Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0017683

Physical Location & Seq

Genomic Coordinates Reverse (-)

5942244 .. 5943522

Gene Structure 1279 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G006270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1242 bp

ATGGATCCTCATTTTCATCGTCTCTCTGAAATCCCCTTACCCTTGTCATTTAGCAGTACCTACGCTGGTAGTAGTAGTGGATCTAATCATGATGATCCATGGATGGACCCTAGGATATGGAGGAAGCTCCCAACTCGGATTCTCGACCGCATTATTGCCTTTCTTCCACCACCGGCCTTCTTCCGATCTCGGTGTGTCTGCAGGAGATGGAATGGCCTGTTGTTCACCAACACCTTCCTTCAACTCTACCTCGATATCTTCCCACACCGTCGCCATTGGTTCCTCTTTTTCAAGGTCTACACCCAGAATCTCATTGATGACAACAACAACAACAGGGCTGAAGGGTACCTTTTCGATCCTTATGAACTCGTCTGGTACCGCCTTCCCTTTCCTTTGGTTCCACCATCTGGCTTCTGTCCAGCCGCTTCTTCAGGCGGACTGGTCTGTTGGATTTCGGATAACCCTGCTCCGAAAAACCTACTTCTCTCCAACCCGCTTTCGGGTACCTTAAACCAACTCCCTCGAACCCTAACCTCAAGGTATCAACCCTCCATCGGCTTTACTGTTACCCCTACTTCCATAGACGTCACCCTTGCCGGAGATGACCTCATCAACAATGCCCTAGCTGTAAAGAACTCCACCGCAGAAAGGTTCCGCGTGGATGGTACGGGCTGCTTTCTTCCCACATGGCAGATCACTTCTCCTCTTCCCAGACTCTGCAATTTTGAGTCGGCTGGTAGAATGGTTCACATTAATGGAAGGCTCTACAACATGAGCTACCACCCTTTCAACGTCGCGACCTATGACGTGGAAACAGCCAGTTGGTGGGATATTCAGCCACCGATGAAGAGGTTCCTGAAGTGTCCTAGCGTGGTAGAGAGTGGCACTGGGAAGCTTCTGCTGGTTGCGGCTATTGAAAAGAGGTCGCTGATCGTGCCGAAAAGCTTGAGGGTCTGGAGCTTGCAGGAAGGAACTACGTGGGTGGAGATTGAGAGGATGCCTCAACTGCTTTATGATCGGTTCGGTGCGGAGATGGAGTCCTGTGGGAATGGGTTTCACTGCGTTGGCCATGGAGAGTTCATTGTGTTCATGATTCCGGGGAGTTCTCGTCATTTGGGTGTGTTGTTTAATATGAACACCAAACTGTGGAAGTGTATGCCTCCCTGTCCTTTTCCCCGGCTTGCTACTCCGGTCACTTCGCTTCTGAATTATCAGTTCCCTGCTGCTCCATTTCCGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0006355 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009889 GO:0009987 GO:0010468 GO:0010498 GO:0010556 GO:0016567 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031146 GO:0031323 GO:0031326 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051603 GO:0060255 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

413

Amino Acids

46.93

Weight (kDa)

8.84

Isoelectric Point (pI)

47.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	40 - 77	2.1e-06	F-box-like
Beta-prop_KIB1-4	PF03478	126 - 333	1.7e-07	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017683)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g06880 FvH4_6g06880 FvH4_6g06880
rosa_chinensis	RchiOBHm_Chr3g0456371
rosa_laevigata	RLG00000025308
rosa_multiflora	Rmu_sc0020202.1_g000002
rosa_roxburghii	Rroxscaffold_6G00422770
rosa_rugosa	Rorug03G0012700
rosa_samantha	Rh3BG075100 Rh3CG074700 Rh3DG076500
rosa_wichuraiana	Rw3G006270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	588
Acc65I	GGTACC	3 cut(s)	345, 375, 503
AccB1I	GGYRCC	3 cut(s)	345, 375, 503
AccB7I	CCANNNNNTGG	3 cut(s)	407, 825, 1146
AccI	GTMKAC	1 cut(s)	297
AccII	CGCG	2 cut(s)	657, 797
AciI	CCGC	9 cut(s)	148, 379, 423, 435, 494, 642, 655, 908, 1028
AclWI	GGATC	4 cut(s)	12, 88, 89, 350
AcoI	YGGCCR	1 cut(s)	1066
AcuI	CTGAAG	3 cut(s)	360, 414, 878
AcyI	GRCGYC	1 cut(s)	585
AfaI	GTAC	5 cut(s)	58, 347, 377, 505, 667
AfiI	CCNNNNNNNGG	7 cut(s)	407, 499, 500, 554, 648, 825, 1146
AgsI	TTSAA	4 cut(s)	242, 292, 790, 917
AjiI	CACGTC	1 cut(s)	808
AluBI	AGCT	6 cut(s)	127, 626, 777, 895, 945, 960
AluI	AGCT	6 cut(s)	127, 626, 777, 895, 945, 960
Alw26I	GTCTC	1 cut(s)	26
AlwI	GGATC	4 cut(s)	12, 88, 89, 350
AlwNI	CAGNNNCTG	1 cut(s)	717
AoxI	GGCC	3 cut(s)	174, 214, 1066
ApeKI	GCWGC	2 cut(s)	672, 1223
AseI	ATTAAT	1 cut(s)	753
Asp700I	GAANNNNTTC	1 cut(s)	851
Asp718I	GGTACC	3 cut(s)	345, 375, 503
AspA2I	CCTAGG	1 cut(s)	110
AspS9I	GGNCC	1 cut(s)	106
AsuC2I	CCSGG	2 cut(s)	1098, 1177
AsuHPI	GGTGA	2 cut(s)	217, 580
AvaII	GGWCC	1 cut(s)	106
AvrII	CCTAGG	1 cut(s)	110
BalI	TGGCCA	1 cut(s)	1068
BamHI	GGATCC	1 cut(s)	4
BanI	GGYRCC	3 cut(s)	345, 375, 503
BbvI	GCAGC	2 cut(s)	659, 1210
BccI	CCATC	6 cut(s)	97, 201, 412, 560, 656, 1027
BcnI	CCSGG	2 cut(s)	1098, 1177
BcoDI	GTCTC	1 cut(s)	26
BfaI	CTAG	3 cut(s)	111, 623, 867
BfmI	CTRYAG	1 cut(s)	199
BisI	GCNGC	4 cut(s)	423, 673, 909, 1224
BlnI	CCTAGG	1 cut(s)	110
BlsI	GCNGC	4 cut(s)	424, 674, 910, 1225
Bme1390I	CCNGG	2 cut(s)	1098, 1177
Bme18I	GGWCC	1 cut(s)	106
BmgBI	CACGTC	1 cut(s)	808
BmgT120I	GGNCC	1 cut(s)	106
BmiI	GGNNCC	9 cut(s)	6, 108, 281, 347, 377, 399, 505, 653, 854
BmrFI	CCNGG	2 cut(s)	1098, 1177
BmrI	ACTGGG	1 cut(s)	897
BmsI	GCATC	1 cut(s)	987
BmuI	ACTGGG	1 cut(s)	897
BplI	GAGNNNNNCTC	4 cut(s)	591, 623, 985, 1017
BpmI	CTGGAG	1 cut(s)	976
BpuEI	CTTGAG	2 cut(s)	520, 967
BpuMI	CCSGG	2 cut(s)	1098, 1177
BsaAI	YACGTR	1 cut(s)	978
BsaHI	GRCGYC	1 cut(s)	585
BsaJI	CCNNGG	5 cut(s)	98, 110, 1069, 1097, 1175
BsaWI	WCCGGW	1 cut(s)	1189
BsaXI	ACNNNNNCTCC	4 cut(s)	1022, 1052, 1093, 1123
Bsc4I	CCNNNNNNNGG	7 cut(s)	407, 499, 500, 554, 648, 825, 1146
Bse118I	RCCGGY	1 cut(s)	172
Bse1I	ACTGG	3 cut(s)	444, 819, 892
BseDI	CCNNGG	5 cut(s)	98, 110, 1069, 1097, 1175
BseGI	GGATG	3 cut(s)	108, 667, 1002
BseLI	CCNNNNNNNGG	7 cut(s)	407, 499, 500, 554, 648, 825, 1146
BseNI	ACTGG	3 cut(s)	444, 819, 892
BseRI	GAGGAG	1 cut(s)	693
BseXI	GCAGC	2 cut(s)	659, 1210
Bsh1236I	CGCG	2 cut(s)	657, 797
Bsh1285I	CGRYCG	1 cut(s)	148
BshFI	GGCC	3 cut(s)	176, 216, 1068
BshNI	GGYRCC	3 cut(s)	345, 375, 503
BsiEI	CGRYCG	1 cut(s)	148
BsiSI	CCGG	6 cut(s)	173, 597, 1097, 1177, 1190, 1235
BslI	CCNNNNNNNGG	7 cut(s)	407, 499, 500, 554, 648, 825, 1146
BsmAI	GTCTC	1 cut(s)	26
BsmBI	CGTCTC	1 cut(s)	26
BsnI	GGCC	3 cut(s)	176, 216, 1068
Bsp143I	GATC	8 cut(s)	4, 80, 94, 185, 355, 693, 930, 1015
Bsp19I	CCATGG	2 cut(s)	98, 1069
Bsp68I	TCGCGA	1 cut(s)	797
BspACI	CCGC	9 cut(s)	148, 379, 423, 435, 494, 642, 655, 908, 1028
BspANI	GGCC	3 cut(s)	176, 216, 1068
BspFNI	CGCG	2 cut(s)	657, 797
BspHI	TCATGA	2 cut(s)	88, 1089
BspLI	GGNNCC	9 cut(s)	6, 108, 281, 347, 377, 399, 505, 653, 854
BspMAI	CTGCAG	1 cut(s)	203
BspPI	GGATC	4 cut(s)	12, 88, 89, 350
BspT107I	GGYRCC	3 cut(s)	345, 375, 503
BsrFI	RCCGGY	1 cut(s)	172
BsrI	ACTGG	3 cut(s)	444, 819, 892
BssAI	RCCGGY	1 cut(s)	172
BssECI	CCNNGG	5 cut(s)	98, 110, 1069, 1097, 1175
BssMI	GATC	8 cut(s)	4, 80, 94, 185, 355, 693, 930, 1015
BssNI	GRCGYC	1 cut(s)	585
BssT1I	CCWWGG	3 cut(s)	98, 110, 1069
Bst4CI	ACNGT	3 cut(s)	269, 565, 1146
Bst6I	CTCTTC	2 cut(s)	711, 842
BstACI	GRCGYC	1 cut(s)	585
BstBAI	YACGTR	1 cut(s)	978
BstC8I	GCNNGC	2 cut(s)	962, 1182
BstDSI	CCRYGG	2 cut(s)	98, 1069
BstF5I	GGATG	3 cut(s)	108, 667, 1002
BstFNI	CGCG	2 cut(s)	657, 797
BstKTI	GATC	8 cut(s)	7, 83, 97, 188, 358, 696, 933, 1018
BstMAI	GTCTC	1 cut(s)	26
BstMBI	GATC	8 cut(s)	4, 80, 94, 185, 355, 693, 930, 1015
BstMCI	CGRYCG	1 cut(s)	148
BstMWI	GCNNNNNNNGC	2 cut(s)	934, 1006
BstSCI	CCNGG	2 cut(s)	1096, 1175
BstSFI	CTRYAG	1 cut(s)	199
BstUI	CGCG	2 cut(s)	657, 797
BstV1I	GCAGC	2 cut(s)	659, 1210
BstX2I	RGATCY	2 cut(s)	4, 80
BstYI	RGATCY	2 cut(s)	4, 80
BsuRI	GGCC	3 cut(s)	176, 216, 1068
BtgI	CCRYGG	2 cut(s)	98, 1069
BtrI	CACGTC	1 cut(s)	808
BtsCI	GGATG	3 cut(s)	108, 667, 1002
BtsI	GCAGTG	1 cut(s)	1057
BtsIMutI	CAGTG	2 cut(s)	885, 1057
BtuMI	TCGCGA	1 cut(s)	797
Cac8I	GCNNGC	2 cut(s)	962, 1182
CaiI	CAGNNNCTG	1 cut(s)	717
CciI	TCATGA	2 cut(s)	88, 1089
Cfr10I	RCCGGY	1 cut(s)	172
Cfr13I	GGNCC	1 cut(s)	106
Csp6I	GTAC	5 cut(s)	57, 346, 376, 504, 666
CviAII	CATG	6 cut(s)	89, 99, 687, 772, 1070, 1090
CviQI	GTAC	5 cut(s)	57, 346, 376, 504, 666
DpnI	GATC	8 cut(s)	6, 82, 96, 187, 357, 695, 932, 1017
DpnII	GATC	8 cut(s)	4, 80, 94, 185, 355, 693, 930, 1015
EaeI	YGGCCR	1 cut(s)	1066
Eam1104I	CTCTTC	2 cut(s)	711, 842
EarI	CTCTTC	2 cut(s)	711, 842
EciI	GGCGGA	1 cut(s)	450
Eco130I	CCWWGG	3 cut(s)	98, 110, 1069
Eco32I	GATATC	1 cut(s)	256
Eco47I	GGWCC	1 cut(s)	106
Eco57I	CTGAAG	3 cut(s)	360, 414, 878
EcoRV	GATATC	1 cut(s)	256
EcoT14I	CCWWGG	3 cut(s)	98, 110, 1069
ErhI	CCWWGG	3 cut(s)	98, 110, 1069
Esp3I	CGTCTC	1 cut(s)	26
FaeI	CATG	6 cut(s)	92, 102, 690, 775, 1073, 1093
FalI	AAGNNNNNCTT	2 cut(s)	333, 365
FatI	CATG	6 cut(s)	88, 98, 686, 771, 1069, 1089
FauI	CCCGC	1 cut(s)	501
FblI	GTMKAC	1 cut(s)	297
Fnu4HI	GCNGC	4 cut(s)	423, 673, 909, 1224
FokI	GGATG	3 cut(s)	115, 674, 1009
Fsp4HI	GCNGC	4 cut(s)	423, 673, 909, 1224
FspBI	CTAG	3 cut(s)	111, 623, 867
GluI	GCNGC	4 cut(s)	423, 673, 909, 1224
GsuI	CTGGAG	1 cut(s)	976
HaeIII	GGCC	3 cut(s)	176, 216, 1068
HapII	CCGG	6 cut(s)	173, 597, 1097, 1177, 1190, 1235
Hin1I	GRCGYC	1 cut(s)	585
Hin1II	CATG	6 cut(s)	92, 102, 690, 775, 1073, 1093
HindIII	AAGCTT	2 cut(s)	893, 943
HinfI	GANTC	6 cut(s)	139, 307, 714, 728, 1037, 1093
HpaII	CCGG	6 cut(s)	173, 597, 1097, 1177, 1190, 1235
HphI	GGTGA	2 cut(s)	217, 580
Hpy166II	GTNNAC	3 cut(s)	225, 298, 748
Hpy188I	TCNGA	6 cut(s)	28, 138, 185, 457, 471, 1206
Hpy188III	TCNNGA	6 cut(s)	89, 143, 796, 856, 955, 1090
Hpy8I	GTNNAC	3 cut(s)	225, 298, 748
Hpy99I	CGWCG	2 cut(s)	273, 797
HpyAV	CCTTC	7 cut(s)	187, 244, 248, 335, 392, 753, 962
HpyCH4III	ACNGT	3 cut(s)	269, 565, 1146
HpyCH4IV	ACGT	4 cut(s)	585, 792, 807, 977
HpyCH4V	TGCA	3 cut(s)	201, 720, 964
HpyF10VI	GCNNNNNNNGC	2 cut(s)	934, 1006
HpySE526I	ACGT	4 cut(s)	585, 792, 807, 977
Hsp92I	GRCGYC	1 cut(s)	585
Hsp92II	CATG	6 cut(s)	92, 102, 690, 775, 1073, 1093
KpnI	GGTACC	3 cut(s)	349, 379, 507
Kzo9I	GATC	8 cut(s)	4, 80, 94, 185, 355, 693, 930, 1015
LmnI	GCTCC	4 cut(s)	132, 472, 957, 1231
Lsp1109I	GCAGC	2 cut(s)	659, 1210
LweI	GCATC	1 cut(s)	987
MaeI	CTAG	3 cut(s)	111, 623, 867
MaeII	ACGT	4 cut(s)	585, 792, 807, 977
MaeIII	GTNAC	3 cut(s)	565, 586, 1192
MalI	GATC	8 cut(s)	6, 82, 96, 187, 357, 695, 932, 1017
MboI	GATC	8 cut(s)	4, 80, 94, 185, 355, 693, 930, 1015
MboII	GAAGA	7 cut(s)	155, 172, 250, 420, 671, 698, 859
MflI	RGATCY	2 cut(s)	4, 80
MlsI	TGGCCA	1 cut(s)	1068
MluCI	AATT	2 cut(s)	721, 1207
MluNI	TGGCCA	1 cut(s)	1068
MlyI	GAGTC	3 cut(s)	708, 737, 1046
MmeI	TCCRAC	2 cut(s)	428, 513
Mox20I	TGGCCA	1 cut(s)	1068
MroXI	GAANNNNTTC	1 cut(s)	851
MscI	TGGCCA	1 cut(s)	1068
MseI	TTAA	3 cut(s)	509, 753, 1128
MslI	CAYNNNNRTG	2 cut(s)	753, 1116
Msp20I	TGGCCA	1 cut(s)	1068
MspI	CCGG	6 cut(s)	173, 597, 1097, 1177, 1190, 1235
MspR9I	CCNGG	2 cut(s)	1098, 1177
MvnI	CGCG	2 cut(s)	657, 797
MwoI	GCNNNNNNNGC	2 cut(s)	934, 1006
NciI	CCSGG	2 cut(s)	1098, 1177
NcoI	CCATGG	2 cut(s)	98, 1069
NdeII	GATC	8 cut(s)	4, 80, 94, 185, 355, 693, 930, 1015
NlaIII	CATG	6 cut(s)	92, 102, 690, 775, 1073, 1093
NlaIV	GGNNCC	9 cut(s)	6, 108, 281, 347, 377, 399, 505, 653, 854
NmuCI	GTSAC	2 cut(s)	586, 1192
NruI	TCGCGA	1 cut(s)	797
PagI	TCATGA	2 cut(s)	88, 1089
PdmI	GAANNNNTTC	1 cut(s)	851
PfeI	GAWTC	3 cut(s)	139, 307, 1093
PflMI	CCANNNNNTGG	3 cut(s)	407, 825, 1146
PkrI	GCNGC	4 cut(s)	424, 674, 910, 1225
PleI	GAGTC	3 cut(s)	708, 736, 1045
PpsI	GAGTC	3 cut(s)	708, 736, 1045
Ppu21I	YACGTR	1 cut(s)	978
PshBI	ATTAAT	1 cut(s)	753
PspN4I	GGNNCC	9 cut(s)	6, 108, 281, 347, 377, 399, 505, 653, 854
PspPI	GGNCC	1 cut(s)	106
PstI	CTGCAG	1 cut(s)	203
PstNI	CAGNNNCTG	1 cut(s)	717
PsuI	RGATCY	2 cut(s)	4, 80
RruI	TCGCGA	1 cut(s)	797
RsaI	GTAC	5 cut(s)	58, 347, 377, 505, 667
RsaNI	GTAC	5 cut(s)	57, 346, 376, 504, 666
RseI	CAYNNNNRTG	2 cut(s)	753, 1116
SaqAI	TTAA	3 cut(s)	509, 753, 1128
SatI	GCNGC	4 cut(s)	423, 673, 909, 1224
Sau3AI	GATC	8 cut(s)	4, 80, 94, 185, 355, 693, 930, 1015
Sau96I	GGNCC	1 cut(s)	106
SchI	GAGTC	3 cut(s)	708, 737, 1046
ScrFI	CCNGG	2 cut(s)	1098, 1177
SfaNI	GCATC	1 cut(s)	987
SfcI	CTRYAG	1 cut(s)	199
SinI	GGWCC	1 cut(s)	106
SmiMI	CAYNNNNRTG	2 cut(s)	753, 1116
SmlI	CTYRAG	2 cut(s)	535, 946
SmoI	CTYRAG	2 cut(s)	535, 946
Sse9I	AATT	2 cut(s)	721, 1207
SsiI	CCGC	9 cut(s)	148, 379, 423, 435, 494, 642, 655, 908, 1028
SspMI	CTAG	3 cut(s)	111, 623, 867
StyD4I	CCNGG	2 cut(s)	1096, 1175
StyI	CCWWGG	3 cut(s)	98, 110, 1069
TaaI	ACNGT	3 cut(s)	269, 565, 1146
TaiI	ACGT	4 cut(s)	588, 795, 810, 980
TaqI	TCGA	4 cut(s)	144, 252, 354, 523
TasI	AATT	2 cut(s)	721, 1207
TauI	GCSGC	2 cut(s)	425, 911
TfiI	GAWTC	3 cut(s)	139, 307, 1093
Tru1I	TTAA	3 cut(s)	509, 753, 1128
Tru9I	TTAA	3 cut(s)	509, 753, 1128
TscAI	CASTG	2 cut(s)	892, 1064
TseFI	GTSAC	2 cut(s)	586, 1192
TseI	GCWGC	2 cut(s)	672, 1223
Tsp45I	GTSAC	2 cut(s)	586, 1192
TspDTI	ATGAA	6 cut(s)	5, 378, 860, 1069, 1078, 1148
TspRI	CASTG	2 cut(s)	892, 1064
Van91I	CCANNNNNTGG	3 cut(s)	407, 825, 1146
VpaK11BI	GGWCC	1 cut(s)	106
VspI	ATTAAT	1 cut(s)	753
XmaJI	CCTAGG	1 cut(s)	110
XmiI	GTMKAC	1 cut(s)	297
XmnI	GAANNNNTTC	1 cut(s)	851
XspI	CTAG	3 cut(s)	111, 623, 867
ZraI	GACGTC	1 cut(s)	586

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.