Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0017425

Physical Location & Seq

Genomic Coordinates Forward (+)

24169718 .. 24186195

Gene Structure 16478 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00019760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGTTGGAAAACTGTTAAATTTTCTCTCTATCAACCATTTTGAGAGGAAAAAGAATATAGACTTGGAGATTTCAGCTTTTGCCATGCTTCGCACCCTTGAAGAAGATGTGCTTCATGGTCTTAATCTAGCTAAAGCTTCCTTGACAATTGCAGGCAATGTAGACTACGAAGGTTGTGTGGTGATTCTATGTACACTAAGCGATGAACTTTTAGAAGGAAAAGTTATGAGTAAAAGCATGGGTTTTTCCCCGGTGTCTACGAGAGACTTGTGCTCGTGGCGGCCTTTGTGGCGATGCCGTGATCGATGGATTGATTTGGCGGACGATGGTGAATCGTTGTTTGAGAGGCTAAGAAGACGCAGCGGGAATTTAGAGGGGCCTCTTGATATAGAGGATTACAATGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00510 ko00513 ko01100 map00510 map00513 map01100

Pfam Domains

Protein Families

Glyco_transf_4 Glycos_transf_1

Protein Analysis

135

Amino Acids

15.35

Weight (kDa)

5.05

Isoelectric Point (pI)

47.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017425)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0088641 RchiOBHm_Chr2g0173931 RchiOBHm_Chr3g0486691 RchiOBHm_Chr4g0402621
rosa_roxburghii	Rroxscaffold_1G00003230 Rroxscaffold_1G00019760 Rroxscaffold_2G00112610 Rroxscaffold_3G00223310 Rroxscaffold_3G00273670
rosa_rugosa	Rorug06G0360700.1
rosa_samantha	Rh4BG248900 Rh6BG480300 Rh6CG486000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	162, 257
AciI	CCGC	3 cut(s)	280, 320, 363
AcsI	RAATTY	2 cut(s)	19, 367
AfaI	GTAC	1 cut(s)	193
AgsI	TTSAA	1 cut(s)	101
AjuI	GAANNNNNNNTTGG	2 cut(s)	47, 79
AluBI	AGCT	3 cut(s)	77, 131, 137
AluI	AGCT	3 cut(s)	77, 131, 137
Alw21I	GWGCWC	1 cut(s)	275
Alw26I	GTCTC	1 cut(s)	258
AoxI	GGCC	2 cut(s)	281, 377
ApeKI	GCWGC	1 cut(s)	360
ApoI	RAATTY	2 cut(s)	19, 367
AspS9I	GGNCC	1 cut(s)	377
AsuC2I	CCSGG	1 cut(s)	251
AsuHPI	GGTGA	2 cut(s)	193, 341
BauI	CACGAG	1 cut(s)	274
BbsI	GAAGAC	1 cut(s)	361
Bbv12I	GWGCWC	1 cut(s)	275
BbvI	GCAGC	1 cut(s)	372
BccI	CCATC	2 cut(s)	300, 320
BceAI	ACGGC	1 cut(s)	282
BcnI	CCSGG	1 cut(s)	251
BcoDI	GTCTC	1 cut(s)	258
BfaI	CTAG	1 cut(s)	128
BglI	GCCNNNNNGGC	1 cut(s)	289
BisI	GCNGC	2 cut(s)	281, 361
BlsI	GCNGC	2 cut(s)	282, 362
Bme1390I	CCNGG	1 cut(s)	251
BmgT120I	GGNCC	1 cut(s)	377
BmiI	GGNNCC	1 cut(s)	378
BmrFI	CCNGG	1 cut(s)	251
BmsI	GCATC	1 cut(s)	284
BpiI	GAAGAC	1 cut(s)	361
BpuMI	CCSGG	1 cut(s)	251
Bsa29I	ATCGAT	1 cut(s)	304
BsaJI	CCNNGG	1 cut(s)	249
Bse3DI	GCAATG	1 cut(s)	163
BseCI	ATCGAT	1 cut(s)	304
BseDI	CCNNGG	1 cut(s)	249
BseMI	GCAATG	1 cut(s)	163
BseXI	GCAGC	1 cut(s)	372
BshFI	GGCC	2 cut(s)	283, 379
BshVI	ATCGAT	1 cut(s)	304
BsiHKAI	GWGCWC	1 cut(s)	275
BsiSI	CCGG	1 cut(s)	251
BsmAI	GTCTC	1 cut(s)	258
BsnI	GGCC	2 cut(s)	283, 379
Bsp1286I	GDGCHC	1 cut(s)	275
Bsp1407I	TGTACA	1 cut(s)	191
Bsp143I	GATC	1 cut(s)	301
BspACI	CCGC	3 cut(s)	280, 320, 363
BspANI	GGCC	2 cut(s)	283, 379
BspDI	ATCGAT	1 cut(s)	304
BspLI	GGNNCC	1 cut(s)	378
BsrDI	GCAATG	1 cut(s)	163
BsrGI	TGTACA	1 cut(s)	191
BssECI	CCNNGG	1 cut(s)	249
BssMI	GATC	1 cut(s)	301
BssSI	CACGAG	1 cut(s)	274
Bst2BI	CACGAG	1 cut(s)	274
Bst4CI	ACNGT	1 cut(s)	15
BstAUI	TGTACA	1 cut(s)	191
BstC8I	GCNNGC	1 cut(s)	154
BstDEI	CTNAG	2 cut(s)	197, 350
BstKTI	GATC	1 cut(s)	304
BstMAI	GTCTC	1 cut(s)	258
BstMBI	GATC	1 cut(s)	301
BstMWI	GCNNNNNNNGC	1 cut(s)	289
BstSCI	CCNGG	1 cut(s)	249
BstV1I	GCAGC	1 cut(s)	372
BstV2I	GAAGAC	1 cut(s)	361
Bsu15I	ATCGAT	1 cut(s)	304
BsuRI	GGCC	2 cut(s)	283, 379
BsuTUI	ATCGAT	1 cut(s)	304
BtgZI	GCGATG	2 cut(s)	216, 307
Cac8I	GCNNGC	1 cut(s)	154
Cfr13I	GGNCC	1 cut(s)	377
ClaI	ATCGAT	1 cut(s)	304
CseI	GACGC	1 cut(s)	366
Csp6I	GTAC	1 cut(s)	192
CviAII	CATG	3 cut(s)	85, 116, 238
CviJI	RGCY	6 cut(s)	77, 131, 137, 283, 349, 379
CviKI_1	RGCY	6 cut(s)	77, 131, 137, 283, 349, 379
CviQI	GTAC	1 cut(s)	192
DdeI	CTNAG	2 cut(s)	197, 350
DpnI	GATC	1 cut(s)	303
DpnII	GATC	1 cut(s)	301
EciI	GGCGGA	1 cut(s)	335
EcoO109I	RGGNCCY	1 cut(s)	377
EcoT22I	ATGCAT	1 cut(s)	406
FaeI	CATG	3 cut(s)	88, 119, 241
FaiI	YATR	8 cut(s)	59, 86, 117, 190, 227, 239, 389, 406
FalI	AAGNNNNNCTT	2 cut(s)	96, 128
FatI	CATG	3 cut(s)	84, 115, 237
FauI	CCCGC	1 cut(s)	356
FblI	GTMKAC	2 cut(s)	162, 257
Fnu4HI	GCNGC	2 cut(s)	281, 361
Fsp4HI	GCNGC	2 cut(s)	281, 361
FspBI	CTAG	1 cut(s)	128
GluI	GCNGC	2 cut(s)	281, 361
HaeIII	GGCC	2 cut(s)	283, 379
HapII	CCGG	1 cut(s)	251
HgaI	GACGC	1 cut(s)	366
Hin1II	CATG	3 cut(s)	88, 119, 241
HindIII	AAGCTT	1 cut(s)	135
HinfI	GANTC	2 cut(s)	184, 332
HpaII	CCGG	1 cut(s)	251
HphI	GGTGA	2 cut(s)	193, 341
Hpy166II	GTNNAC	3 cut(s)	163, 194, 258
Hpy188III	TCNNGA	1 cut(s)	383
Hpy8I	GTNNAC	3 cut(s)	163, 194, 258
HpyAV	CCTTC	2 cut(s)	164, 209
HpyCH4III	ACNGT	1 cut(s)	15
HpyCH4V	TGCA	2 cut(s)	152, 404
HpyF10VI	GCNNNNNNNGC	1 cut(s)	289
HpyF3I	CTNAG	2 cut(s)	197, 350
Hsp92II	CATG	3 cut(s)	88, 119, 241
Kzo9I	GATC	1 cut(s)	301
LpnPI	CCDG	2 cut(s)	138, 264
Lsp1109I	GCAGC	1 cut(s)	372
LweI	GCATC	1 cut(s)	284
MaeI	CTAG	1 cut(s)	128
MalI	GATC	1 cut(s)	303
MboI	GATC	1 cut(s)	301
MboII	GAAGA	3 cut(s)	113, 116, 366
MfeI	CAATTG	1 cut(s)	147
MhlI	GDGCHC	1 cut(s)	275
MluCI	AATT	3 cut(s)	19, 147, 367
MnlI	CCTC	5 cut(s)	39, 339, 367, 385, 390
Mph1103I	ATGCAT	1 cut(s)	406
MseI	TTAA	2 cut(s)	17, 123
MspA1I	CMGCKG	1 cut(s)	363
MspI	CCGG	1 cut(s)	251
MspR9I	CCNGG	1 cut(s)	251
MunI	CAATTG	1 cut(s)	147
MwoI	GCNNNNNNNGC	1 cut(s)	289
NciI	CCSGG	1 cut(s)	251
NdeII	GATC	1 cut(s)	301
NlaIII	CATG	3 cut(s)	88, 119, 241
NlaIV	GGNNCC	1 cut(s)	378
NsiI	ATGCAT	1 cut(s)	406
PfeI	GAWTC	2 cut(s)	184, 332
PkrI	GCNGC	2 cut(s)	282, 362
PspN4I	GGNNCC	1 cut(s)	378
PspPI	GGNCC	1 cut(s)	377
RsaI	GTAC	1 cut(s)	193
RsaNI	GTAC	1 cut(s)	192
SaqAI	TTAA	2 cut(s)	17, 123
SatI	GCNGC	2 cut(s)	281, 361
Sau3AI	GATC	1 cut(s)	301
Sau96I	GGNCC	1 cut(s)	377
ScrFI	CCNGG	1 cut(s)	251
SduI	GDGCHC	1 cut(s)	275
SetI	ASST	4 cut(s)	79, 133, 139, 175
SfaNI	GCATC	1 cut(s)	284
Sse9I	AATT	3 cut(s)	19, 147, 367
SsiI	CCGC	3 cut(s)	280, 320, 363
SspMI	CTAG	1 cut(s)	128
StyD4I	CCNGG	1 cut(s)	249
TaaI	ACNGT	1 cut(s)	15
TaqI	TCGA	1 cut(s)	304
TasI	AATT	3 cut(s)	19, 147, 367
TatI	WGTACW	1 cut(s)	191
TauI	GCSGC	1 cut(s)	283
TfiI	GAWTC	2 cut(s)	184, 332
Tru1I	TTAA	2 cut(s)	17, 123
Tru9I	TTAA	2 cut(s)	17, 123
TseI	GCWGC	1 cut(s)	360
TspDTI	ATGAA	2 cut(s)	104, 219
XapI	RAATTY	2 cut(s)	19, 367
XmiI	GTMKAC	2 cut(s)	162, 257
XspI	CTAG	1 cut(s)	128
Zsp2I	ATGCAT	1 cut(s)	406

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.