SAD/SRA domain
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr2g0088641 RchiOBHm_Chr2g0173931 RchiOBHm_Chr3g0486691 RchiOBHm_Chr4g0402621 |
| rosa_roxburghii | Rroxscaffold_1G00003230 Rroxscaffold_1G00019760 Rroxscaffold_2G00112610 Rroxscaffold_3G00223310 Rroxscaffold_3G00273670 |
| rosa_rugosa | Rorug06G0360700.1 |
| rosa_samantha | Rh4BG248900 Rh6BG480300 Rh6CG486000 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 2 cut(s) | 197, 204 |
| AciI | CCGC | 3 cut(s) | 95, 232, 355 |
| AclWI | GGATC | 2 cut(s) | 308, 449 |
| AcsI | RAATTY | 1 cut(s) | 241 |
| AfaI | GTAC | 1 cut(s) | 133 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 104 |
| AgsI | TTSAA | 2 cut(s) | 278, 445 |
| AjnI | CCWGG | 1 cut(s) | 320 |
| AluBI | AGCT | 3 cut(s) | 64, 69, 110 |
| AluI | AGCT | 3 cut(s) | 64, 69, 110 |
| Alw21I | GWGCWC | 4 cut(s) | 66, 215, 390, 475 |
| AlwI | GGATC | 2 cut(s) | 308, 449 |
| ApeKI | GCWGC | 2 cut(s) | 41, 220 |
| ApoI | RAATTY | 1 cut(s) | 241 |
| BanII | GRGCYC | 1 cut(s) | 66 |
| BauI | CACGAG | 1 cut(s) | 214 |
| Bbv12I | GWGCWC | 4 cut(s) | 66, 215, 390, 475 |
| BbvI | GCAGC | 2 cut(s) | 28, 232 |
| BccI | CCATC | 1 cut(s) | 229 |
| BciT130I | CCWGG | 1 cut(s) | 322 |
| BfaI | CTAG | 1 cut(s) | 309 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 229 |
| BisI | GCNGC | 3 cut(s) | 42, 95, 221 |
| BlpI | GCTNAGC | 1 cut(s) | 65 |
| BlsI | GCNGC | 3 cut(s) | 43, 96, 222 |
| Bme1390I | CCNGG | 1 cut(s) | 322 |
| BmrFI | CCNGG | 1 cut(s) | 322 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 457, 489 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 65 |
| BsaBI | GATNNNNATC | 1 cut(s) | 299 |
| BsaJI | CCNNGG | 2 cut(s) | 45, 83 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 104 |
| Bse118I | RCCGGY | 1 cut(s) | 35 |
| Bse8I | GATNNNNATC | 1 cut(s) | 299 |
| BseBI | CCWGG | 1 cut(s) | 322 |
| BseDI | CCNNGG | 2 cut(s) | 45, 83 |
| BseGI | GGATG | 1 cut(s) | 240 |
| BseJI | GATNNNNATC | 1 cut(s) | 299 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 104 |
| BseMII | CTCAG | 2 cut(s) | 79, 424 |
| BseXI | GCAGC | 2 cut(s) | 28, 232 |
| BsiHKAI | GWGCWC | 4 cut(s) | 66, 215, 390, 475 |
| BsiSI | CCGG | 1 cut(s) | 36 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 104 |
| Bsp1286I | GDGCHC | 4 cut(s) | 66, 215, 390, 475 |
| Bsp1407I | TGTACA | 1 cut(s) | 131 |
| Bsp143I | GATC | 2 cut(s) | 300, 454 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 65 |
| BspACI | CCGC | 3 cut(s) | 95, 232, 355 |
| BspCNI | CTCAG | 2 cut(s) | 78, 423 |
| BspPI | GGATC | 2 cut(s) | 308, 449 |
| BspQI | GCTCTTC | 2 cut(s) | 378, 480 |
| BsrFI | RCCGGY | 1 cut(s) | 35 |
| BsrGI | TGTACA | 1 cut(s) | 131 |
| BssAI | RCCGGY | 1 cut(s) | 35 |
| BssECI | CCNNGG | 2 cut(s) | 45, 83 |
| BssMI | GATC | 2 cut(s) | 300, 454 |
| BssSI | CACGAG | 1 cut(s) | 214 |
| BssT1I | CCWWGG | 2 cut(s) | 45, 83 |
| Bst2BI | CACGAG | 1 cut(s) | 214 |
| Bst2UI | CCWGG | 1 cut(s) | 322 |
| Bst4CI | ACNGT | 1 cut(s) | 202 |
| Bst6I | CTCTTC | 4 cut(s) | 273, 378, 480, 488 |
| BstAUI | TGTACA | 1 cut(s) | 131 |
| BstDEI | CTNAG | 4 cut(s) | 31, 65, 137, 410 |
| BstF5I | GGATG | 1 cut(s) | 240 |
| BstKTI | GATC | 2 cut(s) | 303, 457 |
| BstMBI | GATC | 2 cut(s) | 300, 454 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 41, 229, 445 |
| BstNI | CCWGG | 1 cut(s) | 322 |
| BstSCI | CCNGG | 1 cut(s) | 320 |
| BstV1I | GCAGC | 2 cut(s) | 28, 232 |
| BstX2I | RGATCY | 1 cut(s) | 454 |
| BstYI | RGATCY | 1 cut(s) | 454 |
| BtgZI | GCGATG | 1 cut(s) | 156 |
| BtsCI | GGATG | 1 cut(s) | 240 |
| Cfr10I | RCCGGY | 1 cut(s) | 35 |
| Csp6I | GTAC | 1 cut(s) | 132 |
| CviAII | CATG | 2 cut(s) | 178, 304 |
| CviJI | RGCY | 6 cut(s) | 35, 64, 69, 110, 223, 308 |
| CviKI_1 | RGCY | 6 cut(s) | 35, 64, 69, 110, 223, 308 |
| CviQI | GTAC | 1 cut(s) | 132 |
| DdeI | CTNAG | 4 cut(s) | 31, 65, 137, 410 |
| DpnI | GATC | 2 cut(s) | 302, 456 |
| DpnII | GATC | 2 cut(s) | 300, 454 |
| Eam1104I | CTCTTC | 4 cut(s) | 273, 378, 480, 488 |
| EarI | CTCTTC | 4 cut(s) | 273, 378, 480, 488 |
| EciI | GGCGGA | 1 cut(s) | 247 |
| Ecl136II | GAGCTC | 1 cut(s) | 64 |
| Eco130I | CCWWGG | 2 cut(s) | 45, 83 |
| Eco24I | GRGCYC | 1 cut(s) | 66 |
| Eco53kI | GAGCTC | 1 cut(s) | 64 |
| EcoICRI | GAGCTC | 1 cut(s) | 64 |
| EcoRII | CCWGG | 1 cut(s) | 320 |
| EcoT14I | CCWWGG | 2 cut(s) | 45, 83 |
| EcoT38I | GRGCYC | 1 cut(s) | 66 |
| ErhI | CCWWGG | 2 cut(s) | 45, 83 |
| FaeI | CATG | 2 cut(s) | 181, 307 |
| FatI | CATG | 2 cut(s) | 177, 303 |
| FauNDI | CATATG | 2 cut(s) | 396, 480 |
| FblI | GTMKAC | 2 cut(s) | 197, 204 |
| Fnu4HI | GCNGC | 3 cut(s) | 42, 95, 221 |
| FokI | GGATG | 1 cut(s) | 247 |
| FriOI | GRGCYC | 1 cut(s) | 66 |
| Fsp4HI | GCNGC | 3 cut(s) | 42, 95, 221 |
| FspBI | CTAG | 1 cut(s) | 309 |
| GluI | GCNGC | 3 cut(s) | 42, 95, 221 |
| HapII | CCGG | 1 cut(s) | 36 |
| Hin1II | CATG | 2 cut(s) | 181, 307 |
| HincII | GTYRAC | 1 cut(s) | 435 |
| HindII | GTYRAC | 1 cut(s) | 435 |
| HpaI | GTTAAC | 1 cut(s) | 435 |
| HpaII | CCGG | 1 cut(s) | 36 |
| Hpy166II | GTNNAC | 4 cut(s) | 134, 198, 205, 435 |
| Hpy8I | GTNNAC | 4 cut(s) | 134, 198, 205, 435 |
| Hpy99I | CGWCG | 1 cut(s) | 62 |
| HpyAV | CCTTC | 2 cut(s) | 149, 327 |
| HpyCH4III | ACNGT | 1 cut(s) | 202 |
| HpyCH4V | TGCA | 1 cut(s) | 484 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 41, 229, 445 |
| HpyF3I | CTNAG | 4 cut(s) | 31, 65, 137, 410 |
| Hsp92II | CATG | 2 cut(s) | 181, 307 |
| KspAI | GTTAAC | 1 cut(s) | 435 |
| Kzo9I | GATC | 2 cut(s) | 300, 454 |
| LguI | GCTCTTC | 2 cut(s) | 378, 480 |
| LmnI | GCTCC | 1 cut(s) | 107 |
| LpnPI | CCDG | 6 cut(s) | 49, 96, 307, 334, 356, 397 |
| Lsp1109I | GCAGC | 2 cut(s) | 28, 232 |
| MaeI | CTAG | 1 cut(s) | 309 |
| MalI | GATC | 2 cut(s) | 302, 456 |
| MboI | GATC | 2 cut(s) | 300, 454 |
| MboII | GAAGA | 3 cut(s) | 290, 395, 467 |
| MflI | RGATCY | 1 cut(s) | 454 |
| MhlI | GDGCHC | 4 cut(s) | 66, 215, 390, 475 |
| MluCI | AATT | 4 cut(s) | 99, 123, 241, 270 |
| MnlI | CCTC | 5 cut(s) | 20, 256, 274, 397, 489 |
| MseI | TTAA | 5 cut(s) | 252, 317, 341, 417, 434 |
| MslI | CAYNNNNRTG | 2 cut(s) | 395, 399 |
| MspI | CCGG | 1 cut(s) | 36 |
| MspR9I | CCNGG | 1 cut(s) | 322 |
| MvaI | CCWGG | 1 cut(s) | 322 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 41, 229, 445 |
| NdeI | CATATG | 2 cut(s) | 396, 480 |
| NdeII | GATC | 2 cut(s) | 300, 454 |
| NlaIII | CATG | 2 cut(s) | 181, 307 |
| NmeAIII | GCCGAG | 1 cut(s) | 450 |
| PciSI | GCTCTTC | 2 cut(s) | 378, 480 |
| PkrI | GCNGC | 3 cut(s) | 43, 96, 222 |
| Psp124BI | GAGCTC | 1 cut(s) | 66 |
| Psp6I | CCWGG | 1 cut(s) | 320 |
| PspGI | CCWGG | 1 cut(s) | 320 |
| PsuI | RGATCY | 1 cut(s) | 454 |
| RsaI | GTAC | 1 cut(s) | 133 |
| RsaNI | GTAC | 1 cut(s) | 132 |
| RseI | CAYNNNNRTG | 2 cut(s) | 395, 399 |
| SacI | GAGCTC | 1 cut(s) | 66 |
| SapI | GCTCTTC | 2 cut(s) | 378, 480 |
| SaqAI | TTAA | 5 cut(s) | 252, 317, 341, 417, 434 |
| SatI | GCNGC | 3 cut(s) | 42, 95, 221 |
| Sau3AI | GATC | 2 cut(s) | 300, 454 |
| ScrFI | CCNGG | 1 cut(s) | 322 |
| SduI | GDGCHC | 4 cut(s) | 66, 215, 390, 475 |
| SetI | ASST | 5 cut(s) | 66, 71, 112, 416, 500 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 395, 399 |
| Sse9I | AATT | 4 cut(s) | 99, 123, 241, 270 |
| SsiI | CCGC | 3 cut(s) | 95, 232, 355 |
| SspMI | CTAG | 1 cut(s) | 309 |
| SstI | GAGCTC | 1 cut(s) | 66 |
| StyD4I | CCNGG | 1 cut(s) | 320 |
| StyI | CCWWGG | 2 cut(s) | 45, 83 |
| TaaI | ACNGT | 1 cut(s) | 202 |
| TaqI | TCGA | 1 cut(s) | 290 |
| TasI | AATT | 4 cut(s) | 99, 123, 241, 270 |
| TatI | WGTACW | 1 cut(s) | 131 |
| TauI | GCSGC | 1 cut(s) | 97 |
| Tru1I | TTAA | 5 cut(s) | 252, 317, 341, 417, 434 |
| Tru9I | TTAA | 5 cut(s) | 252, 317, 341, 417, 434 |
| TseI | GCWGC | 2 cut(s) | 41, 220 |
| TspDTI | ATGAA | 4 cut(s) | 159, 396, 413, 467 |
| XapI | RAATTY | 1 cut(s) | 241 |
| XmiI | GTMKAC | 2 cut(s) | 197, 204 |
| XspI | CTAG | 1 cut(s) | 309 |