Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0017683

Physical Location & Seq

Genomic Coordinates Forward (+)

43598278 .. 43599558

Gene Structure 1281 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00422770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1281 bp

ATGGATCCTCATTTTCACCGTCTCTCTGAAATCCCCTTACCCTTGTCATTTAGCAGTACCTACGCTGGTAGTAGTAGTAGTGGATCTAATCATGATGATCCATGGATGGACCCTAGGATATGGAGGAAGCTCCCAACTCGGATTCTCGACCGCATTATCGCCTTTCTTCCACCACCGGCCTTCTTCCGATCTCGGTGTGTCTGCAGGAGATGGAATGGCCTGTTGTTCACCAACACCTTCCTTCAACTCTACCTCGATATCTTCCCACACCGCCGCCATTGGTTCCTCTTTTTCAAGGCCGACACCCAGAATCTCATTGATGACAACAACAACAGGGCTGAAGGGTACCTTTTCGATCCTTATGAACTCGTCTGGTACCGCCTTCCCTTTCCTTTGGTTCCACCATCTGGCTTCTCTCCAGCCGCTTCTTCAGGCGGACTGGTCTGTTGGATTTCGGATAACCCTGCTCCGAAAACCCTACTTCTCTCCAACCCGCTTTCGGGTACCTTAAACCAACTCCCTCCAACCCTAACCTCAAGGTATCAACCCTCCATCGGCTTTACTGTCACCCCTACTTCCATAGATGTCACCCTTGCCGGAGATGACCTCATCAACAATGCCCTAGCTGTAAAGAACTCCACCGCAGAAAGGTTCCGCGTGGATGGTACGGGCTGCTTTCTTCCCACATGGCAGATCACTTCTCCTCTTCCCAGACTCTGCAACTTTGAGTCGGCTGGTAGAATGGTTCATATTAATGGAAGGCTCTACAACATGAGCTACCACCCTTTCAACGTCGCGACCTATGACGTGGAAACAGCCAGTTGGTGGGATATTCAGCCACCGATGAAGAGGTTCCTGAAGTGTCCTAGCGTGGTAGAGAGTGGCACAGGGAAGCTTCTGCTGGTTGCGGCTATTGAGAAGAGGTCGCTGATCGTGCCGAAAAGCTTGAGGGTCTGGAGCTTGCAGGAAGGCACTACGTGGGTGGAGATTGAGAGGATGCCTCAACTGCTTTATGATCGGTTCGGTGCGGAGATGGAGTCCTGTGGGAATGGGTTTCACTGCGTTGGCCATGGAGAGTTCATTGTGTTCATGATTCCGGGGAGTTCTCGTCATTTGGGCGTGTTGTTTAATATGAACACCAAACTGTGGAAGTGCATGCCTCCCTGTCCTTTTGTTGGTATGGGTGATCTGAGCCGTGGTTTTGCTTATGAGCCCCGGCTTGCTACTCCGGTCACTTCGCTTCTGAATTATCAGTTCCCTGCTGCTCCATTTCCGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0006355 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009889 GO:0009987 GO:0010468 GO:0010498 GO:0010556 GO:0016567 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031146 GO:0031323 GO:0031326 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051603 GO:0060255 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

426

Amino Acids

48.12

Weight (kDa)

8.49

Isoelectric Point (pI)

48.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	41 - 78	2.2e-06	F-box-like
Beta-prop_KIB1-4	PF03478	126 - 333	1.5e-07	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017683)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g06880 FvH4_6g06880 FvH4_6g06880
rosa_chinensis	RchiOBHm_Chr3g0456371
rosa_laevigata	RLG00000025308
rosa_multiflora	Rmu_sc0020202.1_g000002
rosa_roxburghii	Rroxscaffold_6G00422770
rosa_rugosa	Rorug03G0012700
rosa_samantha	Rh3BG075100 Rh3CG074700 Rh3DG076500
rosa_wichuraiana	Rw3G006270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	3 cut(s)	345, 375, 503
AccB1I	GGYRCC	3 cut(s)	345, 375, 503
AccB7I	CCANNNNNTGG	3 cut(s)	407, 825, 1146
AccII	CGCG	2 cut(s)	657, 797
AclWI	GGATC	4 cut(s)	12, 91, 92, 350
AcoI	YGGCCR	1 cut(s)	1066
AcuI	CTGAAG	3 cut(s)	360, 414, 878
AdeI	CACNNNGTG	1 cut(s)	978
AfaI	GTAC	5 cut(s)	58, 347, 377, 505, 667
AfiI	CCNNNNNNNGG	8 cut(s)	407, 499, 500, 554, 648, 825, 1146, 1175
AgsI	TTSAA	3 cut(s)	245, 295, 790
AjiI	CACGTC	1 cut(s)	808
AluBI	AGCT	6 cut(s)	130, 626, 777, 895, 945, 960
AluI	AGCT	6 cut(s)	130, 626, 777, 895, 945, 960
Alw26I	GTCTC	1 cut(s)	26
AlwI	GGATC	4 cut(s)	12, 91, 92, 350
AlwNI	CAGNNNCTG	1 cut(s)	717
AoxI	GGCC	4 cut(s)	177, 217, 297, 1066
ApeKI	GCWGC	2 cut(s)	672, 1262
AseI	ATTAAT	1 cut(s)	753
Asp700I	GAANNNNTTC	1 cut(s)	851
Asp718I	GGTACC	3 cut(s)	345, 375, 503
AspA2I	CCTAGG	1 cut(s)	113
AspS9I	GGNCC	1 cut(s)	109
AsuC2I	CCSGG	2 cut(s)	1098, 1216
AsuHPI	GGTGA	5 cut(s)	8, 220, 559, 580, 1196
AvaII	GGWCC	1 cut(s)	109
AvrII	CCTAGG	1 cut(s)	113
BalI	TGGCCA	1 cut(s)	1068
BamHI	GGATCC	1 cut(s)	4
BanI	GGYRCC	3 cut(s)	345, 375, 503
BanII	GRGCYC	1 cut(s)	1215
BbvI	GCAGC	2 cut(s)	659, 1249
BccI	CCATC	6 cut(s)	100, 204, 412, 560, 656, 1027
BceAI	ACGGC	1 cut(s)	1179
BcnI	CCSGG	2 cut(s)	1098, 1216
BcoDI	GTCTC	1 cut(s)	26
BfaI	CTAG	3 cut(s)	114, 623, 867
BfmI	CTRYAG	1 cut(s)	202
BisI	GCNGC	5 cut(s)	274, 423, 673, 909, 1263
BlnI	CCTAGG	1 cut(s)	113
BlsI	GCNGC	5 cut(s)	275, 424, 674, 910, 1264
Bme1390I	CCNGG	2 cut(s)	1098, 1216
Bme18I	GGWCC	1 cut(s)	109
BmgBI	CACGTC	1 cut(s)	808
BmgT120I	GGNCC	1 cut(s)	109
BmiI	GGNNCC	9 cut(s)	6, 111, 284, 347, 377, 399, 505, 653, 854
BmrFI	CCNGG	2 cut(s)	1098, 1216
BmsI	GCATC	1 cut(s)	987
BplI	GAGNNNNNCTC	4 cut(s)	591, 623, 985, 1017
BpmI	CTGGAG	2 cut(s)	402, 976
BpuEI	CTTGAG	2 cut(s)	520, 967
BpuMI	CCSGG	2 cut(s)	1098, 1216
BsaAI	YACGTR	1 cut(s)	978
BsaJI	CCNNGG	6 cut(s)	101, 113, 1069, 1097, 1195, 1214
BsaWI	WCCGGW	1 cut(s)	1228
BsaXI	ACNNNNNCTCC	4 cut(s)	1022, 1052, 1093, 1123
Bsc4I	CCNNNNNNNGG	8 cut(s)	407, 499, 500, 554, 648, 825, 1146, 1175
Bse118I	RCCGGY	1 cut(s)	175
Bse1I	ACTGG	2 cut(s)	444, 819
BseDI	CCNNGG	6 cut(s)	101, 113, 1069, 1097, 1195, 1214
BseGI	GGATG	3 cut(s)	111, 667, 1002
BseLI	CCNNNNNNNGG	8 cut(s)	407, 499, 500, 554, 648, 825, 1146, 1175
BseMII	CTCAG	1 cut(s)	1181
BseNI	ACTGG	2 cut(s)	444, 819
BseRI	GAGGAG	1 cut(s)	693
BseXI	GCAGC	2 cut(s)	659, 1249
Bsh1236I	CGCG	2 cut(s)	657, 797
Bsh1285I	CGRYCG	1 cut(s)	151
BshFI	GGCC	4 cut(s)	179, 219, 299, 1068
BshNI	GGYRCC	3 cut(s)	345, 375, 503
BsiEI	CGRYCG	1 cut(s)	151
BsiSI	CCGG	6 cut(s)	176, 597, 1097, 1216, 1229, 1274
BslI	CCNNNNNNNGG	8 cut(s)	407, 499, 500, 554, 648, 825, 1146, 1175
BsmAI	GTCTC	1 cut(s)	26
BsmBI	CGTCTC	1 cut(s)	26
BsnI	GGCC	4 cut(s)	179, 219, 299, 1068
Bsp1286I	GDGCHC	1 cut(s)	1215
Bsp143I	GATC	9 cut(s)	4, 83, 97, 188, 355, 693, 930, 1015, 1186
Bsp19I	CCATGG	2 cut(s)	101, 1069
Bsp68I	TCGCGA	1 cut(s)	797
BspANI	GGCC	4 cut(s)	179, 219, 299, 1068
BspCNI	CTCAG	1 cut(s)	1182
BspFNI	CGCG	2 cut(s)	657, 797
BspHI	TCATGA	2 cut(s)	91, 1089
BspLI	GGNNCC	9 cut(s)	6, 111, 284, 347, 377, 399, 505, 653, 854
BspMAI	CTGCAG	1 cut(s)	206
BspPI	GGATC	4 cut(s)	12, 91, 92, 350
BspT107I	GGYRCC	3 cut(s)	345, 375, 503
BsrFI	RCCGGY	1 cut(s)	175
BsrI	ACTGG	2 cut(s)	444, 819
BssAI	RCCGGY	1 cut(s)	175
BssECI	CCNNGG	6 cut(s)	101, 113, 1069, 1097, 1195, 1214
BssMI	GATC	9 cut(s)	4, 83, 97, 188, 355, 693, 930, 1015, 1186
BssT1I	CCWWGG	3 cut(s)	101, 113, 1069
Bst4CI	ACNGT	3 cut(s)	20, 565, 1146
Bst6I	CTCTTC	3 cut(s)	711, 842, 914
BstBAI	YACGTR	1 cut(s)	978
BstC8I	GCNNGC	3 cut(s)	962, 1157, 1221
BstDEI	CTNAG	1 cut(s)	1190
BstDSI	CCRYGG	3 cut(s)	101, 1069, 1195
BstF5I	GGATG	3 cut(s)	111, 667, 1002
BstFNI	CGCG	2 cut(s)	657, 797
BstKTI	GATC	9 cut(s)	7, 86, 100, 191, 358, 696, 933, 1018, 1189
BstMAI	GTCTC	1 cut(s)	26
BstMBI	GATC	9 cut(s)	4, 83, 97, 188, 355, 693, 930, 1015, 1186
BstMCI	CGRYCG	1 cut(s)	151
BstMWI	GCNNNNNNNGC	2 cut(s)	934, 1006
BstNSI	RCATGY	1 cut(s)	1159
BstSCI	CCNGG	2 cut(s)	1096, 1214
BstSFI	CTRYAG	1 cut(s)	202
BstUI	CGCG	2 cut(s)	657, 797
BstV1I	GCAGC	2 cut(s)	659, 1249
BstX2I	RGATCY	2 cut(s)	4, 83
BstYI	RGATCY	2 cut(s)	4, 83
BsuRI	GGCC	4 cut(s)	179, 219, 299, 1068
BtgI	CCRYGG	3 cut(s)	101, 1069, 1195
BtrI	CACGTC	1 cut(s)	808
BtsCI	GGATG	3 cut(s)	111, 667, 1002
BtsI	GCAGTG	1 cut(s)	1057
BtsIMutI	CAGTG	1 cut(s)	1057
BtuMI	TCGCGA	1 cut(s)	797
Cac8I	GCNNGC	3 cut(s)	962, 1157, 1221
CaiI	CAGNNNCTG	1 cut(s)	717
CciI	TCATGA	2 cut(s)	91, 1089
Cfr10I	RCCGGY	1 cut(s)	175
Cfr13I	GGNCC	1 cut(s)	109
Csp6I	GTAC	5 cut(s)	57, 346, 376, 504, 666
CviAII	CATG	7 cut(s)	92, 102, 687, 772, 1070, 1090, 1156
CviQI	GTAC	5 cut(s)	57, 346, 376, 504, 666
DdeI	CTNAG	1 cut(s)	1190
DpnI	GATC	9 cut(s)	6, 85, 99, 190, 357, 695, 932, 1017, 1188
DpnII	GATC	9 cut(s)	4, 83, 97, 188, 355, 693, 930, 1015, 1186
DraIII	CACNNNGTG	1 cut(s)	978
EaeI	YGGCCR	1 cut(s)	1066
Eam1104I	CTCTTC	3 cut(s)	711, 842, 914
EarI	CTCTTC	3 cut(s)	711, 842, 914
EciI	GGCGGA	1 cut(s)	450
Eco130I	CCWWGG	3 cut(s)	101, 113, 1069
Eco24I	GRGCYC	1 cut(s)	1215
Eco32I	GATATC	1 cut(s)	259
Eco47I	GGWCC	1 cut(s)	109
Eco57I	CTGAAG	3 cut(s)	360, 414, 878
EcoRV	GATATC	1 cut(s)	259
EcoT14I	CCWWGG	3 cut(s)	101, 113, 1069
EcoT38I	GRGCYC	1 cut(s)	1215
ErhI	CCWWGG	3 cut(s)	101, 113, 1069
Esp3I	CGTCTC	1 cut(s)	26
FaeI	CATG	7 cut(s)	95, 105, 690, 775, 1073, 1093, 1159
FalI	AAGNNNNNCTT	2 cut(s)	333, 365
FatI	CATG	7 cut(s)	91, 101, 686, 771, 1069, 1089, 1155
FauI	CCCGC	1 cut(s)	501
Fnu4HI	GCNGC	5 cut(s)	274, 423, 673, 909, 1263
FokI	GGATG	3 cut(s)	118, 674, 1009
FriOI	GRGCYC	1 cut(s)	1215
Fsp4HI	GCNGC	5 cut(s)	274, 423, 673, 909, 1263
FspBI	CTAG	3 cut(s)	114, 623, 867
GluI	GCNGC	5 cut(s)	274, 423, 673, 909, 1263
GsuI	CTGGAG	2 cut(s)	402, 976
HaeIII	GGCC	4 cut(s)	179, 219, 299, 1068
HapII	CCGG	6 cut(s)	176, 597, 1097, 1216, 1229, 1274
Hin1II	CATG	7 cut(s)	95, 105, 690, 775, 1073, 1093, 1159
HindIII	AAGCTT	2 cut(s)	893, 943
HinfI	GANTC	6 cut(s)	142, 310, 714, 728, 1037, 1093
HpaII	CCGG	6 cut(s)	176, 597, 1097, 1216, 1229, 1274
HphI	GGTGA	5 cut(s)	8, 220, 559, 580, 1196
Hpy166II	GTNNAC	1 cut(s)	228
Hpy188I	TCNGA	7 cut(s)	28, 141, 188, 457, 471, 1191, 1245
Hpy188III	TCNNGA	6 cut(s)	92, 146, 796, 856, 955, 1090
Hpy8I	GTNNAC	1 cut(s)	228
Hpy99I	CGWCG	1 cut(s)	797
HpyAV	CCTTC	7 cut(s)	190, 247, 251, 335, 392, 753, 962
HpyCH4III	ACNGT	3 cut(s)	20, 565, 1146
HpyCH4IV	ACGT	3 cut(s)	792, 807, 977
HpyCH4V	TGCA	4 cut(s)	204, 720, 964, 1155
HpyF10VI	GCNNNNNNNGC	2 cut(s)	934, 1006
HpyF3I	CTNAG	1 cut(s)	1190
HpySE526I	ACGT	3 cut(s)	792, 807, 977
Hsp92II	CATG	7 cut(s)	95, 105, 690, 775, 1073, 1093, 1159
KpnI	GGTACC	3 cut(s)	349, 379, 507
Kzo9I	GATC	9 cut(s)	4, 83, 97, 188, 355, 693, 930, 1015, 1186
LmnI	GCTCC	4 cut(s)	135, 472, 957, 1270
Lsp1109I	GCAGC	2 cut(s)	659, 1249
LweI	GCATC	1 cut(s)	987
MaeI	CTAG	3 cut(s)	114, 623, 867
MaeII	ACGT	3 cut(s)	792, 807, 977
MaeIII	GTNAC	3 cut(s)	565, 586, 1231
MalI	GATC	9 cut(s)	6, 85, 99, 190, 357, 695, 932, 1017, 1188
MboI	GATC	9 cut(s)	4, 83, 97, 188, 355, 693, 930, 1015, 1186
MboII	GAAGA	8 cut(s)	158, 175, 253, 420, 671, 698, 859, 931
MflI	RGATCY	2 cut(s)	4, 83
MhlI	GDGCHC	1 cut(s)	1215
MlsI	TGGCCA	1 cut(s)	1068
MluCI	AATT	1 cut(s)	1246
MluNI	TGGCCA	1 cut(s)	1068
MlyI	GAGTC	3 cut(s)	708, 737, 1046
MmeI	TCCRAC	3 cut(s)	428, 513, 548
Mox20I	TGGCCA	1 cut(s)	1068
MroXI	GAANNNNTTC	1 cut(s)	851
MscI	TGGCCA	1 cut(s)	1068
MseI	TTAA	3 cut(s)	509, 753, 1128
MslI	CAYNNNNRTG	1 cut(s)	753
Msp20I	TGGCCA	1 cut(s)	1068
MspI	CCGG	6 cut(s)	176, 597, 1097, 1216, 1229, 1274
MspR9I	CCNGG	2 cut(s)	1098, 1216
MvnI	CGCG	2 cut(s)	657, 797
MwoI	GCNNNNNNNGC	2 cut(s)	934, 1006
NciI	CCSGG	2 cut(s)	1098, 1216
NcoI	CCATGG	2 cut(s)	101, 1069
NdeII	GATC	9 cut(s)	4, 83, 97, 188, 355, 693, 930, 1015, 1186
NlaIII	CATG	7 cut(s)	95, 105, 690, 775, 1073, 1093, 1159
NlaIV	GGNNCC	9 cut(s)	6, 111, 284, 347, 377, 399, 505, 653, 854
NmuCI	GTSAC	3 cut(s)	565, 586, 1231
NruI	TCGCGA	1 cut(s)	797
NspI	RCATGY	1 cut(s)	1159
PaeI	GCATGC	1 cut(s)	1159
PagI	TCATGA	2 cut(s)	91, 1089
PdmI	GAANNNNTTC	1 cut(s)	851
PfeI	GAWTC	3 cut(s)	142, 310, 1093
PflMI	CCANNNNNTGG	3 cut(s)	407, 825, 1146
PkrI	GCNGC	5 cut(s)	275, 424, 674, 910, 1264
PleI	GAGTC	3 cut(s)	708, 736, 1045
PpsI	GAGTC	3 cut(s)	708, 736, 1045
Ppu21I	YACGTR	1 cut(s)	978
PshBI	ATTAAT	1 cut(s)	753
PspN4I	GGNNCC	9 cut(s)	6, 111, 284, 347, 377, 399, 505, 653, 854
PspPI	GGNCC	1 cut(s)	109
PstI	CTGCAG	1 cut(s)	206
PstNI	CAGNNNCTG	1 cut(s)	717
PsuI	RGATCY	2 cut(s)	4, 83
RruI	TCGCGA	1 cut(s)	797
RsaI	GTAC	5 cut(s)	58, 347, 377, 505, 667
RsaNI	GTAC	5 cut(s)	57, 346, 376, 504, 666
RseI	CAYNNNNRTG	1 cut(s)	753
SaqAI	TTAA	3 cut(s)	509, 753, 1128
SatI	GCNGC	5 cut(s)	274, 423, 673, 909, 1263
Sau3AI	GATC	9 cut(s)	4, 83, 97, 188, 355, 693, 930, 1015, 1186
Sau96I	GGNCC	1 cut(s)	109
SchI	GAGTC	3 cut(s)	708, 737, 1046
ScrFI	CCNGG	2 cut(s)	1098, 1216
SduI	GDGCHC	1 cut(s)	1215
SfaNI	GCATC	1 cut(s)	987
SfcI	CTRYAG	1 cut(s)	202
SinI	GGWCC	1 cut(s)	109
SmiMI	CAYNNNNRTG	1 cut(s)	753
SmlI	CTYRAG	2 cut(s)	535, 946
SmoI	CTYRAG	2 cut(s)	535, 946
SphI	GCATGC	1 cut(s)	1159
Sse9I	AATT	1 cut(s)	1246
SspMI	CTAG	3 cut(s)	114, 623, 867
StyD4I	CCNGG	2 cut(s)	1096, 1214
StyI	CCWWGG	3 cut(s)	101, 113, 1069
TaaI	ACNGT	3 cut(s)	20, 565, 1146
TaiI	ACGT	3 cut(s)	795, 810, 980
TaqI	TCGA	3 cut(s)	147, 255, 354
TasI	AATT	1 cut(s)	1246
TauI	GCSGC	3 cut(s)	276, 425, 911
TfiI	GAWTC	3 cut(s)	142, 310, 1093
Tru1I	TTAA	3 cut(s)	509, 753, 1128
Tru9I	TTAA	3 cut(s)	509, 753, 1128
TscAI	CASTG	1 cut(s)	1064
TseFI	GTSAC	3 cut(s)	565, 586, 1231
TseI	GCWGC	2 cut(s)	672, 1262
Tsp45I	GTSAC	3 cut(s)	565, 586, 1231
TspDTI	ATGAA	6 cut(s)	378, 737, 860, 1069, 1078, 1148
TspRI	CASTG	1 cut(s)	1064
Van91I	CCANNNNNTGG	3 cut(s)	407, 825, 1146
VpaK11BI	GGWCC	1 cut(s)	109
VspI	ATTAAT	1 cut(s)	753
XceI	RCATGY	1 cut(s)	1159
XmaJI	CCTAGG	1 cut(s)	113
XmnI	GAANNNNTTC	1 cut(s)	851
XspI	CTAG	3 cut(s)	114, 623, 867

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.