGAT 2 cut(s) 149, 198
BsiEI CGRYCG 1 cut(s) 244
BsiHKCI CYCGRG 1 cut(s) 36
BsmAI GTCTC 2 cut(s) 33, 177
BsnI GGCC 1 cut(s) 204
Bso31I GGTCTC 1 cut(s) 177
BsoBI CYCGRG 1 cut(s) 36
Bsp143I GATC 6 cut(s) 131, 146, 150, 195, 209, 254
Bsp19I CCATGG 1 cut(s) 205
BspACI CCGC 2 cut(s) 55, 217
BspANI GGCC 1 cut(s) 204
BspCNI CTCAG 1 cut(s) 205
BspDI ATCGAT 2 cut(s) 149, 198
BspHI TCATGA 1 cut(s) 184
BspPI GGATC 3 cut(s) 126, 217, 262
BspTNI GGTCTC 1 cut(s) 177
BsrBI CCGCTC 2 cut(s) 57, 217
BssECI CCNNGG 3 cut(s) 12, 137, 205
BssMI GATC 6 cut(s) 131, 146, 150, 195, 209, 254
BssSI CACGAG 1 cut(s) 160
BssT1I CCWWGG 3 cut(s) 12, 137, 205
Bst2BI CACGAG 1 cut(s) 160
Bst6I CTCTTC 3 cut(s) 53, 68, 92
BstDEI CTNAG 2 cut(s) 167, 213
BstDSI CCRYGG 1 cut(s) 205
BstKTI GATC 6 cut(s) 134, 149, 153, 198, 212, 257
BstMAI GTCTC 2 cut(s) 33, 177
BstMBI GATC 6 cut(s) 131, 146, 150, 195, 209, 254
BstMCI CGRYCG 1 cut(s) 244
BstSFI CTRYAG 1 cut(s) 258
BstV2I GAAGAC 1 cut(s) 195
BstX2I RGATCY 3 cut(s) 131, 209, 254
BstXI CCANNNNNNTGG 1 cut(s) 200
BstYI RGATCY 3 cut(s) 131, 209, 254
Bsu15I ATCGAT 2 cut(s) 149, 198
BsuRI GGCC 1 cut(s) 204
BsuTUI ATCGAT 2 cut(s) 149, 198
BtgI CCRYGG 1 cut(s) 205
BtgZI GCGATG 1 cut(s) 97
CciI TCATGA 1 cut(s) 184
ClaI ATCGAT 2 cut(s) 149, 198
CviAII CATG 2 cut(s) 185, 206
CviJI RGCY 3 cut(s) 54, 157, 204
CviKI_1 RGCY 3 cut(s) 54, 157, 204
DdeI CTNAG 2 cut(s) 167, 213
DpnI GATC 6 cut(s) 133, 148, 152, 197, 211, 256
DpnII GATC 6 cut(s) 131, 146, 150, 195, 209, 254
EaeI YGGCCR 1 cut(s) 202
Eam1104I CTCTTC 3 cut(s) 53, 68, 92
EarI CTCTTC 3 cut(s) 53, 68, 92
Eco130I CCWWGG 3 cut(s) 12, 137, 205
Eco31I GGTCTC 1 cut(s) 177
Eco57I CTGAAG 2 cut(s) 8, 34
Eco88I CYCGRG 1 cut(s) 36
EcoRI GAATTC 1 cut(s) 124
EcoT14I CCWWGG 3 cut(s) 12, 137, 205
ErhI CCWWGG 3 cut(s) 12, 137, 205
FaeI CATG 2 cut(s) 188, 209
FaiI YATR 3 cut(s) 119, 186, 207
FatI CATG 2 cut(s) 184, 205
FauI CCCGC 1 cut(s) 210
Fnu4HI GCNGC 1 cut(s) 55
Fsp4HI GCNGC 1 cut(s) 55
FspBI CTAG 1 cut(s) 144
GluI GCNGC 1 cut(s) 55
HaeIII GGCC 1 cut(s) 204
Hin1II CATG 2 cut(s) 188, 209
HinfI GANTC 2 cut(s) 163, 233
Hpy188I TCNGA 1 cut(s) 214
Hpy188III TCNNGA 5 cut(s) 36, 38, 129, 160, 185
HpyAV CCTTC 2 cut(s) 221, 240
HpyF3I CTNAG 2 cut(s) 167, 213
Hsp92II CATG 2 cut(s) 188, 209
Kzo9I GATC 6 cut(s) 131, 146, 150, 195, 209, 254
LpnPI CCDG 1 cut(s) 206
MaeI CTAG 1 cut(s) 144
MalI GATC 6 cut(s) 133, 148, 152, 197, 211, 256
MbiI CCGCTC 2 cut(s) 57, 217
MboI GATC 6 cut(s) 131, 146, 150, 195, 209, 254
MboII GAAGA 5 cut(s) 14, 40, 55, 79, 200
MflI RGATCY 3 cut(s) 131, 209, 254
MlsI TGGCCA 1 cut(s) 204
MluCI AATT 2 cut(s) 103, 124
MluNI TGGCCA 1 cut(s) 204
MlyI GAGTC 1 cut(s) 172
MnlI CCTC 1 cut(s) 84
Mox20I TGGCCA 1 cut(s) 204
MscI TGGCCA 1 cut(s) 204
MseI TTAA 1 cut(s) 5
Msp20I TGGCCA 1 cut(s) 204
NcoI CCATGG 1 cut(s) 205
NdeII GATC 6 cut(s) 131, 146, 150, 195, 209, 254
NlaIII CATG 2 cut(s) 188, 209
PaeR7I CTCGAG 1 cut(s) 36
PagI TCATGA 1 cut(s) 184
PfeI GAWTC 1 cut(s) 233
PkrI GCNGC 1 cut(s) 56
PleI GAGTC 1 cut(s) 171
PpsI GAGTC 1 cut(s) 171
PsuI RGATCY 3 cut(s) 131, 209, 254
SaqAI TTAA 1 cut(s) 5
SatI GCNGC 1 cut(s) 55
Sau3AI GATC 6 cut(s) 131, 146, 150, 195, 209, 254
SchI GAGTC 1 cut(s) 172
SetI ASST 2 cut(s) 159, 173
SfcI CTRYAG 1 cut(s) 258
Sfr274I CTCGAG 1 cut(s) 36
SlaI CTCGAG 1 cut(s) 36
SmlI CTYRAG 1 cut(s) 36
SmoI CTYRAG 1 cut(s) 36
Sse9I AATT 2 cut(s) 103, 124
SsiI CCGC 2 cut(s) 55, 217
SspMI CTAG 1 cut(s) 144
StyI CCWWGG 3 cut(s) 12, 137, 205
TaqI TCGA 5 cut(s) 37, 128, 149, 198, 244
TaqII GACCGA 1 cut(s) 230
TasI AATT 2 cut(s) 103, 124
TauI GCSGC 1 cut(s) 57
TfiI GAWTC 1 cut(s) 233
Tru1I TTAA 1 cut(s) 5
Tru9I TTAA 1 cut(s) 5
TspDTI ATGAA 3 cut(s) 71, 201, 258
XapI RAATTY 1 cut(s) 124
XhoI CTCGAG 1 cut(s) 36
XspI CTAG 1 cut(s) 144
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.