Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0017683

Physical Location & Seq

Genomic Coordinates Reverse (-)

5877759 .. 5879042

Gene Structure 1284 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG076500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1284 bp

ATGGATCCTCATTTTCACCGTCTCTCTGACATCCCCTTACCCTTGTCATTTAGCAGTACCTACGCTGGTAGTAGTAGTAGTGGATCTAATCATGATGATCCATGGATGGACCCTAGGATATGGAGGAAGCTCCCAACTCGGATTCTCGACCGCATTATCGCCTTTCTTCCACCACCAGCCTTCTTCCGATCTCGGTGTGTCTGCAGGAGATGGAATGGCCTGTTGTTCACCAACACCTTCCTTCAACTCTACCTCGATATCTTCCCACACCGTCGCCATTGGTTCCTCTTTTTCAAGGCCGACACCCAGAATCTCATTGATGACAACAACAACAACAGGGCTGAAGGGTACCTTTTCGATCCTTATGAACTAGTCTGGTACCGCCTTCCCTTTCCTTTGGTTCCACCATCTGGCTTCTCTCCAGCCGCTTCTTCAGGCGGACTGGTCTGTTGGATTTCGGATAACCCTGCTCCGAAAACCCTACTTCTCTCCAACCCGCTTTCGGGTACCTTAAACCAACTCCCTCCAACCCTAACCTCAAGGTATCAACCCTCCATCGGCTTTACTGTCACCCCTACTTCCATAGACGTCACCCTTGCCGGAGATGACCTCATCAACAATGCCCTAGCTGTAAAGAACTCCACCGCAGAAAGGTTCCGCGTGGATGGTACGGGCTGCTTTCTTCCCACATGGCAGATCACTTCTCCTCTTCCCAGACTCTGCAACTTTGAGTCGGCTGGTAGAATGGTTCATATTAATAGAAGGCTCTACAACATGAGCTACCACCCTTTCAACGTCGCGACCTATGACGTCGAAACAGCCAGTTGGTGGGATATTCAACCACCGATGAAGAGGTTCCTGAAGTGTCCTAGCGTGGTAGAGAGTGGCACAGGGAAGCTTCTGCTGGTTGCGGCTATTGAGAAGAGGTCGCTGATCGTGCCGAAAAGCTTGAGGGTCTGGAGCTTGCAGGAAGGAACTACGTGGGTGGAGATTGAGAGGATGCCTCAGCTGCTTTATGATCGGTTTGGTGCGGAGATGGAGTCCTGTGGGAATGGGTTTCACTGCGTTAGCCATGGTGAGTTCATTGTGTTCATGATTCCGCGGAGTTCTCGTCATTTGGGTGTGTTGTTTAATAGGAACACCAAACTGTGGAAGTGTATGCCTCCCTGTCCTTTTGTTGGTATGGGTGATCTGAGCCGTGGTTTTGCTTATGAGCCCCGGCTTGCTACTCCGGTCACTTCGCTTCTGAATTATCAGTTTCCTGCTGCTCCATTTCCGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0006355 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009889 GO:0009987 GO:0010468 GO:0010498 GO:0010556 GO:0016567 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031146 GO:0031323 GO:0031326 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051603 GO:0060255 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

427

Amino Acids

48.47

Weight (kDa)

8.89

Isoelectric Point (pI)

50.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	41 - 78	2.2e-06	F-box-like
Beta-prop_KIB1-4	PF03478	127 - 334	1.1e-06	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017683)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g06880 FvH4_6g06880 FvH4_6g06880
rosa_chinensis	RchiOBHm_Chr3g0456371
rosa_laevigata	RLG00000025308
rosa_multiflora	Rmu_sc0020202.1_g000002
rosa_roxburghii	Rroxscaffold_6G00422770
rosa_rugosa	Rorug03G0012700
rosa_samantha	Rh3BG075100 Rh3CG074700 Rh3DG076500
rosa_wichuraiana	Rw3G006270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	591, 813
Acc65I	GGTACC	3 cut(s)	348, 378, 506
AccB1I	GGYRCC	3 cut(s)	348, 378, 506
AccB7I	CCANNNNNTGG	3 cut(s)	410, 828, 1149
AccII	CGCG	3 cut(s)	660, 800, 1102
AclWI	GGATC	4 cut(s)	12, 91, 92, 353
AcuI	CTGAAG	3 cut(s)	363, 417, 881
AcyI	GRCGYC	2 cut(s)	588, 810
AfaI	GTAC	5 cut(s)	58, 350, 380, 508, 670
AfiI	CCNNNNNNNGG	8 cut(s)	410, 502, 503, 557, 651, 828, 1149, 1178
AgsI	TTSAA	4 cut(s)	245, 295, 793, 839
AhlI	ACTAGT	1 cut(s)	370
AluBI	AGCT	7 cut(s)	130, 629, 780, 898, 948, 963, 1009
AluI	AGCT	7 cut(s)	130, 629, 780, 898, 948, 963, 1009
Alw26I	GTCTC	1 cut(s)	26
AlwI	GGATC	4 cut(s)	12, 91, 92, 353
AlwNI	CAGNNNCTG	1 cut(s)	720
AoxI	GGCC	2 cut(s)	217, 297
ApeKI	GCWGC	3 cut(s)	675, 1009, 1265
AseI	ATTAAT	1 cut(s)	756
Asp700I	GAANNNNTTC	1 cut(s)	854
Asp718I	GGTACC	3 cut(s)	348, 378, 506
AspA2I	CCTAGG	1 cut(s)	113
AspS9I	GGNCC	1 cut(s)	109
AsuC2I	CCSGG	1 cut(s)	1219
AsuHPI	GGTGA	6 cut(s)	8, 220, 562, 583, 1088, 1199
AvaII	GGWCC	1 cut(s)	109
AvrII	CCTAGG	1 cut(s)	113
BamHI	GGATCC	1 cut(s)	4
BanI	GGYRCC	3 cut(s)	348, 378, 506
BanII	GRGCYC	1 cut(s)	1218
BbvCI	CCTCAGC	1 cut(s)	1005
BbvI	GCAGC	3 cut(s)	662, 996, 1252
BccI	CCATC	6 cut(s)	100, 204, 415, 563, 659, 1030
BceAI	ACGGC	1 cut(s)	1182
BcnI	CCSGG	1 cut(s)	1219
BcoDI	GTCTC	1 cut(s)	26
BcuI	ACTAGT	1 cut(s)	370
BfaI	CTAG	4 cut(s)	114, 371, 626, 870
BfmI	CTRYAG	1 cut(s)	202
BisI	GCNGC	5 cut(s)	426, 676, 912, 1010, 1266
BlnI	CCTAGG	1 cut(s)	113
BlsI	GCNGC	5 cut(s)	427, 677, 913, 1011, 1267
Bme1390I	CCNGG	1 cut(s)	1219
Bme18I	GGWCC	1 cut(s)	109
BmgT120I	GGNCC	1 cut(s)	109
BmiI	GGNNCC	9 cut(s)	6, 111, 284, 350, 380, 402, 508, 656, 857
BmrFI	CCNGG	1 cut(s)	1219
BmsI	GCATC	1 cut(s)	990
BplI	GAGNNNNNCTC	4 cut(s)	594, 626, 988, 1020
BpmI	CTGGAG	2 cut(s)	405, 979
Bpu10I	CCTNAGC	1 cut(s)	1005
BpuEI	CTTGAG	2 cut(s)	523, 970
BpuMI	CCSGG	1 cut(s)	1219
BsaAI	YACGTR	1 cut(s)	981
BsaHI	GRCGYC	2 cut(s)	588, 810
BsaJI	CCNNGG	6 cut(s)	101, 113, 1072, 1100, 1198, 1217
BsaWI	WCCGGW	1 cut(s)	1231
BsaXI	ACNNNNNCTCC	4 cut(s)	1025, 1055, 1096, 1126
Bsc4I	CCNNNNNNNGG	8 cut(s)	410, 502, 503, 557, 651, 828, 1149, 1178
Bse1I	ACTGG	2 cut(s)	447, 822
BseDI	CCNNGG	6 cut(s)	101, 113, 1072, 1100, 1198, 1217
BseGI	GGATG	4 cut(s)	30, 111, 670, 1005
BseLI	CCNNNNNNNGG	8 cut(s)	410, 502, 503, 557, 651, 828, 1149, 1178
BseMII	CTCAG	2 cut(s)	1019, 1184
BseNI	ACTGG	2 cut(s)	447, 822
BseRI	GAGGAG	1 cut(s)	696
BseXI	GCAGC	3 cut(s)	662, 996, 1252
Bsh1236I	CGCG	3 cut(s)	660, 800, 1102
Bsh1285I	CGRYCG	1 cut(s)	151
BshFI	GGCC	2 cut(s)	219, 299
BshNI	GGYRCC	3 cut(s)	348, 378, 506
BsiEI	CGRYCG	1 cut(s)	151
BsiSI	CCGG	4 cut(s)	600, 1219, 1232, 1277
BslI	CCNNNNNNNGG	8 cut(s)	410, 502, 503, 557, 651, 828, 1149, 1178
BsmAI	GTCTC	1 cut(s)	26
BsmBI	CGTCTC	1 cut(s)	26
BsnI	GGCC	2 cut(s)	219, 299
Bsp1286I	GDGCHC	1 cut(s)	1218
Bsp143I	GATC	9 cut(s)	4, 83, 97, 188, 358, 696, 933, 1018, 1189
Bsp19I	CCATGG	2 cut(s)	101, 1072
Bsp68I	TCGCGA	1 cut(s)	800
BspANI	GGCC	2 cut(s)	219, 299
BspCNI	CTCAG	2 cut(s)	1018, 1185
BspFNI	CGCG	3 cut(s)	660, 800, 1102
BspHI	TCATGA	2 cut(s)	91, 1092
BspLI	GGNNCC	9 cut(s)	6, 111, 284, 350, 380, 402, 508, 656, 857
BspMAI	CTGCAG	1 cut(s)	206
BspPI	GGATC	4 cut(s)	12, 91, 92, 353
BspT107I	GGYRCC	3 cut(s)	348, 378, 506
BsrI	ACTGG	2 cut(s)	447, 822
BssECI	CCNNGG	6 cut(s)	101, 113, 1072, 1100, 1198, 1217
BssMI	GATC	9 cut(s)	4, 83, 97, 188, 358, 696, 933, 1018, 1189
BssNI	GRCGYC	2 cut(s)	588, 810
BssT1I	CCWWGG	3 cut(s)	101, 113, 1072
Bst4CI	ACNGT	4 cut(s)	20, 272, 568, 1149
Bst6I	CTCTTC	3 cut(s)	714, 845, 917
BstACI	GRCGYC	2 cut(s)	588, 810
BstBAI	YACGTR	1 cut(s)	981
BstC8I	GCNNGC	2 cut(s)	965, 1224
BstDEI	CTNAG	2 cut(s)	1005, 1193
BstDSI	CCRYGG	4 cut(s)	101, 1072, 1100, 1198
BstF5I	GGATG	4 cut(s)	30, 111, 670, 1005
BstFNI	CGCG	3 cut(s)	660, 800, 1102
BstKTI	GATC	9 cut(s)	7, 86, 100, 191, 361, 699, 936, 1021, 1192
BstMAI	GTCTC	1 cut(s)	26
BstMBI	GATC	9 cut(s)	4, 83, 97, 188, 358, 696, 933, 1018, 1189
BstMCI	CGRYCG	1 cut(s)	151
BstMWI	GCNNNNNNNGC	2 cut(s)	937, 1009
BstSCI	CCNGG	1 cut(s)	1217
BstSFI	CTRYAG	1 cut(s)	202
BstUI	CGCG	3 cut(s)	660, 800, 1102
BstV1I	GCAGC	3 cut(s)	662, 996, 1252
BstX2I	RGATCY	2 cut(s)	4, 83
BstYI	RGATCY	2 cut(s)	4, 83
BsuRI	GGCC	2 cut(s)	219, 299
BtgI	CCRYGG	4 cut(s)	101, 1072, 1100, 1198
BtsCI	GGATG	4 cut(s)	30, 111, 670, 1005
BtsI	GCAGTG	1 cut(s)	1060
BtsIMutI	CAGTG	1 cut(s)	1060
BtuMI	TCGCGA	1 cut(s)	800
Cac8I	GCNNGC	2 cut(s)	965, 1224
CaiI	CAGNNNCTG	1 cut(s)	720
CciI	TCATGA	2 cut(s)	91, 1092
Cfr13I	GGNCC	1 cut(s)	109
Cfr42I	CCGCGG	1 cut(s)	1103
Csp6I	GTAC	5 cut(s)	57, 349, 379, 507, 669
CviAII	CATG	6 cut(s)	92, 102, 690, 775, 1073, 1093
CviQI	GTAC	5 cut(s)	57, 349, 379, 507, 669
DdeI	CTNAG	2 cut(s)	1005, 1193
DpnI	GATC	9 cut(s)	6, 85, 99, 190, 360, 698, 935, 1020, 1191
DpnII	GATC	9 cut(s)	4, 83, 97, 188, 358, 696, 933, 1018, 1189
Eam1104I	CTCTTC	3 cut(s)	714, 845, 917
EarI	CTCTTC	3 cut(s)	714, 845, 917
EciI	GGCGGA	1 cut(s)	453
Eco130I	CCWWGG	3 cut(s)	101, 113, 1072
Eco24I	GRGCYC	1 cut(s)	1218
Eco32I	GATATC	1 cut(s)	259
Eco47I	GGWCC	1 cut(s)	109
Eco57I	CTGAAG	3 cut(s)	363, 417, 881
EcoRV	GATATC	1 cut(s)	259
EcoT14I	CCWWGG	3 cut(s)	101, 113, 1072
EcoT38I	GRGCYC	1 cut(s)	1218
ErhI	CCWWGG	3 cut(s)	101, 113, 1072
Esp3I	CGTCTC	1 cut(s)	26
FaeI	CATG	6 cut(s)	95, 105, 693, 778, 1076, 1096
FalI	AAGNNNNNCTT	2 cut(s)	336, 368
FatI	CATG	6 cut(s)	91, 101, 689, 774, 1072, 1092
FauI	CCCGC	1 cut(s)	504
Fnu4HI	GCNGC	5 cut(s)	426, 676, 912, 1010, 1266
FokI	GGATG	4 cut(s)	17, 118, 677, 1012
FriOI	GRGCYC	1 cut(s)	1218
Fsp4HI	GCNGC	5 cut(s)	426, 676, 912, 1010, 1266
FspBI	CTAG	4 cut(s)	114, 371, 626, 870
GluI	GCNGC	5 cut(s)	426, 676, 912, 1010, 1266
GsuI	CTGGAG	2 cut(s)	405, 979
HaeIII	GGCC	2 cut(s)	219, 299
HapII	CCGG	4 cut(s)	600, 1219, 1232, 1277
Hin1I	GRCGYC	2 cut(s)	588, 810
Hin1II	CATG	6 cut(s)	95, 105, 693, 778, 1076, 1096
HindIII	AAGCTT	2 cut(s)	896, 946
HinfI	GANTC	6 cut(s)	142, 310, 717, 731, 1040, 1096
HpaII	CCGG	4 cut(s)	600, 1219, 1232, 1277
HphI	GGTGA	6 cut(s)	8, 220, 562, 583, 1088, 1199
Hpy166II	GTNNAC	1 cut(s)	228
Hpy188I	TCNGA	7 cut(s)	28, 141, 188, 460, 474, 1194, 1248
Hpy188III	TCNNGA	6 cut(s)	92, 146, 799, 859, 958, 1093
Hpy8I	GTNNAC	1 cut(s)	228
Hpy99I	CGWCG	3 cut(s)	276, 800, 815
HpyAV	CCTTC	7 cut(s)	190, 247, 251, 338, 395, 756, 965
HpyCH4III	ACNGT	4 cut(s)	20, 272, 568, 1149
HpyCH4IV	ACGT	4 cut(s)	588, 795, 810, 980
HpyCH4V	TGCA	3 cut(s)	204, 723, 967
HpyF10VI	GCNNNNNNNGC	2 cut(s)	937, 1009
HpyF3I	CTNAG	2 cut(s)	1005, 1193
HpySE526I	ACGT	4 cut(s)	588, 795, 810, 980
Hsp92I	GRCGYC	2 cut(s)	588, 810
Hsp92II	CATG	6 cut(s)	95, 105, 693, 778, 1076, 1096
KpnI	GGTACC	3 cut(s)	352, 382, 510
KspI	CCGCGG	1 cut(s)	1103
Kzo9I	GATC	9 cut(s)	4, 83, 97, 188, 358, 696, 933, 1018, 1189
LmnI	GCTCC	4 cut(s)	135, 475, 960, 1273
Lsp1109I	GCAGC	3 cut(s)	662, 996, 1252
LweI	GCATC	1 cut(s)	990
MaeI	CTAG	4 cut(s)	114, 371, 626, 870
MaeII	ACGT	4 cut(s)	588, 795, 810, 980
MaeIII	GTNAC	3 cut(s)	568, 589, 1234
MalI	GATC	9 cut(s)	6, 85, 99, 190, 360, 698, 935, 1020, 1191
MboI	GATC	9 cut(s)	4, 83, 97, 188, 358, 696, 933, 1018, 1189
MboII	GAAGA	8 cut(s)	158, 175, 253, 423, 674, 701, 862, 934
MflI	RGATCY	2 cut(s)	4, 83
MhlI	GDGCHC	1 cut(s)	1218
MluCI	AATT	1 cut(s)	1249
MlyI	GAGTC	3 cut(s)	711, 740, 1049
MmeI	TCCRAC	3 cut(s)	431, 516, 551
MroXI	GAANNNNTTC	1 cut(s)	854
MseI	TTAA	3 cut(s)	512, 756, 1131
MslI	CAYNNNNRTG	1 cut(s)	1119
MspA1I	CMGCKG	2 cut(s)	1009, 1102
MspI	CCGG	4 cut(s)	600, 1219, 1232, 1277
MspR9I	CCNGG	1 cut(s)	1219
MvnI	CGCG	3 cut(s)	660, 800, 1102
MwoI	GCNNNNNNNGC	2 cut(s)	937, 1009
NciI	CCSGG	1 cut(s)	1219
NcoI	CCATGG	2 cut(s)	101, 1072
NdeII	GATC	9 cut(s)	4, 83, 97, 188, 358, 696, 933, 1018, 1189
NlaIII	CATG	6 cut(s)	95, 105, 693, 778, 1076, 1096
NlaIV	GGNNCC	9 cut(s)	6, 111, 284, 350, 380, 402, 508, 656, 857
NmuCI	GTSAC	3 cut(s)	568, 589, 1234
NruI	TCGCGA	1 cut(s)	800
PagI	TCATGA	2 cut(s)	91, 1092
PdmI	GAANNNNTTC	1 cut(s)	854
PfeI	GAWTC	3 cut(s)	142, 310, 1096
PflMI	CCANNNNNTGG	3 cut(s)	410, 828, 1149
PkrI	GCNGC	5 cut(s)	427, 677, 913, 1011, 1267
PleI	GAGTC	3 cut(s)	711, 739, 1048
PpsI	GAGTC	3 cut(s)	711, 739, 1048
Ppu21I	YACGTR	1 cut(s)	981
PshBI	ATTAAT	1 cut(s)	756
PspN4I	GGNNCC	9 cut(s)	6, 111, 284, 350, 380, 402, 508, 656, 857
PspPI	GGNCC	1 cut(s)	109
PstI	CTGCAG	1 cut(s)	206
PstNI	CAGNNNCTG	1 cut(s)	720
PsuI	RGATCY	2 cut(s)	4, 83
PvuII	CAGCTG	1 cut(s)	1009
RruI	TCGCGA	1 cut(s)	800
RsaI	GTAC	5 cut(s)	58, 350, 380, 508, 670
RsaNI	GTAC	5 cut(s)	57, 349, 379, 507, 669
RseI	CAYNNNNRTG	1 cut(s)	1119
SacII	CCGCGG	1 cut(s)	1103
SaqAI	TTAA	3 cut(s)	512, 756, 1131
SatI	GCNGC	5 cut(s)	426, 676, 912, 1010, 1266
Sau3AI	GATC	9 cut(s)	4, 83, 97, 188, 358, 696, 933, 1018, 1189
Sau96I	GGNCC	1 cut(s)	109
SchI	GAGTC	3 cut(s)	711, 740, 1049
ScrFI	CCNGG	1 cut(s)	1219
SduI	GDGCHC	1 cut(s)	1218
SfaNI	GCATC	1 cut(s)	990
SfcI	CTRYAG	1 cut(s)	202
Sfr303I	CCGCGG	1 cut(s)	1103
SgrBI	CCGCGG	1 cut(s)	1103
SinI	GGWCC	1 cut(s)	109
SmiMI	CAYNNNNRTG	1 cut(s)	1119
SmlI	CTYRAG	2 cut(s)	538, 949
SmoI	CTYRAG	2 cut(s)	538, 949
SpeI	ACTAGT	1 cut(s)	370
Sse9I	AATT	1 cut(s)	1249
SspMI	CTAG	4 cut(s)	114, 371, 626, 870
StyD4I	CCNGG	1 cut(s)	1217
StyI	CCWWGG	3 cut(s)	101, 113, 1072
TaaI	ACNGT	4 cut(s)	20, 272, 568, 1149
TaiI	ACGT	4 cut(s)	591, 798, 813, 983
TaqI	TCGA	4 cut(s)	147, 255, 357, 813
TasI	AATT	1 cut(s)	1249
TauI	GCSGC	2 cut(s)	428, 914
TfiI	GAWTC	3 cut(s)	142, 310, 1096
Tru1I	TTAA	3 cut(s)	512, 756, 1131
Tru9I	TTAA	3 cut(s)	512, 756, 1131
TscAI	CASTG	1 cut(s)	1067
TseFI	GTSAC	3 cut(s)	568, 589, 1234
TseI	GCWGC	3 cut(s)	675, 1009, 1265
Tsp45I	GTSAC	3 cut(s)	568, 589, 1234
TspDTI	ATGAA	5 cut(s)	381, 740, 863, 1072, 1081
TspRI	CASTG	1 cut(s)	1067
Van91I	CCANNNNNTGG	3 cut(s)	410, 828, 1149
VpaK11BI	GGWCC	1 cut(s)	109
VspI	ATTAAT	1 cut(s)	756
XmaJI	CCTAGG	1 cut(s)	113
XmnI	GAANNNNTTC	1 cut(s)	854
XspI	CTAG	4 cut(s)	114, 371, 626, 870
ZraI	GACGTC	2 cut(s)	589, 811

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.