Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0017425

Physical Location & Seq

Genomic Coordinates Forward (+)

65436209 .. 65439219

Gene Structure 3011 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG486000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 252 bp

ATGCTTCGCACCCTTGAAGGAGATGTGCTTCATGGTCTTAATCTGGCTGAAGCTTCCTTGACAATTGCAGGCAAGTTCCTACTTATTTTCTGTCCAACTGATCTTATTGATCGAGACCTCATACTAGTAGATAAATATTCAAAAGGTTCATGTATCAACAGAGCCTACTCTTTCGAGTCATCACCGCGCCTTCCAGGCAGGACAAATCAAGTTGGAGCTTTGATTGATGCCGCAAAGGCAACTGGGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00510 ko00513 ko01100 map00510 map00513 map01100

Pfam Domains

Protein Families

Glyco_transf_4 Glycos_transf_1

Protein Analysis

83

Amino Acids

8.97

Weight (kDa)

5.73

Isoelectric Point (pI)

17.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017425)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0088641 RchiOBHm_Chr2g0173931 RchiOBHm_Chr3g0486691 RchiOBHm_Chr4g0402621
rosa_roxburghii	Rroxscaffold_1G00003230 Rroxscaffold_1G00019760 Rroxscaffold_2G00112610 Rroxscaffold_3G00223310 Rroxscaffold_3G00273670
rosa_rugosa	Rorug06G0360700.1
rosa_samantha	Rh4BG248900 Rh6BG480300 Rh6CG486000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	187
AciI	CCGC	2 cut(s)	185, 231
AcuI	CTGAAG	1 cut(s)	69
AgsI	TTSAA	2 cut(s)	17, 141
AhlI	ACTAGT	1 cut(s)	124
AjnI	CCWGG	1 cut(s)	193
AluBI	AGCT	2 cut(s)	53, 218
AluI	AGCT	2 cut(s)	53, 218
Alw26I	GTCTC	1 cut(s)	108
AspLEI	GCGC	1 cut(s)	189
AsuHPI	GGTGA	1 cut(s)	174
BciT130I	CCWGG	1 cut(s)	195
BcoDI	GTCTC	1 cut(s)	108
BcuI	ACTAGT	1 cut(s)	124
BfaI	CTAG	1 cut(s)	125
BglI	GCCNNNNNGGC	2 cut(s)	195, 236
BisI	GCNGC	1 cut(s)	231
BlsI	GCNGC	1 cut(s)	232
Bme1390I	CCNGG	1 cut(s)	195
BmrFI	CCNGG	1 cut(s)	195
BmrI	ACTGGG	1 cut(s)	252
BmsI	GCATC	1 cut(s)	217
BmuI	ACTGGG	1 cut(s)	252
BsaI	GGTCTC	1 cut(s)	108
Bse1I	ACTGG	1 cut(s)	247
BseBI	CCWGG	1 cut(s)	195
BseNI	ACTGG	1 cut(s)	247
Bsh1236I	CGCG	1 cut(s)	187
BsmAI	GTCTC	1 cut(s)	108
Bso31I	GGTCTC	1 cut(s)	108
Bsp143I	GATC	2 cut(s)	100, 109
BspACI	CCGC	2 cut(s)	185, 231
BspFNI	CGCG	1 cut(s)	187
BspTNI	GGTCTC	1 cut(s)	108
BsrI	ACTGG	1 cut(s)	247
BssMI	GATC	2 cut(s)	100, 109
Bst2UI	CCWGG	1 cut(s)	195
BstC8I	GCNNGC	1 cut(s)	70
BstFNI	CGCG	1 cut(s)	187
BstHHI	GCGC	1 cut(s)	189
BstKTI	GATC	2 cut(s)	103, 112
BstMAI	GTCTC	1 cut(s)	108
BstMBI	GATC	2 cut(s)	100, 109
BstMWI	GCNNNNNNNGC	2 cut(s)	195, 236
BstNI	CCWGG	1 cut(s)	195
BstSCI	CCNGG	1 cut(s)	193
BstUI	CGCG	1 cut(s)	187
Cac8I	GCNNGC	1 cut(s)	70
CfoI	GCGC	1 cut(s)	189
CviAII	CATG	2 cut(s)	32, 150
CviJI	RGCY	4 cut(s)	47, 53, 164, 218
CviKI_1	RGCY	4 cut(s)	47, 53, 164, 218
DpnI	GATC	2 cut(s)	102, 111
DpnII	GATC	2 cut(s)	100, 109
Eco31I	GGTCTC	1 cut(s)	108
Eco57I	CTGAAG	1 cut(s)	69
EcoRII	CCWGG	1 cut(s)	193
FaeI	CATG	2 cut(s)	35, 153
FaiI	YATR	3 cut(s)	33, 122, 151
FatI	CATG	2 cut(s)	31, 149
Fnu4HI	GCNGC	1 cut(s)	231
Fsp4HI	GCNGC	1 cut(s)	231
FspBI	CTAG	1 cut(s)	125
GlaI	GCGC	1 cut(s)	188
GluI	GCNGC	1 cut(s)	231
HhaI	GCGC	1 cut(s)	189
Hin1II	CATG	2 cut(s)	35, 153
Hin6I	GCGC	1 cut(s)	187
HinP1I	GCGC	1 cut(s)	187
HindIII	AAGCTT	1 cut(s)	51
HinfI	GANTC	1 cut(s)	176
HphI	GGTGA	1 cut(s)	174
Hpy188III	TCNNGA	1 cut(s)	113
HpyAV	CCTTC	2 cut(s)	11, 200
HpyCH4V	TGCA	1 cut(s)	68
HpyF10VI	GCNNNNNNNGC	2 cut(s)	195, 236
Hsp92II	CATG	2 cut(s)	35, 153
HspAI	GCGC	1 cut(s)	187
Kzo9I	GATC	2 cut(s)	100, 109
LmnI	GCTCC	1 cut(s)	215
LpnPI	CCDG	6 cut(s)	29, 54, 180, 184, 207, 228
LweI	GCATC	1 cut(s)	217
MaeI	CTAG	1 cut(s)	125
MalI	GATC	2 cut(s)	102, 111
MboI	GATC	2 cut(s)	100, 109
MfeI	CAATTG	1 cut(s)	63
MluCI	AATT	1 cut(s)	63
MlyI	GAGTC	1 cut(s)	185
MmeI	TCCRAC	2 cut(s)	119, 193
MnlI	CCTC	1 cut(s)	128
MseI	TTAA	1 cut(s)	39
MspR9I	CCNGG	1 cut(s)	195
MunI	CAATTG	1 cut(s)	63
MvaI	CCWGG	1 cut(s)	195
MvnI	CGCG	1 cut(s)	187
MwoI	GCNNNNNNNGC	2 cut(s)	195, 236
NdeII	GATC	2 cut(s)	100, 109
NlaIII	CATG	2 cut(s)	35, 153
PkrI	GCNGC	1 cut(s)	232
PleI	GAGTC	1 cut(s)	184
PpsI	GAGTC	1 cut(s)	184
Psp6I	CCWGG	1 cut(s)	193
PspGI	CCWGG	1 cut(s)	193
SaqAI	TTAA	1 cut(s)	39
SatI	GCNGC	1 cut(s)	231
Sau3AI	GATC	2 cut(s)	100, 109
SchI	GAGTC	1 cut(s)	185
ScrFI	CCNGG	1 cut(s)	195
SetI	ASST	4 cut(s)	55, 120, 148, 220
SfaNI	GCATC	1 cut(s)	217
SpeI	ACTAGT	1 cut(s)	124
Sse9I	AATT	1 cut(s)	63
SsiI	CCGC	2 cut(s)	185, 231
SspI	AATATT	1 cut(s)	137
SspMI	CTAG	1 cut(s)	125
StyD4I	CCNGG	1 cut(s)	193
TaqI	TCGA	2 cut(s)	112, 174
TasI	AATT	1 cut(s)	63
TauI	GCSGC	1 cut(s)	233
Tru1I	TTAA	1 cut(s)	39
Tru9I	TTAA	1 cut(s)	39
TspDTI	ATGAA	2 cut(s)	20, 138
XspI	CTAG	1 cut(s)	125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.