RchiOBHm_Chr3g0456371

protein UNUSUAL FLORAL

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Reverse (-)
5907762 .. 5909851
2090 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ42321

Sequence Viewer

Length: 1287 bp
ATGGATCCTCATTTTCATCGTCTCTCTGAAATCCCCTTACCCTTGTCATTTAGCAGTACCTACGCTGGTAGTAGTAGTAGTAGTGGATCTAATCATGATGATCCATGGATGGACCCTAGGATATGGAGGAAGCTCCCAACTCGGATTCTCGACCGCATTATTGCCTTTCTTCCACCACCGGCCTTCTTCCGATCTCGGTGTGTCTGCAGGAGATGGAATGGCCTGTTGTTCACCAACACCTTCCTTCAACTCTACCTCGATATCTTCCCACACCGTCGCCATTGGTTCCTCTTTTTCAAGGTCTACACCCAGAATCTCATTGATGACAACAACAACAACAGGGCTGAAGGGTACCTTTTCGATCCTTATGAACTCGTCTGGTACCGCCTTCCCTTTCCTTTGGTTCCACCATCTGGCTTCTGTCCAGCCGCTTCTTCAGGCGGACTGGTCTGTTGGATTTCGGATAACCCTGCTCCGAAAAACCTACTTCTCTCCAACCCGCTTTCGGGTACCTTAAACCAACTCCCTCGAACACTAACCTCAAGGTATCAACCCTCCATCGGCTTTACTGTCACCCCTACTTCCATAGACGTCACCCTTGCCGGAGATGACCTCATCAACAATGCCCTAGCTGTAAAGAACTCCAGCGCAGAAAGGTTCCGTGTGGATGGTACGGGCTGCTTTCTTCCCACATGGCAGATCACTTCTCCTCTTCCCAGACTCTGCAACTTTGAGTCGGCTGGTAGAATGGTTCACATTAATGGAAGGCTCTACAACATGAGCTACCACCCTTTCAACGTCGCGACCTATGACGTGGAAACAGCCATTTGGTGGGATATTCAGCCACCGATGAAGAGGTTCCTGAAGTGTCCTAGCGTGGTAGAGAGTGGCACTGGGAAGCTTCTGCTGGTTGCGGCTATTGAGAAGAGGTCGCTGATCGTGCCGAAAAGCTTGAGGGTCTGGAGCTTGCAGGAAGGAACTACGTGGGTGGAGATTGAGAGGATGCCTCAACTGCTTTATGATCGGTTCGGTGCGGAGATGGAGTCCTGTGGGAATGGGTTTCACTGCGTTGGCCATGGAGAGTTCATTGTGTTCATGATTCCGGGGAGTTCTCGTCATTTGGGTGTGTTGTTTAATATGAACACCAAACTGTGGAAGTGTATGCCTCCCTGTCCTTTTGTTGGTATGGGTGATCTGAGCCGTGGTTTTGCTTATGAGCCCCGGCTTGCTACTCCGGTCACTTCGCTTCTGAATTATCAGTTCCCTGCTGCTCCATTTCCAGCTTGA

Protein Analysis

428

Amino Acids

48.5

Weight (kDa)

8.72

Isoelectric Point (pI)

47.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 42 - 79 2.2e-06 F-box-like
Beta-prop_KIB1-4 PF03478 128 - 335 2.4e-07 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0017683)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g06880 FvH4_6g06880 FvH4_6g06880
rosa_chinensis RchiOBHm_Chr3g0456371
rosa_laevigata RLG00000025308
rosa_multiflora Rmu_sc0020202.1_g000002
rosa_roxburghii Rroxscaffold_6G00422770
rosa_rugosa Rorug03G0012700
rosa_samantha Rh3BG075100 Rh3CG074700 Rh3DG076500
rosa_wichuraiana Rw3G006270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 594
Acc65I GGTACC 3 cut(s) 351, 381, 509
AccB1I GGYRCC 3 cut(s) 351, 381, 509
AccB7I CCANNNNNTGG 3 cut(s) 413, 831, 1152
AccI GTMKAC 1 cut(s) 303
AccII CGCG 1 cut(s) 803
AciI CCGC 7 cut(s) 154, 385, 429, 441, 500, 914, 1034
AclWI GGATC 4 cut(s) 12, 94, 95, 356
AcoI YGGCCR 1 cut(s) 1072
AcuI CTGAAG 3 cut(s) 366, 420, 884
AcyI GRCGYC 1 cut(s) 591
AfaI GTAC 5 cut(s) 58, 353, 383, 511, 673
AfiI CCNNNNNNNGG 7 cut(s) 413, 505, 506, 560, 831, 1152, 1181
AgsI TTSAA 3 cut(s) 248, 298, 796
AjiI CACGTC 1 cut(s) 814
AluBI AGCT 7 cut(s) 133, 632, 783, 901, 951, 966, 1283
AluI AGCT 7 cut(s) 133, 632, 783, 901, 951, 966, 1283
Alw26I GTCTC 1 cut(s) 26
AlwI GGATC 4 cut(s) 12, 94, 95, 356
AlwNI CAGNNNCTG 1 cut(s) 723
AoxI GGCC 3 cut(s) 180, 220, 1072
ApeKI GCWGC 2 cut(s) 678, 1268
AseI ATTAAT 1 cut(s) 759
Asp700I GAANNNNTTC 1 cut(s) 857
Asp718I GGTACC 3 cut(s) 351, 381, 509
AspA2I CCTAGG 1 cut(s) 116
AspLEI GCGC 1 cut(s) 650
AspS9I GGNCC 1 cut(s) 112
AsuC2I CCSGG 2 cut(s) 1104, 1222
AsuHPI GGTGA 4 cut(s) 223, 565, 586, 1202
AvaII GGWCC 1 cut(s) 112
AvrII CCTAGG 1 cut(s) 116
BalI TGGCCA 1 cut(s) 1074
BamHI GGATCC 1 cut(s) 4
BanI GGYRCC 3 cut(s) 351, 381, 509
BanII GRGCYC 1 cut(s) 1221
BbvI GCAGC 2 cut(s) 665, 1255
BccI CCATC 6 cut(s) 103, 207, 418, 566, 662, 1033
BceAI ACGGC 1 cut(s) 1185
BcnI CCSGG 2 cut(s) 1104, 1222
BcoDI GTCTC 1 cut(s) 26
BfaI CTAG 3 cut(s) 117, 629, 873
BfmI CTRYAG 1 cut(s) 205
BisI GCNGC 4 cut(s) 429, 679, 915, 1269
BlnI CCTAGG 1 cut(s) 116
BlsI GCNGC 4 cut(s) 430, 680, 916, 1270
Bme1390I CCNGG 2 cut(s) 1104, 1222
Bme18I GGWCC 1 cut(s) 112
BmgBI CACGTC 1 cut(s) 814
BmgT120I GGNCC 1 cut(s) 112
BmiI GGNNCC 9 cut(s) 6, 114, 287, 353, 383, 405, 511, 659, 860
BmrFI CCNGG 2 cut(s) 1104, 1222
BmrI ACTGGG 1 cut(s) 903
BmsI GCATC 1 cut(s) 993
BmuI ACTGGG 1 cut(s) 903
BplI GAGNNNNNCTC 4 cut(s) 597, 629, 991, 1023
BpmI CTGGAG 2 cut(s) 628, 982
BpuEI CTTGAG 2 cut(s) 526, 973
BpuMI CCSGG 2 cut(s) 1104, 1222
BsaAI YACGTR 1 cut(s) 984
BsaHI GRCGYC 1 cut(s) 591
BsaJI CCNNGG 6 cut(s) 104, 116, 1075, 1103, 1201, 1220
BsaWI WCCGGW 1 cut(s) 1234
BsaXI ACNNNNNCTCC 4 cut(s) 1028, 1058, 1099, 1129
Bsc4I CCNNNNNNNGG 7 cut(s) 413, 505, 506, 560, 831, 1152, 1181
Bse118I RCCGGY 1 cut(s) 178
Bse1I ACTGG 2 cut(s) 450, 898
BseDI CCNNGG 6 cut(s) 104, 116, 1075, 1103, 1201, 1220
BseGI GGATG 3 cut(s) 114, 673, 1008
BseLI CCNNNNNNNGG 7 cut(s) 413, 505, 506, 560, 831, 1152, 1181
BseMII CTCAG 1 cut(s) 1187
BseNI ACTGG 2 cut(s) 450, 898
BseRI GAGGAG 1 cut(s) 699
BseXI GCAGC 2 cut(s) 665, 1255
Bsh1236I CGCG 1 cut(s) 803
Bsh1285I CGRYCG 1 cut(s) 154
BshFI GGCC 3 cut(s) 182, 222, 1074
BshNI GGYRCC 3 cut(s) 351, 381, 509
BsiEI CGRYCG 1 cut(s) 154
BsiSI CCGG 5 cut(s) 179, 603, 1103, 1222, 1235
BslI CCNNNNNNNGG 7 cut(s) 413, 505, 506, 560, 831, 1152, 1181
BsmAI GTCTC 1 cut(s) 26
BsmBI CGTCTC 1 cut(s) 26
BsnI GGCC 3 cut(s) 182, 222, 1074
Bsp1286I GDGCHC 1 cut(s) 1221
Bsp143I GATC 9 cut(s) 4, 86, 100, 191, 361, 699, 936, 1021, 1192
Bsp19I CCATGG 2 cut(s) 104, 1075
Bsp68I TCGCGA 1 cut(s) 803
BspACI CCGC 7 cut(s) 154, 385, 429, 441, 500, 914, 1034
BspANI GGCC 3 cut(s) 182, 222, 1074
BspCNI CTCAG 1 cut(s) 1188
BspFNI CGCG 1 cut(s) 803
BspHI TCATGA 2 cut(s) 94, 1095
BspLI GGNNCC 9 cut(s) 6, 114, 287, 353, 383, 405, 511, 659, 860
BspMAI CTGCAG 1 cut(s) 209
BspPI GGATC 4 cut(s) 12, 94, 95, 356
BspT107I GGYRCC 3 cut(s) 351, 381, 509
BsrFI RCCGGY 1 cut(s) 178
BsrI ACTGG 2 cut(s) 450, 898
BssAI RCCGGY 1 cut(s) 178
BssECI CCNNGG 6 cut(s) 104, 116, 1075, 1103, 1201, 1220
BssMI GATC 9 cut(s) 4, 86, 100, 191, 361, 699, 936, 1021, 1192
BssNI GRCGYC 1 cut(s) 591
BssT1I CCWWGG 3 cut(s) 104, 116, 1075
Bst4CI ACNGT 3 cut(s) 275, 571, 1152
Bst6I CTCTTC 3 cut(s) 717, 848, 920
BstACI GRCGYC 1 cut(s) 591
BstBAI YACGTR 1 cut(s) 984
BstC8I GCNNGC 2 cut(s) 968, 1227
BstDEI CTNAG 1 cut(s) 1196
BstDSI CCRYGG 3 cut(s) 104, 1075, 1201
BstF5I GGATG 3 cut(s) 114, 673, 1008
BstFNI CGCG 1 cut(s) 803
BstHHI GCGC 1 cut(s) 650
BstKTI GATC 9 cut(s) 7, 89, 103, 194, 364, 702, 939, 1024, 1195
BstMAI GTCTC 1 cut(s) 26
BstMBI GATC 9 cut(s) 4, 86, 100, 191, 361, 699, 936, 1021, 1192
BstMCI CGRYCG 1 cut(s) 154
BstMWI GCNNNNNNNGC 2 cut(s) 940, 1012
BstSCI CCNGG 2 cut(s) 1102, 1220
BstSFI CTRYAG 1 cut(s) 205
BstUI CGCG 1 cut(s) 803
BstV1I GCAGC 2 cut(s) 665, 1255
BstX2I RGATCY 2 cut(s) 4, 86
BstYI RGATCY 2 cut(s) 4, 86
BsuRI GGCC 3 cut(s) 182, 222, 1074
BtgI CCRYGG 3 cut(s) 104, 1075, 1201
BtrI CACGTC 1 cut(s) 814
BtsCI GGATG 3 cut(s) 114, 673, 1008
BtsI GCAGTG 1 cut(s) 1063
BtsIMutI CAGTG 2 cut(s) 891, 1063
BtuMI TCGCGA 1 cut(s) 803
Cac8I GCNNGC 2 cut(s) 968, 1227
CaiI CAGNNNCTG 1 cut(s) 723
CciI TCATGA 2 cut(s) 94, 1095
CfoI GCGC 1 cut(s) 650
Cfr10I RCCGGY 1 cut(s) 178
Cfr13I GGNCC 1 cut(s) 112
Csp6I GTAC 5 cut(s) 57, 352, 382, 510, 672
CviAII CATG 6 cut(s) 95, 105, 693, 778, 1076, 1096
CviQI GTAC 5 cut(s) 57, 352, 382, 510, 672
DdeI CTNAG 1 cut(s) 1196
DpnI GATC 9 cut(s) 6, 88, 102, 193, 363, 701, 938, 1023, 1194
DpnII GATC 9 cut(s) 4, 86, 100, 191, 361, 699, 936, 1021, 1192
EaeI YGGCCR 1 cut(s) 1072
Eam1104I CTCTTC 3 cut(s) 717, 848, 920
EarI CTCTTC 3 cut(s) 717, 848, 920
EciI GGCGGA 1 cut(s) 456
Eco130I CCWWGG 3 cut(s) 104, 116, 1075
Eco24I GRGCYC 1 cut(s) 1221
Eco32I GATATC 1 cut(s) 262
Eco47I GGWCC 1 cut(s) 112
Eco57I CTGAAG 3 cut(s) 366, 420, 884
EcoRV GATATC 1 cut(s) 262
EcoT14I CCWWGG 3 cut(s) 104, 116, 1075
EcoT38I GRGCYC 1 cut(s) 1221
ErhI CCWWGG 3 cut(s) 104, 116, 1075
Esp3I CGTCTC 1 cut(s) 26
FaeI CATG 6 cut(s) 98, 108, 696, 781, 1079, 1099
FalI AAGNNNNNCTT 2 cut(s) 339, 371
FatI CATG 6 cut(s) 94, 104, 692, 777, 1075, 1095
FauI CCCGC 1 cut(s) 507
FblI GTMKAC 1 cut(s) 303
Fnu4HI GCNGC 4 cut(s) 429, 679, 915, 1269
FokI GGATG 3 cut(s) 121, 680, 1015
FriOI GRGCYC 1 cut(s) 1221
Fsp4HI GCNGC 4 cut(s) 429, 679, 915, 1269
FspBI CTAG 3 cut(s) 117, 629, 873
GlaI GCGC 1 cut(s) 649
GluI GCNGC 4 cut(s) 429, 679, 915, 1269
GsuI CTGGAG 2 cut(s) 628, 982
HaeIII GGCC 3 cut(s) 182, 222, 1074
HapII CCGG 5 cut(s) 179, 603, 1103, 1222, 1235
HhaI GCGC 1 cut(s) 650
Hin1I GRCGYC 1 cut(s) 591
Hin1II CATG 6 cut(s) 98, 108, 696, 781, 1079, 1099
Hin6I GCGC 1 cut(s) 648
HinP1I GCGC 1 cut(s) 648
HindIII AAGCTT 2 cut(s) 899, 949
HinfI GANTC 6 cut(s) 145, 313, 720, 734, 1043, 1099
HpaII CCGG 5 cut(s) 179, 603, 1103, 1222, 1235
HphI GGTGA 4 cut(s) 223, 565, 586, 1202
Hpy166II GTNNAC 3 cut(s) 231, 304, 754
Hpy188I TCNGA 7 cut(s) 28, 144, 191, 463, 477, 1197, 1251
Hpy188III TCNNGA 6 cut(s) 95, 149, 802, 862, 961, 1096
Hpy8I GTNNAC 3 cut(s) 231, 304, 754
Hpy99I CGWCG 2 cut(s) 279, 803
HpyAV CCTTC 7 cut(s) 193, 250, 254, 341, 398, 759, 968
HpyCH4III ACNGT 3 cut(s) 275, 571, 1152
HpyCH4IV ACGT 4 cut(s) 591, 798, 813, 983
HpyCH4V TGCA 3 cut(s) 207, 726, 970
HpyF10VI GCNNNNNNNGC 2 cut(s) 940, 1012
HpyF3I CTNAG 1 cut(s) 1196
HpySE526I ACGT 4 cut(s) 591, 798, 813, 983
Hsp92I GRCGYC 1 cut(s) 591
Hsp92II CATG 6 cut(s) 98, 108, 696, 781, 1079, 1099
HspAI GCGC 1 cut(s) 648
KpnI GGTACC 3 cut(s) 355, 385, 513
Kzo9I GATC 9 cut(s) 4, 86, 100, 191, 361, 699, 936, 1021, 1192
LmnI GCTCC 4 cut(s) 138, 478, 963, 1276
Lsp1109I GCAGC 2 cut(s) 665, 1255
LweI GCATC 1 cut(s) 993
MaeI CTAG 3 cut(s) 117, 629, 873
MaeII ACGT 4 cut(s) 591, 798, 813, 983
MaeIII GTNAC 3 cut(s) 571, 592, 1237
MalI GATC 9 cut(s) 6, 88, 102, 193, 363, 701, 938, 1023, 1194
MboI GATC 9 cut(s) 4, 86, 100, 191, 361, 699, 936, 1021, 1192
MboII GAAGA 8 cut(s) 161, 178, 256, 426, 677, 704, 865, 937
MflI RGATCY 2 cut(s) 4, 86
MhlI GDGCHC 1 cut(s) 1221
MlsI TGGCCA 1 cut(s) 1074
MluCI AATT 1 cut(s) 1252
MluNI TGGCCA 1 cut(s) 1074
MlyI GAGTC 3 cut(s) 714, 743, 1052
MmeI TCCRAC 2 cut(s) 434, 519
Mox20I TGGCCA 1 cut(s) 1074
MroXI GAANNNNTTC 1 cut(s) 857
MscI TGGCCA 1 cut(s) 1074
MseI TTAA 3 cut(s) 515, 759, 1134
MslI CAYNNNNRTG 2 cut(s) 759, 1122
Msp20I TGGCCA 1 cut(s) 1074
MspI CCGG 5 cut(s) 179, 603, 1103, 1222, 1235
MspR9I CCNGG 2 cut(s) 1104, 1222
MvnI CGCG 1 cut(s) 803
MwoI GCNNNNNNNGC 2 cut(s) 940, 1012
NciI CCSGG 2 cut(s) 1104, 1222
NcoI CCATGG 2 cut(s) 104, 1075
NdeII GATC 9 cut(s) 4, 86, 100, 191, 361, 699, 936, 1021, 1192
NlaIII CATG 6 cut(s) 98, 108, 696, 781, 1079, 1099
NlaIV GGNNCC 9 cut(s) 6, 114, 287, 353, 383, 405, 511, 659, 860
NmuCI GTSAC 3 cut(s) 571, 592, 1237
NruI TCGCGA 1 cut(s) 803
PagI TCATGA 2 cut(s) 94, 1095
PdmI GAANNNNTTC 1 cut(s) 857
PfeI GAWTC 3 cut(s) 145, 313, 1099
PflMI CCANNNNNTGG 3 cut(s) 413, 831, 1152
PkrI GCNGC 4 cut(s) 430, 680, 916, 1270
PleI GAGTC 3 cut(s) 714, 742, 1051
PpsI GAGTC 3 cut(s) 714, 742, 1051
Ppu21I YACGTR 1 cut(s) 984
PshBI ATTAAT 1 cut(s) 759
PspN4I GGNNCC 9 cut(s) 6, 114, 287, 353, 383, 405, 511, 659, 860
PspPI GGNCC 1 cut(s) 112
PstI CTGCAG 1 cut(s) 209
PstNI CAGNNNCTG 1 cut(s) 723
PsuI RGATCY 2 cut(s) 4, 86
RruI TCGCGA 1 cut(s) 803
RsaI GTAC 5 cut(s) 58, 353, 383, 511, 673
RsaNI GTAC 5 cut(s) 57, 352, 382, 510, 672
RseI CAYNNNNRTG 2 cut(s) 759, 1122
SaqAI TTAA 3 cut(s) 515, 759, 1134
SatI GCNGC 4 cut(s) 429, 679, 915, 1269
Sau3AI GATC 9 cut(s) 4, 86, 100, 191, 361, 699, 936, 1021, 1192
Sau96I GGNCC 1 cut(s) 112
SchI GAGTC 3 cut(s) 714, 743, 1052
ScrFI CCNGG 2 cut(s) 1104, 1222
SduI GDGCHC 1 cut(s) 1221
SfaNI GCATC 1 cut(s) 993
SfcI CTRYAG 1 cut(s) 205
SinI GGWCC 1 cut(s) 112
SmiMI CAYNNNNRTG 2 cut(s) 759, 1122
SmlI CTYRAG 2 cut(s) 541, 952
SmoI CTYRAG 2 cut(s) 541, 952
Sse9I AATT 1 cut(s) 1252
SsiI CCGC 7 cut(s) 154, 385, 429, 441, 500, 914, 1034
SspMI CTAG 3 cut(s) 117, 629, 873
StyD4I CCNGG 2 cut(s) 1102, 1220
StyI CCWWGG 3 cut(s) 104, 116, 1075
TaaI ACNGT 3 cut(s) 275, 571, 1152
TaiI ACGT 4 cut(s) 594, 801, 816, 986
TaqI TCGA 4 cut(s) 150, 258, 360, 529
TasI AATT 1 cut(s) 1252
TauI GCSGC 2 cut(s) 431, 917
TfiI GAWTC 3 cut(s) 145, 313, 1099
Tru1I TTAA 3 cut(s) 515, 759, 1134
Tru9I TTAA 3 cut(s) 515, 759, 1134
TscAI CASTG 2 cut(s) 898, 1070
TseFI GTSAC 3 cut(s) 571, 592, 1237
TseI GCWGC 2 cut(s) 678, 1268
Tsp45I GTSAC 3 cut(s) 571, 592, 1237
TspDTI ATGAA 6 cut(s) 5, 384, 866, 1075, 1084, 1154
TspGWI ACGGA 1 cut(s) 650
TspRI CASTG 2 cut(s) 898, 1070
Van91I CCANNNNNTGG 3 cut(s) 413, 831, 1152
VpaK11BI GGWCC 1 cut(s) 112
VspI ATTAAT 1 cut(s) 759
XmaJI CCTAGG 1 cut(s) 116
XmiI GTMKAC 1 cut(s) 303
XmnI GAANNNNTTC 1 cut(s) 857
XspI CTAG 3 cut(s) 117, 629, 873
ZraI GACGTC 1 cut(s) 592
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.